Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	R	A	R	C	Y	L	I	G	E	T	A	V	V	L	E	L	E	P	P	V	T	L	A	S	Q	K	R	I	W	R	L	A	Q	R	L	V	D	M	P	N	V	V	E	A	I	P	G	M	N	N	I	T	V	I	L	R	N	P
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	S	L	A	L	D	A	I	E	R	L	Q	R	W	W	E	E	S	E	A	L	E	P	E	S	R	F	I	E	I	P	V	V	Y	G	G	A	G	G	P	D	L	A	V	V	A	A	H	C	G	L	S	E	K	Q	V	V	E	L	H
Secondary structure
SS confidence
Disorder																		?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	S	V	E	Y	V	V	W	F	L	G	F	Q	P	G	F	P	Y	L	G	S	L	P	E	Q	L	H	T	P	R	R	A	E	P	R	L	L	V	P	A	G	S	V	G	I	G	G	P	Q	T	G	V	Y	P	L	A	T	P	G	G
Secondary structure
SS confidence
Disorder																														?							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Sequence		W	Q	L	I	G	H	T	S	L	S	L	F	D	P	A	R	D	E	P	I	L	L	R	P	G	D	S	V	R	F	V	P	Q	K	E	G	V	C
Secondary structure
SS confidence
Disorder																																		?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2phc chain B Region: 6 - 216 Aligned: 210 Modelled: 211 Confidence: 100.0% Identity: 39% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein ph0987; PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii Phyre2 PDB 3oep chain A Region: 12 - 216 Aligned: 192 Modelled: 205 Confidence: 100.0% Identity: 38% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative uncharacterized protein ttha0988; PDBTitle: crystal structure of ttha0988 in space group p43212 Phyre2 PDB 3mml chain D Region: 6 - 213 Aligned: 199 Modelled: 208 Confidence: 100.0% Identity: 37% PDB header:hydrolase Chain: D: PDB Molecule:allophanate hydrolase subunit 1; PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436 Phyre2 PDB 2phc chain B domain 1 Region: 88 - 216 Aligned: 129 Modelled: 129 Confidence: 100.0% Identity: 54% Fold: Cyclophilin-like Superfamily: Cyclophilin-like Family: PH0987 C-terminal domain-like Phyre2 PDB 2zp2 chain B Region: 86 - 216 Aligned: 122 Modelled: 131 Confidence: 100.0% Identity: 57% PDB header:transferase inhibitor Chain: B: PDB Molecule:kinase a inhibitor; PDBTitle: c-terminal domain of kipi from bacillus subtilis Phyre2 PDB 2kwa chain A Region: 3 - 86 Aligned: 84 Modelled: 84 Confidence: 99.5% Identity: 17% PDB header:transferase inhibitor Chain: A: PDB Molecule:kinase a inhibitor; PDBTitle: 1h, 13c and 15n backbone and side chain resonance assignments of the2 n-terminal domain of the histidine kinase inhibitor kipi from3 bacillus subtilis Phyre2 PDB 2phc chain B domain 2 Region: 6 - 77 Aligned: 72 Modelled: 72 Confidence: 99.5% Identity: 17% Fold: DCoH-like Superfamily: PH0987 N-terminal domain-like Family: PH0987 N-terminal domain-like Phyre2 PDB 2qf7 chain A Region: 101 - 192 Aligned: 89 Modelled: 92 Confidence: 94.4% Identity: 17% PDB header:ligase Chain: A: PDB Molecule:pyruvate carboxylase protein; PDBTitle: crystal structure of a complete multifunctional pyruvate carboxylase2 from rhizobium etli Phyre2 PDB 2j89 chain A Region: 31 - 109 Aligned: 76 Modelled: 76 Confidence: 88.3% Identity: 14% PDB header:oxidoreductase Chain: A: PDB Molecule:methionine sulfoxide reductase a; PDBTitle: functional and structural aspects of poplar cytosolic and2 plastidial type a methionine sulfoxide reductases Phyre2 PDB 1nwa chain A Region: 31 - 109 Aligned: 76 Modelled: 79 Confidence: 86.9% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra; PDBTitle: structure of mycobacterium tuberculosis methionine2 sulfoxide reductase a in complex with protein-bound3 methionine Phyre2 PDB 1nwa chain A Region: 31 - 109 Aligned: 76 Modelled: 79 Confidence: 86.9% Identity: 17% Fold: Ferredoxin-like Superfamily: Peptide methionine sulfoxide reductase Family: Peptide methionine sulfoxide reductase Phyre2 PDB 3mml chain E Region: 139 - 215 Aligned: 72 Modelled: 77 Confidence: 83.3% Identity: 24% PDB header:hydrolase Chain: E: PDB Molecule:allophanate hydrolase subunit 2; PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436 Phyre2 PDB 3e0m chain B Region: 31 - 109 Aligned: 76 Modelled: 76 Confidence: 78.8% Identity: 17% PDB header:oxidoreductase Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb PDBTitle: crystal structure of fusion protein of msra and msrb Phyre2 PDB 2rop chain A Region: 30 - 74 Aligned: 45 Modelled: 45 Confidence: 76.1% Identity: 7% PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 2; PDBTitle: solution structure of domains 3 and 4 of human atp7b Phyre2 PDB 3bqh chain A Region: 31 - 109 Aligned: 76 Modelled: 76 Confidence: 73.3% Identity: 22% PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb; PDBTitle: structure of the central domain (msra) of neisseria meningitidis pilb2 (oxidized form) Phyre2 PDB 1afi chain A Region: 30 - 74 Aligned: 45 Modelled: 45 Confidence: 72.7% Identity: 9% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 2ew9 chain A Region: 30 - 74 Aligned: 45 Modelled: 45 Confidence: 72.7% Identity: 11% PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 2; PDBTitle: solution structure of apowln5-6 Phyre2 PDB 2rml chain A Region: 30 - 74 Aligned: 45 Modelled: 45 Confidence: 71.5% Identity: 22% PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting p-type atpase copa; PDBTitle: solution structure of the n-terminal soluble domains of2 bacillus subtilis copa Phyre2 PDB 1p6t chain A domain 2 Region: 30 - 74 Aligned: 45 Modelled: 45 Confidence: 69.6% Identity: 22% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 1s6u chain A Region: 30 - 86 Aligned: 57 Modelled: 57 Confidence: 69.2% Identity: 7% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 1 c2phcB_ 2 c3oepA_ 3 c3mmlD_ 4 d2phcb1 5 c2zp2B_ 6 c2kwaA_ 7 d2phcb2 8 c2qf7A_ 9 c2j89A_ 10 c1nwaA_ 11 d1nwaa_ 12 c3mmlE_ 13 c3e0mB_ 14 c2ropA_ 15 c3bqhA_ 16 d1afia_ 17 c2ew9A_ 18 c2rmlA_ 19 d1p6ta2 20 d1s6ua_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2phcB_ 100.0 39 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein ph0987; PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii 2 c3oepA_ 100.0 38 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative uncharacterized protein ttha0988; PDBTitle: crystal structure of ttha0988 in space group p43212 3 c3mmlD_ 100.0 37 PDB header:hydrolase Chain: D: PDB Molecule:allophanate hydrolase subunit 1; PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436 4 d2phcb1 100.0 54 Fold:Cyclophilin-like Superfamily:Cyclophilin-like Family:PH0987 C-terminal domain-like 5 c2zp2B_ 100.0 57 PDB header:transferase inhibitor Chain: B: PDB Molecule:kinase a inhibitor; PDBTitle: c-terminal domain of kipi from bacillus subtilis 6 c2kwaA_ 99.5 17 PDB header:transferase inhibitor Chain: A: PDB Molecule:kinase a inhibitor; PDBTitle: 1h, 13c and 15n backbone and side chain resonance assignments of the2 n-terminal domain of the histidine kinase inhibitor kipi from3 bacillus subtilis 7 d2phcb2 99.5 17 Fold:DCoH-like Superfamily:PH0987 N-terminal domain-like Family:PH0987 N-terminal domain-like 8 c2qf7A_ 94.4 17 PDB header:ligase Chain: A: PDB Molecule:pyruvate carboxylase protein; PDBTitle: crystal structure of a complete multifunctional pyruvate carboxylase2 from rhizobium etli 9 c2j89A_ 88.3 14 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine sulfoxide reductase a; PDBTitle: functional and structural aspects of poplar cytosolic and2 plastidial type a methionine sulfoxide reductases 10 c1nwaA_ 86.9 17 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra; PDBTitle: structure of mycobacterium tuberculosis methionine2 sulfoxide reductase a in complex with protein-bound3 methionine 11 d1nwaa_ 86.9 17 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 12 c3mmlE_ 83.3 24 PDB header:hydrolase Chain: E: PDB Molecule:allophanate hydrolase subunit 2; PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436 13 c3e0mB_ 78.8 17 PDB header:oxidoreductase Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb PDBTitle: crystal structure of fusion protein of msra and msrb 14 c2ropA_ 76.1 7 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 2; PDBTitle: solution structure of domains 3 and 4 of human atp7b 15 c3bqhA_ 73.3 22 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb; PDBTitle: structure of the central domain (msra) of neisseria meningitidis pilb2 (oxidized form) 16 d1afia_ 72.7 9 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 17 c2ew9A_ 72.7 11 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 2; PDBTitle: solution structure of apowln5-6 18 c2rmlA_ 71.5 22 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting p-type atpase copa; PDBTitle: solution structure of the n-terminal soluble domains of2 bacillus subtilis copa 19 d1p6ta2 69.6 22 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 20 d1s6ua_ 69.2 7 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 21 d1q8la_ not modelled 68.1 4 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 22 c3dxsX_ not modelled 63.6 13 PDB header:hydrolase Chain: X: PDB Molecule:copper-transporting atpase ran1; PDBTitle: crystal structure of a copper binding domain from hma7, a p-2 type atpase 23 d1kvja_ not modelled 63.5 16 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 24 c2kkhA_ not modelled 62.3 13 PDB header:metal transport Chain: A: PDB Molecule:putative heavy metal transporter; PDBTitle: structure of the zinc binding domain of the atpase hma4 25 d2qifa1 not modelled 61.6 7 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 26 d1whza_ not modelled 61.6 20 Fold:dsRBD-like Superfamily:YcfA/nrd intein domain Family:YcfA-like 27 d1ff3a_ not modelled 61.6 10 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 28 c2ldiA_ not modelled 61.6 16 PDB header:hydrolase Chain: A: PDB Molecule:zinc-transporting atpase; PDBTitle: nmr solution structure of ziaan sub mutant 29 c2ga7A_ not modelled 61.0 7 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the copper(i) form of the third metal-2 binding domain of atp7a protein (menkes disease protein) 30 d1ff3c_ not modelled 60.6 10 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 31 c1yjrA_ not modelled 60.4 9 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the sixth soluble2 domain a69p mutant of menkes protein 32 c2l3mA_ not modelled 60.1 7 PDB header:metal binding protein Chain: A: PDB Molecule:copper-ion-binding protein; PDBTitle: solution structure of the putative copper-ion-binding protein from2 bacillus anthracis str. ames 33 c1fvaA_ not modelled 59.8 10 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase; PDBTitle: crystal structure of bovine methionine sulfoxide reductase 34 d1osda_ not modelled 59.7 7 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 35 c3pilA_ not modelled 58.5 12 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase; PDBTitle: crystal structure of mxr1 from saccharomyces cerevisiae in reduced2 form 36 c2ofhX_ not modelled 57.6 16 PDB header:hydrolase, membrane protein Chain: X: PDB Molecule:zinc-transporting atpase; PDBTitle: solution structure of the n-terminal domain of the zinc(ii) atpase2 ziaa in its apo form 37 c1y3kA_ not modelled 55.8 7 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the fifth domain of2 menkes protein 38 d1cpza_ not modelled 53.6 11 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 39 c2dy3B_ not modelled 51.4 25 PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from corynebacterium glutamicum 40 d1fvga_ not modelled 49.9 10 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 41 c1l0oC_ not modelled 46.6 35 PDB header:protein binding Chain: C: PDB Molecule:sigma factor; PDBTitle: crystal structure of the bacillus stearothermophilus anti-2 sigma factor spoiiab with the sporulation sigma factor3 sigmaf 42 d1l0oc_ not modelled 46.6 35 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 43 d2cbpa_ not modelled 41.7 27 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 44 d1rp3a1 not modelled 39.1 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma3 domain 45 c3j09A_ not modelled 37.9 4 PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa 46 c3gwqB_ not modelled 37.8 17 PDB header:lyase Chain: B: PDB Molecule:d-serine deaminase; PDBTitle: crystal structure of a putative d-serine deaminase (bxe_a4060) from2 burkholderia xenovorans lb400 at 2.00 a resolution 47 d1mdah_ not modelled 37.2 25 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Methylamine dehydrogenase, H-chain 48 d3cnxa1 not modelled 36.5 38 Fold:Cystatin-like Superfamily:NTF2-like Family:SAV4671-like 49 c2k6zA_ not modelled 34.9 36 PDB header:metal transport Chain: A: PDB Molecule:putative uncharacterized protein ttha1943; PDBTitle: solution structures of copper loaded form pcua (trans2 conformation of the peptide bond involving the nitrogen of3 p14) 50 d1pina2 not modelled 32.1 36 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 51 c1yw5A_ not modelled 31.5 21 PDB header:isomerase Chain: A: PDB Molecule:peptidyl prolyl cis/trans isomerase; PDBTitle: peptidyl-prolyl isomerase ess1 from candida albicans 52 d1m5ya3 not modelled 29.9 45 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 53 d1eq3a_ not modelled 29.4 36 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 54 d1mv8a1 not modelled 29.1 20 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:UDP-glucose/GDP-mannose dehydrogenase dimerisation domain 55 d2aw0a_ not modelled 28.9 9 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 56 d1ku2a1 not modelled 27.4 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma3 domain 57 c1zeqX_ not modelled 27.0 33 PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli 58 d1p6ta1 not modelled 26.7 18 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 59 d1dlja1 not modelled 26.5 25 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:UDP-glucose/GDP-mannose dehydrogenase dimerisation domain 60 c3h87D_ not modelled 26.4 26 PDB header:toxin/antitoxin Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis 61 c3h25A_ not modelled 26.2 12 PDB header:replication/dna Chain: A: PDB Molecule:replication protein b; PDBTitle: crystal structure of the catalytic domain of primase repb' in complex2 with initiator dna 62 d1z67a1 not modelled 25.4 13 Fold:YidB-like Superfamily:YidB-like Family:YidB-like 63 c2q3eH_ not modelled 24.2 8 PDB header:oxidoreductase Chain: H: PDB Molecule:udp-glucose 6-dehydrogenase; PDBTitle: structure of human udp-glucose dehydrogenase complexed with nadh and2 udp-glucose 64 c2rqsA_ not modelled 24.1 27 PDB header:isomerase Chain: A: PDB Molecule:parvulin-like peptidyl-prolyl isomerase; PDBTitle: 3d structure of pin from the psychrophilic archeon cenarcheaum2 symbiosum (cspin) 65 c3m9yB_ not modelled 23.4 23 PDB header:isomerase Chain: B: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of triosephosphate isomerase from methicillin2 resistant staphylococcus aureus at 1.9 angstrom resolution 66 c1f8aB_ not modelled 23.0 36 PDB header:isomerase Chain: B: PDB Molecule:peptidyl-prolyl cis-trans isomerase nima- PDBTitle: structural basis for the phosphoserine-proline recognition2 by group iv ww domains 67 c2l55A_ not modelled 22.7 50 PDB header:metal binding protein Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans 68 c1zk6A_ not modelled 22.5 36 PDB header:isomerase Chain: A: PDB Molecule:foldase protein prsa; PDBTitle: nmr solution structure of b. subtilis prsa ppiase 69 c2jzvA_ not modelled 22.4 18 PDB header:isomerase Chain: A: PDB Molecule:foldase protein prsa; PDBTitle: solution structure of s. aureus prsa-ppiase 70 d1wi9a_ not modelled 21.6 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PCI domain (PINT motif) 71 d1x9la_ not modelled 21.5 28 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:DR1885-like metal-binding protein Family:DR1885-like metal-binding protein 72 d1xnea_ not modelled 21.2 21 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 73 c1kzlA_ not modelled 20.6 13 PDB header:transferase Chain: A: PDB Molecule:riboflavin synthase; PDBTitle: riboflavin synthase from s.pombe bound to2 carboxyethyllumazine 74 c2odoC_ not modelled 19.9 26 PDB header:isomerase Chain: C: PDB Molecule:alanine racemase; PDBTitle: crystal structure of pseudomonas fluorescens alanine racemase 75 d1r2ra_ not modelled 19.8 18 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 76 d2ggpb1 not modelled 19.5 20 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 77 d1m6ja_ not modelled 19.4 23 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 78 d2pv2a1 not modelled 19.2 18 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 79 c3s6dA_ not modelled 19.0 14 PDB header:isomerase Chain: A: PDB Molecule:putative triosephosphate isomerase; PDBTitle: crystal structure of a putative triosephosphate isomerase from2 coccidioides immitis 80 d1n7va_ not modelled 18.3 40 Fold:Adsorption protein p2 Superfamily:Adsorption protein p2 Family:Adsorption protein p2 81 d1j6ya_ not modelled 18.2 27 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 82 c2k53A_ not modelled 18.1 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:a3dk08 protein; PDBTitle: nmr solution structure of a3dk08 protein from clostridium2 thermocellum: northeast structural genomics consortium3 target cmr9 83 c3a35B_ not modelled 18.1 14 PDB header:luminescent protein Chain: B: PDB Molecule:lumazine protein; PDBTitle: crystal structure of lump complexed with riboflavin 84 d2btma_ not modelled 18.1 26 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 85 c3gpkA_ not modelled 17.5 27 PDB header:isomerase Chain: A: PDB Molecule:ppic-type peptidyl-prolyl cis-trans isomerase; PDBTitle: crystal structure of ppic-type peptidyl-prolyl cis-trans isomerase2 domain at 1.55a resolution. 86 c3jt0B_ not modelled 16.9 21 PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of the c-terminal fragment (426-558)2 lamin-b1 from homo sapiens, northeast structural genomics3 consortium target hr5546a 87 c2kqaA_ not modelled 16.8 58 PDB header:toxin Chain: A: PDB Molecule:cerato-platanin; PDBTitle: the solution structure of the fungal elicitor cerato-platanin 88 d2rcda1 not modelled 16.8 28 Fold:Cystatin-like Superfamily:NTF2-like Family:BxeB1374-like 89 d1ndsa2 not modelled 16.6 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 90 c3kspA_ not modelled 16.5 27 PDB header:unknown function Chain: A: PDB Molecule:calcium/calmodulin-dependent kinase ii association domain; PDBTitle: crystal structure of a putative ca/calmodulin-dependent kinase ii2 association domain (exig_1688) from exiguobacterium sibiricum 255-153 at 2.59 a resolution 91 c2kt2A_ not modelled 16.4 7 PDB header:oxidoreductase Chain: A: PDB Molecule:mercuric reductase; PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase 92 c2pv3B_ not modelled 16.4 18 PDB header:isomerase Chain: B: PDB Molecule:chaperone sura; PDBTitle: crystallographic structure of sura fragment lacking the second2 peptidyl-prolyl isomerase domain complexed with peptide nftlkfwdifrk 93 c3cieC_ not modelled 16.4 27 PDB header:oxidoreductase Chain: C: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of glyceraldehyde 3-phosphate2 dehydrogenase from cryptosporidium parvum 94 d1jnsa_ not modelled 16.0 45 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 95 d1o7ia_ not modelled 16.0 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 96 c3krsB_ not modelled 15.9 22 PDB header:isomerase Chain: B: PDB Molecule:triosephosphate isomerase; PDBTitle: structure of triosephosphate isomerase from cryptosporidium parvum at2 1.55a resolution 97 c2kgjA_ not modelled 15.6 9 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase d; PDBTitle: solution structure of parvulin domain of ppid from e.coli 98 c2becA_ not modelled 15.6 29 PDB header:metal binding protein/transport protein Chain: A: PDB Molecule:calcineurin b homologous protein 2; PDBTitle: crystal structure of chp2 in complex with its binding2 region in nhe1 and insights into the mechanism of ph3 regulation 99 c3th6B_ not modelled 15.4 13 PDB header:isomerase Chain: B: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of triosephosphate isomerase from rhipicephalus2 (boophilus) microplus.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0