Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	S	P	N	I	L	L	T	R	I	D	N	R	L	V	H	G	Q	V	G	V	T	W	T	S	T	I	G	A	N	L	L	V	V	V	D	D	V	V	A	N	D	D	I	Q	Q	K	L	M	G	I	T	A	E	T	Y	G	F	G
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	R	F	F	T	I	E	K	T	I	N	V	I	G	K	A	A	P	H	Q	K	I	F	L	I	C	R	T	P	Q	T	V	R	K	L	V	E	G	G	I	D	L	K	D	V	N	V	G	N	M	H	F	S	E	G	K	K	Q	I	S
Secondary structure
SS confidence
Disorder																			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Sequence		S	K	V	Y	V	D	D	Q	D	L	T	D	L	R	F	I	K	Q	R	G	V	N	V	F	I	Q	D	V	P	G	D	Q	K	E	Q	I	P	D
Secondary structure
SS confidence
Disorder																																	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3eye chain A Region: 5 - 157 Aligned: 153 Modelled: 153 Confidence: 100.0% Identity: 100% PDB header:transferase Chain: A: PDB Molecule:pts system n-acetylgalactosamine-specific iib PDBTitle: crystal structure of pts system n-acetylgalactosamine-2 specific iib component 1 from escherichia coli Phyre2 PDB 1nrz chain A Region: 3 - 158 Aligned: 154 Modelled: 155 Confidence: 100.0% Identity: 30% Fold: PTS IIb component Superfamily: PTS IIb component Family: PTS IIb component Phyre2 PDB 1ble chain A Region: 3 - 158 Aligned: 154 Modelled: 156 Confidence: 100.0% Identity: 28% Fold: PTS IIb component Superfamily: PTS IIb component Family: PTS IIb component Phyre2 PDB 3lfj chain B Region: 3 - 158 Aligned: 155 Modelled: 156 Confidence: 100.0% Identity: 25% PDB header:transferase Chain: B: PDB Molecule:phosphotransferase system, mannose/fructose/n- PDBTitle: crystal structure of manxb from thermoanaerobacter tengcongensis Phyre2 PDB 3p3v chain B Region: 2 - 158 Aligned: 155 Modelled: 157 Confidence: 100.0% Identity: 34% PDB header:transferase Chain: B: PDB Molecule:pts system, n-acetylgalactosamine-specific iib component; PDBTitle: crystal structure of a pts dependent n-acetyl-galactosamine-iib2 component (agav, spy_0631) from streptococcus pyogenes at 1.65 a3 resolution Phyre2 PDB 1vsq chain C Region: 6 - 158 Aligned: 152 Modelled: 153 Confidence: 100.0% Identity: 34% PDB header:transferase Chain: C: PDB Molecule:mannose-specific phosphotransferase enzyme iib PDBTitle: solution nmr structure of the productive complex between2 iiamannose and iibmannose of the mannose transporter of3 the e. coli phosphotransferase system Phyre2 PDB 3l0g chain D Region: 65 - 145 Aligned: 64 Modelled: 66 Confidence: 66.3% Identity: 16% PDB header:transferase Chain: D: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of nicotinate-nucleotide pyrophosphorylase from2 ehrlichia chaffeensis at 2.05a resolution Phyre2 PDB 1qap chain A Region: 65 - 145 Aligned: 64 Modelled: 66 Confidence: 64.2% Identity: 8% PDB header:glycosyltransferase Chain: A: PDB Molecule:quinolinic acid phosphoribosyltransferase; PDBTitle: quinolinic acid phosphoribosyltransferase with bound2 quinolinic acid Phyre2 PDB 1r8j chain A domain 2 Region: 61 - 152 Aligned: 92 Modelled: 92 Confidence: 44.8% Identity: 12% Fold: Flavodoxin-like Superfamily: CheY-like Family: N-terminal domain of the circadian clock protein KaiA Phyre2 PDB 3rfa chain A Region: 34 - 151 Aligned: 113 Modelled: 118 Confidence: 38.7% Identity: 13% PDB header:oxidoreductase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase n; PDBTitle: x-ray structure of rlmn from escherichia coli in complex with s-2 adenosylmethionine Phyre2 PDB 1qpo chain A domain 1 Region: 65 - 111 Aligned: 45 Modelled: 47 Confidence: 34.4% Identity: 11% Fold: TIM beta/alpha-barrel Superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like Family: NadC C-terminal domain-like Phyre2 PDB 3pm7 chain A Region: 113 - 142 Aligned: 30 Modelled: 30 Confidence: 32.2% Identity: 3% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of ef_3132 protein from enterococcus faecalis at the2 resolution 2a, northeast structural genomics consortium target efr184 Phyre2 PDB 3ilh chain A Region: 29 - 74 Aligned: 45 Modelled: 46 Confidence: 29.4% Identity: 9% PDB header:transcription regulator Chain: A: PDB Molecule:two component response regulator; PDBTitle: crystal structure of two component response regulator from cytophaga2 hutchinsonii Phyre2 PDB 1qpo chain A Region: 65 - 111 Aligned: 45 Modelled: 47 Confidence: 28.4% Identity: 11% PDB header:transferase Chain: A: PDB Molecule:quinolinate acid phosphoribosyl transferase; PDBTitle: quinolinate phosphoribosyl transferase (qaprtase) apo-enzyme from2 mycobacterium tuberculosis Phyre2 PDB 2k1o chain A Region: 116 - 142 Aligned: 27 Modelled: 27 Confidence: 26.8% Identity: 22% PDB header:gene regulation Chain: A: PDB Molecule:putative; PDBTitle: nmr structure of helicobacter pylori jhp0511 (hp0564). Phyre2 PDB 1k68 chain A Region: 31 - 75 Aligned: 44 Modelled: 45 Confidence: 25.7% Identity: 9% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 1qap chain A domain 1 Region: 65 - 145 Aligned: 64 Modelled: 66 Confidence: 25.3% Identity: 6% Fold: TIM beta/alpha-barrel Superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like Family: NadC C-terminal domain-like Phyre2 PDB 3gl9 chain B Region: 30 - 79 Aligned: 46 Modelled: 50 Confidence: 23.3% Identity: 15% PDB header:signaling protein Chain: B: PDB Molecule:response regulator; PDBTitle: the structure of a histidine kinase-response regulator2 complex sheds light into two-component signaling and3 reveals a novel cis autophosphorylation mechanism Phyre2 PDB 3paj chain A Region: 65 - 145 Aligned: 64 Modelled: 64 Confidence: 22.5% Identity: 11% PDB header:transferase Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase, carboxylating; PDBTitle: 2.00 angstrom resolution crystal structure of a quinolinate2 phosphoribosyltransferase from vibrio cholerae o1 biovar eltor str.3 n16961 Phyre2 PDB 3obh chain A Region: 113 - 135 Aligned: 23 Modelled: 20 Confidence: 20.9% Identity: 4% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: x-ray crystal structure of protein sp_0782 (7-79) from streptococcus2 pneumoniae. northeast structural genomics consortium target spr104 Phyre2 1 c3eyeA_ 2 d1nrza_ 3 d1blea_ 4 c3lfjB_ 5 c3p3vB_ 6 c1vsqC_ 7 c3l0gD_ 8 c1qapA_ 9 d1r8ja2 10 c3rfaA_ 11 d1qpoa1 12 c3pm7A_ 13 c3ilhA_ 14 c1qpoA_ 15 c2k1oA_ 16 d1k68a_ 17 d1qapa1 18 c3gl9B_ 19 c3pajA_ 20 c3obhA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3eyeA_ 100.0 100 PDB header:transferase Chain: A: PDB Molecule:pts system n-acetylgalactosamine-specific iib PDBTitle: crystal structure of pts system n-acetylgalactosamine-2 specific iib component 1 from escherichia coli 2 d1nrza_ 100.0 30 Fold:PTS IIb component Superfamily:PTS IIb component Family:PTS IIb component 3 d1blea_ 100.0 28 Fold:PTS IIb component Superfamily:PTS IIb component Family:PTS IIb component 4 c3lfjB_ 100.0 25 PDB header:transferase Chain: B: PDB Molecule:phosphotransferase system, mannose/fructose/n- PDBTitle: crystal structure of manxb from thermoanaerobacter tengcongensis 5 c3p3vB_ 100.0 34 PDB header:transferase Chain: B: PDB Molecule:pts system, n-acetylgalactosamine-specific iib component; PDBTitle: crystal structure of a pts dependent n-acetyl-galactosamine-iib2 component (agav, spy_0631) from streptococcus pyogenes at 1.65 a3 resolution 6 c1vsqC_ 100.0 34 PDB header:transferase Chain: C: PDB Molecule:mannose-specific phosphotransferase enzyme iib PDBTitle: solution nmr structure of the productive complex between2 iiamannose and iibmannose of the mannose transporter of3 the e. coli phosphotransferase system 7 c3l0gD_ 66.3 16 PDB header:transferase Chain: D: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of nicotinate-nucleotide pyrophosphorylase from2 ehrlichia chaffeensis at 2.05a resolution 8 c1qapA_ 64.2 8 PDB header:glycosyltransferase Chain: A: PDB Molecule:quinolinic acid phosphoribosyltransferase; PDBTitle: quinolinic acid phosphoribosyltransferase with bound2 quinolinic acid 9 d1r8ja2 44.8 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:N-terminal domain of the circadian clock protein KaiA 10 c3rfaA_ 38.7 13 PDB header:oxidoreductase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase n; PDBTitle: x-ray structure of rlmn from escherichia coli in complex with s-2 adenosylmethionine 11 d1qpoa1 34.4 11 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 12 c3pm7A_ 32.2 3 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of ef_3132 protein from enterococcus faecalis at the2 resolution 2a, northeast structural genomics consortium target efr184 13 c3ilhA_ 29.4 9 PDB header:transcription regulator Chain: A: PDB Molecule:two component response regulator; PDBTitle: crystal structure of two component response regulator from cytophaga2 hutchinsonii 14 c1qpoA_ 28.4 11 PDB header:transferase Chain: A: PDB Molecule:quinolinate acid phosphoribosyl transferase; PDBTitle: quinolinate phosphoribosyl transferase (qaprtase) apo-enzyme from2 mycobacterium tuberculosis 15 c2k1oA_ 26.8 22 PDB header:gene regulation Chain: A: PDB Molecule:putative; PDBTitle: nmr structure of helicobacter pylori jhp0511 (hp0564). 16 d1k68a_ 25.7 9 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 17 d1qapa1 25.3 6 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 18 c3gl9B_ 23.3 15 PDB header:signaling protein Chain: B: PDB Molecule:response regulator; PDBTitle: the structure of a histidine kinase-response regulator2 complex sheds light into two-component signaling and3 reveals a novel cis autophosphorylation mechanism 19 c3pajA_ 22.5 11 PDB header:transferase Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase, carboxylating; PDBTitle: 2.00 angstrom resolution crystal structure of a quinolinate2 phosphoribosyltransferase from vibrio cholerae o1 biovar eltor str.3 n16961 20 c3obhA_ 20.9 4 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: x-ray crystal structure of protein sp_0782 (7-79) from streptococcus2 pneumoniae. northeast structural genomics consortium target spr104 21 c3khtA_ not modelled 19.6 10 PDB header:signaling protein Chain: A: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator from hahella chejuensis 22 d1t0kb_ not modelled 18.8 10 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 23 c2yxxA_ not modelled 18.1 16 PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure analysis of diaminopimelate decarboxylate (lysa) 24 c3eqzB_ not modelled 17.7 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of a response regulator from colwellia2 psychrerythraea 25 d1mb3a_ not modelled 16.3 13 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 26 c2oqrA_ not modelled 15.8 20 PDB header:transcription,signaling protein Chain: A: PDB Molecule:sensory transduction protein regx3; PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis 27 d2pl1a1 not modelled 15.2 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 28 c3n53B_ not modelled 14.2 9 PDB header:transcription Chain: B: PDB Molecule:response regulator receiver modulated diguanylate cyclase; PDBTitle: crystal structure of a response regulator receiver modulated2 diguanylate cyclase from pelobacter carbinolicus 29 c2qv0A_ not modelled 14.1 11 PDB header:transcription Chain: A: PDB Molecule:protein mrke; PDBTitle: crystal structure of the response regulatory domain of2 protein mrke from klebsiella pneumoniae 30 c3h5iA_ not modelled 13.6 13 PDB header:transcription Chain: A: PDB Molecule:response regulator/sensory box protein/ggdef PDBTitle: crystal structure of the n-terminal domain of a response2 regulator/sensory box/ggdef 3-domain protein from3 carboxydothermus hydrogenoformans 31 d1ajza_ not modelled 13.6 19 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 32 c2a5hC_ not modelled 13.3 15 PDB header:isomerase Chain: C: PDB Molecule:l-lysine 2,3-aminomutase; PDBTitle: 2.1 angstrom x-ray crystal structure of lysine-2,3-aminomutase from2 clostridium subterminale sb4, with michaelis analog (l-alpha-lysine3 external aldimine form of pyridoxal-5'-phosphate). 33 d1k66a_ not modelled 12.8 17 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 34 c1rnlA_ not modelled 12.8 15 PDB header:signal transduction protein Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl; PDBTitle: the nitrate/nitrite response regulator protein narl from narl 35 d1kgsa1 not modelled 12.4 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 36 d2i7pa1 not modelled 11.8 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 37 c3cnbC_ not modelled 11.7 9 PDB header:dna binding protein Chain: C: PDB Molecule:dna-binding response regulator, merr family; PDBTitle: crystal structure of signal receiver domain of dna binding response2 regulator protein (merr) from colwellia psychrerythraea 34h 38 d1bs0a_ not modelled 11.5 13 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 39 c2y5sA_ not modelled 11.3 16 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: crystal structure of burkholderia cenocepacia dihydropteroate2 synthase complexed with 7,8-dihydropteroate. 40 d1t6t1_ not modelled 11.1 11 Fold:Toprim domain Superfamily:Toprim domain Family:Toprim domain 41 c3btnA_ not modelled 11.0 14 PDB header:biosynthetic protein Chain: A: PDB Molecule:antizyme inhibitor 1; PDBTitle: crystal structure of antizyme inhibitor, an ornithine2 decarboxylase homologous protein 42 c3m6mF_ not modelled 10.9 18 PDB header:lyase/transferase Chain: F: PDB Molecule:sensory/regulatory protein rpfc; PDBTitle: crystal structure of rpff complexed with rec domain of rpfc 43 d2f1fa1 not modelled 10.8 13 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 44 d1a04a2 not modelled 10.7 15 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 45 c3cz5B_ not modelled 10.1 12 PDB header:transcription regulator Chain: B: PDB Molecule:two-component response regulator, luxr family; PDBTitle: crystal structure of two-component response regulator, luxr family,2 from aurantimonas sp. si85-9a1 46 c3cg4A_ not modelled 10.0 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey-like); PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1 47 d1ad1a_ not modelled 9.9 24 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 48 d1dbwa_ not modelled 9.8 6 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 49 d2fgca2 not modelled 9.8 19 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 50 c3hebB_ not modelled 9.7 16 PDB header:transcription regulator Chain: B: PDB Molecule:response regulator receiver domain protein (chey); PDBTitle: crystal structure of response regulator receiver domain from2 rhodospirillum rubrum 51 d1oqya2 not modelled 9.6 18 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 52 d1u0sy_ not modelled 9.5 13 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 53 c2rjnA_ not modelled 9.5 13 PDB header:hydrolase Chain: A: PDB Molecule:response regulator receiver:metal-dependent PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis 54 d1xxaa_ not modelled 9.3 33 Fold:DCoH-like Superfamily:C-terminal domain of arginine repressor Family:C-terminal domain of arginine repressor 55 d2obba1 not modelled 9.3 7 Fold:HAD-like Superfamily:HAD-like Family:BT0820-like 56 c3hv2B_ not modelled 9.3 6 PDB header:signaling protein Chain: B: PDB Molecule:response regulator/hd domain protein; PDBTitle: crystal structure of signal receiver domain of hd domain-2 containing protein from pseudomonas fluorescens pf-5 57 d2i7na2 not modelled 9.1 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 58 d2pc6a2 not modelled 8.8 8 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 59 c3c3wB_ not modelled 8.7 15 PDB header:transcription Chain: B: PDB Molecule:two component transcriptional regulatory protein devr; PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr 60 c2yr1B_ not modelled 8.6 19 PDB header:lyase Chain: B: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: crystal structure of 3-dehydroquinate dehydratase from geobacillus2 kaustophilus hta426 61 d2p5ma1 not modelled 8.5 29 Fold:DCoH-like Superfamily:C-terminal domain of arginine repressor Family:C-terminal domain of arginine repressor 62 c3cg0A_ not modelled 8.4 12 PDB header:lyase Chain: A: PDB Molecule:response regulator receiver modulated diguanylate cyclase PDBTitle: crystal structure of signal receiver domain of modulated diguanylate2 cyclase from desulfovibrio desulfuricans g20, an example of alternate3 folding 63 c3khdC_ not modelled 8.3 15 PDB header:transferase Chain: C: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of pff1300w. 64 c3kyiB_ not modelled 8.3 12 PDB header:transferase Chain: B: PDB Molecule:chey6 protein; PDBTitle: crystal structure of the phosphorylated p1 domain of chea3 in complex2 with chey6 from r. sphaeroides 65 c2y7eA_ not modelled 8.3 12 PDB header:lyase Chain: A: PDB Molecule:3-keto-5-aminohexanoate cleavage enzyme; PDBTitle: crystal structure of the 3-keto-5-aminohexanoate cleavage enzyme2 (kce) from candidatus cloacamonas acidaminovorans (tetragonal form) 66 c3hzhA_ not modelled 8.1 14 PDB header:signaling protein Chain: A: PDB Molecule:chemotaxis response regulator (chey-3); PDBTitle: crystal structure of the chex-chey-bef3-mg+2 complex from2 borrelia burgdorferi 67 c2qxyB_ not modelled 8.1 18 PDB header:transcription Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of a response regulator from thermotoga2 maritima 68 d1b4ba_ not modelled 8.0 29 Fold:DCoH-like Superfamily:C-terminal domain of arginine repressor Family:C-terminal domain of arginine repressor 69 c3c3mA_ not modelled 8.0 23 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1 70 c3icuA_ not modelled 8.0 16 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase rnf128; PDBTitle: protease-associated domain of the e3 ligase grail 71 c3cagF_ not modelled 7.8 29 PDB header:dna binding protein Chain: F: PDB Molecule:arginine repressor; PDBTitle: crystal structure of the oligomerization domain hexamer of the2 arginine repressor protein from mycobacterium tuberculosis in complex3 with 9 arginines. 72 d2guka1 not modelled 7.8 17 Fold:PG1857-like Superfamily:PG1857-like Family:PG1857-like 73 c1a2oB_ not modelled 7.8 15 PDB header:bacterial chemotaxis Chain: B: PDB Molecule:cheb methylesterase; PDBTitle: structural basis for methylesterase cheb regulation by a2 phosphorylation-activated domain 74 d1a2oa1 not modelled 7.8 14 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 75 d1o57a2 not modelled 7.7 6 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 76 c3eywA_ not modelled 7.6 19 PDB header:transport protein Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff 77 d1i3ca_ not modelled 7.2 13 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 78 c1k3rA_ not modelled 7.2 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein mt0001; PDBTitle: crystal structure of the methyltransferase with a knot from2 methanobacterium thermoautotrophicum 79 c2zayA_ not modelled 7.2 23 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator from desulfuromonas2 acetoxidans 80 c1dd9A_ not modelled 7.0 12 PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: structure of the dnag catalytic core 81 d1dd9a_ not modelled 7.0 12 Fold:DNA primase core Superfamily:DNA primase core Family:DNA primase DnaG catalytic core 82 c3eulB_ not modelled 7.0 16 PDB header:transcription Chain: B: PDB Molecule:possible nitrate/nitrite response transcriptional PDBTitle: structure of the signal receiver domain of the putative2 response regulator narl from mycobacterium tuberculosis 83 d1dcfa_ not modelled 6.7 14 Fold:Flavodoxin-like Superfamily:CheY-like Family:Receiver domain of the ethylene receptor 84 c2q97T_ not modelled 6.5 20 PDB header:structural protein/cell invasion Chain: T: PDB Molecule:toxofilin; PDBTitle: complex of mammalian actin with toxofilin from toxoplasma gondii 85 c3f6cB_ not modelled 6.4 9 PDB header:dna binding protein Chain: B: PDB Molecule:positive transcription regulator evga; PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli 86 c1o57A_ not modelled 6.4 6 PDB header:dna binding protein Chain: A: PDB Molecule:pur operon repressor; PDBTitle: crystal structure of the purine operon repressor of2 bacillus subtilis 87 c3luaA_ not modelled 6.1 8 PDB header:transcription regulator Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of a signal receiver domain of two component signal2 transduction (histidine kinase) from clostridium thermocellum 88 c3jpyA_ not modelled 6.1 15 PDB header:transport protein Chain: A: PDB Molecule:glutamate [nmda] receptor subunit epsilon-2; PDBTitle: crystal structure of the zinc-bound amino terminal domain of the nmda2 receptor subunit nr2b 89 c2b7pA_ not modelled 6.1 20 PDB header:transferase Chain: A: PDB Molecule:probable nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of quinolinic acid phosphoribosyltransferase from2 helicobacter pylori 90 c2jrlA_ not modelled 6.0 18 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: solution structure of the beryllofluoride-activated ntrc4 receiver2 domain dimer 91 c3lteH_ not modelled 6.0 13 PDB header:transcription Chain: H: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator (signal receiver domain) from2 bermanella marisrubri 92 d1mzva_ not modelled 6.0 23 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 93 c2is8A_ not modelled 6.0 12 PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8 94 c3jteA_ not modelled 6.0 10 PDB header:protein binding Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver domain2 protein from clostridium thermocellum 95 c1b4aA_ not modelled 5.9 29 PDB header:repressor Chain: A: PDB Molecule:arginine repressor; PDBTitle: structure of the arginine repressor from bacillus stearothermophilus 96 d1k3ra2 not modelled 5.8 11 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:Hypothetical protein MTH1 (MT0001), dimerisation domain 97 c2hwvA_ not modelled 5.8 11 PDB header:transcription Chain: A: PDB Molecule:dna-binding response regulator vicr; PDBTitle: crystal structure of an essential response regulator dna binding2 domain, vicrc in enterococcus faecalis, a member of the yycf3 subfamily. 98 c2k5jB_ not modelled 5.7 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein yiif; PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1 99 d1dz3a_ not modelled 5.7 6 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related

Binding site prediction

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0