Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	V	K	K	A	I	V	T	A	M	A	V	I	S	L	F	T	L	M	G	C	N	N	R	A	E	V	D	T	L	S	P	A	Q	A	A	E	L	K	P	M	P	Q	S	W	R	G	V	L	P	C	A	D	C	E	G	I	E	T	S
Secondary structure
SS confidence
Disorder		?	?	?	?																?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	F	L	E	K	D	G	T	W	V	M	N	E	R	Y	L	G	A	R	E	E	P	S	S	F	A	S	Y	G	T	W	A	R	T	A	D	K	L	V	L	T	D	S	K	G	E	K	S	Y	Y	R	A	K	G	D	A	L	E	M	L
Secondary structure
SS confidence
Disorder																	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	R	E	G	N	P	I	E	S	Q	F	N	Y	T	L	E	A	A	Q	S	S	L	P	M	T	P	M	T	L	R	G	M	Y	F	Y	M	A	D	A	A	T	F	T	D	C	A	T	G	K	R	F	M	V	A	N	N	A	E	L	E
Secondary structure
SS confidence
Disorder			?	?	?	?	?	?	?	?	?						?		?	?	?	?	?	?	?	?	?	?	?	?	?										?	?	?												?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Sequence		R	S	Y	L	A	A	R	G	H	S	E	K	P	V	L	L	S	V	E	G	H	F	T	L	E	G	N	P	D	T	G	A	P	T	K	V	L	A	P	D	T	A	G	K	F	Y	P	N	Q	D	C	S	S	L	G	Q
Secondary structure
SS confidence
Disorder						?	?	?	?																	?	?	?	?	?	?	?	?	?	?						?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2z4h chain B Region: 41 - 234 Aligned: 194 Modelled: 194 Confidence: 100.0% Identity: 100% PDB header:signaling protein activator Chain: B: PDB Molecule:copper homeostasis protein cutf; PDBTitle: crystal structure of the cpx pathway activator nlpe from2 escherichia coli Phyre2 PDB 3lhn chain B Region: 33 - 137 Aligned: 101 Modelled: 105 Confidence: 100.0% Identity: 36% PDB header:lipid binding protein Chain: B: PDB Molecule:lipoprotein; PDBTitle: crystal structure of putative lipoprotein (np_718719.1) from2 shewanella oneidensis at 1.42 a resolution Phyre2 PDB 1jiw chain I Region: 91 - 139 Aligned: 43 Modelled: 49 Confidence: 74.1% Identity: 16% Fold: Streptavidin-like Superfamily: beta-Barrel protease inhibitors Family: Metalloprotease inhibitor Phyre2 PDB 3ge2 chain A Region: 33 - 126 Aligned: 80 Modelled: 94 Confidence: 65.8% Identity: 16% PDB header:lipoprotein Chain: A: PDB Molecule:lipoprotein, putative; PDBTitle: crystal structure of putative lipoprotein sp_0198 from streptococcus2 pneumoniae Phyre2 PDB 3p02 chain A Region: 88 - 205 Aligned: 118 Modelled: 114 Confidence: 34.4% Identity: 8% PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein of unknown function (bacova_00267) from2 bacteroides ovatus at 1.55 a resolution Phyre2 PDB 2q4m chain A domain 1 Region: 91 - 127 Aligned: 35 Modelled: 37 Confidence: 27.2% Identity: 29% Fold: Tubby C-terminal domain-like Superfamily: Tubby C-terminal domain-like Family: At5g01750-like Phyre2 PDB 1zxu chain A Region: 91 - 127 Aligned: 35 Modelled: 37 Confidence: 27.2% Identity: 29% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:at5g01750 protein; PDBTitle: x-ray structure of protein from arabidopsis thaliana2 at5g01750 Phyre2 PDB 3o0r chain C Region: 2 - 58 Aligned: 53 Modelled: 57 Confidence: 22.9% Identity: 11% PDB header:immune system/oxidoreductase Chain: C: PDB Molecule:nitric oxide reductase subunit c; PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment Phyre2 PDB 1brv chain A Region: 49 - 63 Aligned: 15 Modelled: 15 Confidence: 18.2% Identity: 47% PDB header:glycoprotein Chain: A: PDB Molecule:protein g; PDBTitle: solution nmr structure of the immunodominant region of2 protein g of bovine respiratory syncytial virus, 483 structures Phyre2 PDB 1jhn chain A domain 4 Region: 59 - 72 Aligned: 14 Modelled: 14 Confidence: 18.0% Identity: 21% Fold: Concanavalin A-like lectins/glucanases Superfamily: Concanavalin A-like lectins/glucanases Family: Calnexin/calreticulin Phyre2 PDB 1hxr chain A Region: 49 - 55 Aligned: 7 Modelled: 7 Confidence: 17.6% Identity: 86% Fold: Mss4-like Superfamily: Mss4-like Family: RabGEF Mss4 Phyre2 PDB 3p43 chain A Region: 43 - 116 Aligned: 68 Modelled: 74 Confidence: 17.4% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: structure and activities of archaeal members of the ligd 3'2 phosphoesterase dna repair enzyme superfamily Phyre2 PDB 2fu5 chain A domain 1 Region: 49 - 55 Aligned: 7 Modelled: 7 Confidence: 17.4% Identity: 86% Fold: Mss4-like Superfamily: Mss4-like Family: RabGEF Mss4 Phyre2 PDB 1rc9 chain A domain 2 Region: 50 - 56 Aligned: 7 Modelled: 7 Confidence: 15.3% Identity: 57% Fold: Crisp domain-like Superfamily: Crisp domain-like Family: Crisp domain Phyre2 PDB 1nui chain A Region: 44 - 69 Aligned: 25 Modelled: 26 Confidence: 15.3% Identity: 24% PDB header:replication Chain: A: PDB Molecule:dna primase/helicase; PDBTitle: crystal structure of the primase fragment of bacteriophage t7 primase-2 helicase protein Phyre2 PDB 2fm8 chain A domain 1 Region: 188 - 210 Aligned: 23 Modelled: 23 Confidence: 15.2% Identity: 17% Fold: Secretion chaperone-like Superfamily: Type III secretory system chaperone-like Family: Type III secretory system chaperone Phyre2 PDB 2hh8 chain A domain 1 Region: 106 - 140 Aligned: 35 Modelled: 35 Confidence: 15.1% Identity: 6% Fold: YdfO-like Superfamily: YdfO-like Family: YdfO-like Phyre2 PDB 2l6n chain A Region: 50 - 56 Aligned: 7 Modelled: 7 Confidence: 14.1% Identity: 43% PDB header:structure genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein yp_001092504.1; PDBTitle: nmr solution structure of the protein yp_001092504.1 Phyre2 PDB 3hyx chain C Region: 48 - 56 Aligned: 9 Modelled: 9 Confidence: 13.9% Identity: 56% PDB header:oxidoreductase Chain: C: PDB Molecule:sulfide-quinone reductase; PDBTitle: 3-d x-ray structure of the sulfide:quinone oxidoreductase from aquifex2 aeolicus in complex with aurachin c Phyre2 PDB 3rg0 chain A Region: 59 - 72 Aligned: 14 Modelled: 14 Confidence: 13.8% Identity: 21% PDB header:chaperone Chain: A: PDB Molecule:calreticulin; PDBTitle: structural and functional relationships between the lectin and arm2 domains of calreticulin Phyre2 1 c2z4hB_ 2 c3lhnB_ 3 d1jiwi_ 4 c3ge2A_ 5 c3p02A_ 6 d2q4ma1 7 c1zxuA_ 8 c3o0rC_ 9 c1brvA_ 10 d1jhna4 11 d1hxra_ 12 c3p43A_ 13 d2fu5a1 14 d1rc9a2 15 c1nuiA_ 16 d2fm8a1 17 d2hh8a1 18 c2l6nA_ 19 c3hyxC_ 20 c3rg0A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2z4hB_ 100.0 100 PDB header:signaling protein activator Chain: B: PDB Molecule:copper homeostasis protein cutf; PDBTitle: crystal structure of the cpx pathway activator nlpe from2 escherichia coli 2 c3lhnB_ 100.0 36 PDB header:lipid binding protein Chain: B: PDB Molecule:lipoprotein; PDBTitle: crystal structure of putative lipoprotein (np_718719.1) from2 shewanella oneidensis at 1.42 a resolution 3 d1jiwi_ 74.1 16 Fold:Streptavidin-like Superfamily:beta-Barrel protease inhibitors Family:Metalloprotease inhibitor 4 c3ge2A_ 65.8 16 PDB header:lipoprotein Chain: A: PDB Molecule:lipoprotein, putative; PDBTitle: crystal structure of putative lipoprotein sp_0198 from streptococcus2 pneumoniae 5 c3p02A_ 34.4 8 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein of unknown function (bacova_00267) from2 bacteroides ovatus at 1.55 a resolution 6 d2q4ma1 27.2 29 Fold:Tubby C-terminal domain-like Superfamily:Tubby C-terminal domain-like Family:At5g01750-like 7 c1zxuA_ 27.2 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:at5g01750 protein; PDBTitle: x-ray structure of protein from arabidopsis thaliana2 at5g01750 8 c3o0rC_ 22.9 11 PDB header:immune system/oxidoreductase Chain: C: PDB Molecule:nitric oxide reductase subunit c; PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment 9 c1brvA_ 18.2 47 PDB header:glycoprotein Chain: A: PDB Molecule:protein g; PDBTitle: solution nmr structure of the immunodominant region of2 protein g of bovine respiratory syncytial virus, 483 structures 10 d1jhna4 18.0 21 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Calnexin/calreticulin 11 d1hxra_ 17.6 86 Fold:Mss4-like Superfamily:Mss4-like Family:RabGEF Mss4 12 c3p43A_ 17.4 19 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: structure and activities of archaeal members of the ligd 3'2 phosphoesterase dna repair enzyme superfamily 13 d2fu5a1 17.4 86 Fold:Mss4-like Superfamily:Mss4-like Family:RabGEF Mss4 14 d1rc9a2 15.3 57 Fold:Crisp domain-like Superfamily:Crisp domain-like Family:Crisp domain 15 c1nuiA_ 15.3 24 PDB header:replication Chain: A: PDB Molecule:dna primase/helicase; PDBTitle: crystal structure of the primase fragment of bacteriophage t7 primase-2 helicase protein 16 d2fm8a1 15.2 17 Fold:Secretion chaperone-like Superfamily:Type III secretory system chaperone-like Family:Type III secretory system chaperone 17 d2hh8a1 15.1 6 Fold:YdfO-like Superfamily:YdfO-like Family:YdfO-like 18 c2l6nA_ 14.1 43 PDB header:structure genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein yp_001092504.1; PDBTitle: nmr solution structure of the protein yp_001092504.1 19 c3hyxC_ 13.9 56 PDB header:oxidoreductase Chain: C: PDB Molecule:sulfide-quinone reductase; PDBTitle: 3-d x-ray structure of the sulfide:quinone oxidoreductase from aquifex2 aeolicus in complex with aurachin c 20 c3rg0A_ 13.8 21 PDB header:chaperone Chain: A: PDB Molecule:calreticulin; PDBTitle: structural and functional relationships between the lectin and arm2 domains of calreticulin 21 c2bx9J_ not modelled 12.9 38 PDB header:transcription regulation Chain: J: PDB Molecule:tryptophan rna-binding attenuator protein-inhibitory PDBTitle: crystal structure of b.subtilis anti-trap protein, an2 antagonist of trap-rna interactions 22 d1j8ra_ not modelled 12.6 16 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:PapG adhesin receptor-binding domain 23 c2l6pA_ not modelled 11.5 43 PDB header:structure genomics, unknown function Chain: A: PDB Molecule:phac1, phac2 and phad genes; PDBTitle: nmr solution structure of the protein np_253742.1 24 c2ktsA_ not modelled 10.8 25 PDB header:chaperone Chain: A: PDB Molecule:heat shock protein hslj; PDBTitle: nmr structure of the protein np_415897.1 25 c1jhnA_ not modelled 10.4 21 PDB header:chaperone Chain: A: PDB Molecule:calnexin; PDBTitle: crystal structure of the lumenal domain of calnexin 26 d1oyvi_ not modelled 10.0 29 Fold:Plant proteinase inhibitors Superfamily:Plant proteinase inhibitors Family:Plant proteinase inhibitors 27 d1r7aa1 not modelled 9.9 30 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 28 c2ovsB_ not modelled 9.8 8 PDB header:gene regulation, ligand binding protein Chain: B: PDB Molecule:l0044; PDBTitle: crystal strcuture of a type three secretion system protein 29 d2eppa1 not modelled 9.2 45 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 30 d2dsya1 not modelled 8.8 24 Fold:TTHA1013/TTHA0281-like Superfamily:TTHA1013/TTHA0281-like Family:TTHA0281-like 31 c2dcrA_ not modelled 8.2 18 PDB header:transferase Chain: A: PDB Molecule:proto-oncogene tyrosine-protein kinase fes/fps; PDBTitle: fully automated solution structure determination of the fes2 sh2 domain 32 c3kg9A_ not modelled 8.1 11 PDB header:lyase Chain: A: PDB Molecule:curk; PDBTitle: dehydratase domain from curk module of curacin polyketide synthase 33 d1vlya1 not modelled 8.1 16 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:Aminomethyltransferase beta-barrel domain Family:Aminomethyltransferase beta-barrel domain 34 d2aqaa1 not modelled 8.1 40 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 35 d2bpa2_ not modelled 8.0 29 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Microviridae-like VP 36 c3luuA_ not modelled 7.9 60 PDB header:biosynthetic protein Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein with unknown function which belongs to2 pfam duf971 family (afe_2189) from acidithiobacillus ferrooxidans3 atcc 23270 at 1.93 a resolution 37 d1w0na_ not modelled 7.9 25 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Family 36 carbohydrate binding module, CBM36 38 d1o6da_ not modelled 7.9 24 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 39 d1wgea1 not modelled 7.9 38 Fold:Rubredoxin-like Superfamily:CSL zinc finger Family:CSL zinc finger 40 d1gff2_ not modelled 7.8 36 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Microviridae-like VP 41 c1n1uA_ not modelled 7.6 25 PDB header:antibiotic Chain: A: PDB Molecule:kalata b1; PDBTitle: nmr structure of [ala1,15]kalata b1 42 d1n1ua_ not modelled 7.6 25 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Cyclotides Family:Kalata B1 43 c1r8oA_ not modelled 7.6 38 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:kunitz trypsin inhibitor; PDBTitle: crystal structure of an unusual kunitz-type trypsin inhibitor from2 copaifera langsdorffii seeds 44 c3cjtP_ not modelled 7.5 6 PDB header:transferase/ribosomal protein Chain: P: PDB Molecule:50s ribosomal protein l11; PDBTitle: ribosomal protein l11 methyltransferase (prma) in complex with2 dimethylated ribosomal protein l11 45 c3ld0Q_ not modelled 7.4 38 PDB header:gene regulation Chain: Q: PDB Molecule:inhibitor of trap, regulated by t-box (trp) sequence rtpa; PDBTitle: crystal structure of b.licheniformis anti-trap protein, an antagonist2 of trap-rna interactions 46 d2gvia2 not modelled 7.4 67 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:FwdE C-terminal domain-like 47 c3n9dA_ not modelled 7.3 17 PDB header:ligase Chain: A: PDB Molecule:probable atp-dependent dna ligase; PDBTitle: monoclinic structure of p. aeruginosa ligd phosphoesterase domain 48 d1mila_ not modelled 7.2 25 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 49 d1ns5a_ not modelled 7.2 24 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 50 c2knnA_ not modelled 7.2 50 PDB header:plant protein Chain: A: PDB Molecule:cycloviolacin-o2; PDBTitle: solution structure of the cyclotide cycloviolacin o2 with2 glu6 methylated (cyo2me) 51 c2qn4B_ not modelled 7.2 29 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:alpha-amylase/subtilisin inhibitor; PDBTitle: structure and function study of rice bifunctional alpha-2 amylase/subtilisin inhibitor from oryza sativa 52 d1to0a_ not modelled 7.1 24 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 53 d1vh0a_ not modelled 7.1 18 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 54 c2f2iA_ not modelled 6.8 25 PDB header:antimicrobial protein Chain: A: PDB Molecule:kalata-b1; PDBTitle: solution structure of [p20d,v21k]-kalata b1 55 d1avwb_ not modelled 6.7 57 Fold:beta-Trefoil Superfamily:STI-like Family:Kunitz (STI) inhibitors 56 d1nb1a_ not modelled 6.6 25 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Cyclotides Family:Kalata B1 57 d1ha8a_ not modelled 6.6 63 Fold:Pheromone ER-23 Superfamily:Pheromone ER-23 Family:Pheromone ER-23 58 d1lrva_ not modelled 6.6 38 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Leucine-rich repeat variant 59 c3o6uB_ not modelled 6.6 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein cpe2226; PDBTitle: crystal structure of cpe2226 protein from clostridium perfringens.2 northeast structural genomics consortium target cpr195 60 d1fnoa3 not modelled 6.5 9 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 61 d1pt4a_ not modelled 6.5 25 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Cyclotides Family:Kalata B1 62 c2l6lA_ not modelled 6.5 18 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 24; PDBTitle: solution structure of human j-protein co-chaperone, dph4 63 c2kzxA_ not modelled 6.5 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of a3dht5 from clostridium thermocellum,2 northeast structural genomics consortium target cmr116 64 d1cf1a1 not modelled 6.4 29 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Arrestin/Vps26-like 65 c2f2jA_ not modelled 6.4 25 PDB header:antimicrobial protein Chain: A: PDB Molecule:kalata-b1; PDBTitle: solution structure of [w19k, p20n, v21k]-kalata b1 66 c2zkrk_ not modelled 6.3 9 PDB header:ribosomal protein/rna Chain: K: PDB Molecule:rna expansion segment es19; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 67 c2khbA_ not modelled 6.3 25 PDB header:antimicrobial protein Chain: A: PDB Molecule:kalata-b1; PDBTitle: solution structure of linear kalata b1 (loop 6) 68 c1iebD_ not modelled 6.0 20 PDB header:histocompatibility antigen Chain: D: PDB Molecule:mhc class ii i-ek; PDBTitle: histocompatibility antigen 69 d1m3va1 not modelled 6.0 57 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 70 d1r8na_ not modelled 5.8 36 Fold:beta-Trefoil Superfamily:STI-like Family:Kunitz (STI) inhibitors 71 d1mmsa2 not modelled 5.7 6 Fold:Ribosomal L11/L12e N-terminal domain Superfamily:Ribosomal L11/L12e N-terminal domain Family:Ribosomal L11/L12e N-terminal domain 72 c2xvoB_ not modelled 5.7 32 PDB header:structural genomics Chain: B: PDB Molecule:sso1725; PDBTitle: sso1725, a protein involved in the crispr/cas pathway 73 d1vqok1 not modelled 5.7 14 Fold:Ribosomal protein L14 Superfamily:Ribosomal protein L14 Family:Ribosomal protein L14 74 c3swrA_ not modelled 5.6 14 PDB header:transferase Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 1; PDBTitle: structure of human dnmt1 (601-1600) in complex with sinefungin 75 d3cjsb1 not modelled 5.6 6 Fold:Ribosomal L11/L12e N-terminal domain Superfamily:Ribosomal L11/L12e N-terminal domain Family:Ribosomal L11/L12e N-terminal domain 76 d1v1qa_ not modelled 5.5 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 77 d2hz5a1 not modelled 5.4 26 Fold:Profilin-like Superfamily:Roadblock/LC7 domain Family:Roadblock/LC7 domain 78 c2jmbA_ not modelled 5.4 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein atu4866; PDBTitle: solution structure of the protein atu4866 from agrobacterium2 tumefaciens 79 d1whia_ not modelled 5.4 23 Fold:Ribosomal protein L14 Superfamily:Ribosomal protein L14 Family:Ribosomal protein L14 80 d1sg1x2 not modelled 5.3 31 Fold:TNF receptor-like Superfamily:TNF receptor-like Family:TNF receptor-like 81 c2p57A_ not modelled 5.3 55 PDB header:metal binding protein Chain: A: PDB Molecule:gtpase-activating protein znf289; PDBTitle: gap domain of znf289, an id1-regulated zinc finger protein 82 c2p3yA_ not modelled 5.3 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein vpa0735; PDBTitle: crystal structure of vpa0735 from vibrio parahaemolyticus. northeast2 structural genomics target vpr109 83 d2p3ya1 not modelled 5.3 25 Fold:VPA0735-like Superfamily:VPA0735-like Family:VPA0735-like 84 d2f2ha1 not modelled 5.3 27 Fold:Putative glucosidase YicI, C-terminal domain Superfamily:Putative glucosidase YicI, C-terminal domain Family:Putative glucosidase YicI, C-terminal domain 85 d1tiea_ not modelled 5.3 29 Fold:beta-Trefoil Superfamily:STI-like Family:Kunitz (STI) inhibitors 86 d1eyla_ not modelled 5.3 43 Fold:beta-Trefoil Superfamily:STI-like Family:Kunitz (STI) inhibitors 87 c3g12A_ not modelled 5.2 38 PDB header:lyase Chain: A: PDB Molecule:putative lactoylglutathione lyase; PDBTitle: crystal structure of a putative lactoylglutathione lyase2 from bdellovibrio bacteriovorus 88 d3bx1c1 not modelled 5.1 29 Fold:beta-Trefoil Superfamily:STI-like Family:Kunitz (STI) inhibitors 89 c1y7jA_ not modelled 5.1 80 PDB header:signaling protein Chain: A: PDB Molecule:agouti signaling protein; PDBTitle: nmr structure family of human agouti signalling protein (80-2 132: q115y, s124y) 90 c2owaB_ not modelled 5.1 27 PDB header:protein transport Chain: B: PDB Molecule:arfgap-like finger domain containing protein; PDBTitle: crystal structure of putative gtpase activating protein for2 adp ribosylation factor from cryptosporidium parvum3 (cgd5_1040) 91 c2dreA_ not modelled 5.1 36 PDB header:plant protein Chain: A: PDB Molecule:water-soluble chlorophyll protein; PDBTitle: crystal structure of water-soluble chlorophyll protein from2 lepidium virginicum at 2.00 angstrom resolution

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0