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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c2p3yA_

Fold library idPDB HeaderMoleculeTitle
c2p3yA_PDB header: structural genomics, unknown functionChain: A: PDB Molecule: hypothetical protein vpa0735;PDBTitle: crystal structure of vpa0735 from vibrio parahaemolyticus.2 northeast structural genomics target vpr109


Added to library: Tue Mar 16 14:22:40 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QETVVPSRVGDLKFESDFPTQETXKNXLNEXDFQRATQAYLWGIPASSIXEWLNVSRNDFKFEEGQXGFF
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Known secondary structure (DSSP)


TT

TT
TTT


TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence NTLKQKQGIITANFTTPYVIGTWNLEKTGPLIINLPEAKXAGXXLDVHQRVLSDLSLLGPDKGKGGKYLI
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Known secondary structure (DSSP)
STTSTT

SSS

S
S

TT

TTSTTTTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence VPPGEKYKDLNPKGYYVIRPKTNVVYGGIRILEPDVDRVVKQVVPNITTQPYADGKLGRKIPVAQVPEID
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Known secondary structure (DSSP)

SSGGGTT


TTS

SSS

S
TTGGG

TTTT






S

 .........220.........230.........240.........250.........260.........270.........280
Sequence WTHIPKDGLEYWKTIHQIIQENPVEERDRFVXAQLKFLGIEKGKPFNPTEEQKKILLEASKVGRAXAQSN
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Known secondary structure (DSSP)


S


S


GGGGGGT

TTS




 .........290.........300.........310.........320.........330.........340.........350
Sequence DYTKRFTQPYWKGTNWKDAISVSLDQRSENYDELDERAAWFYEAITVSRGXKSTIPGFGQRYLVTYQDSD
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Known secondary structure (DSSP)
TTS

SSTTSS
S

S
TT
B
SSSB





GGGG

STTSS
BBTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence GNWLSGEHTYKLHVPANVPASNFWSTTVYDENNRLXIINDAGSPDISSRKNLKVNSDGSIDVYYGPKPVK
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Known secondary structure (DSSP) S
B
BTTS

SS
STTT
SB


SS


TTS


B
TTS
SSS

T
 .........430.........440.........450.........460.
Sequence GYENNWVQTNPGEGWFTYFRFYGPTEKXFDKSWTXGDIELV
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Known secondary structure (DSSP) T
TTSB



TT
B
T

S



B


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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