Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP77690
DateThu Jan 5 12:31:41 GMT 2012
Unique Job IDe2da7f9ddcfdf764

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1mdoa_
Top template information
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
Confidence and coverage
Confidence:100.0% Coverage: 96%
365 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSEFLPFSRPAMGVEELAAVKEVLESGWITTGPKNQALEQAFCQLTGNQHAIAVSSATAG
Secondary structure 
SS confidence 
Disorder  ??????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  MHITLMALKIGKGDEVITPSLTWVSTLNMISLLGATPVMVDVDRDTLMVTPEAIESAITP
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  RTKAIIPVHYAGAPADIDAIRAIGERYGIAVIEDAAHAVGTYYKGRHIGAKGTAIFSFHA
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  IKNITCAEGGLIVTDNENLARQLRMLKFHGLGVDAYDRQTWGRAPQAEVLTPGYKYNLTD
Secondary structure 
SS confidence 
Disorder 
??????????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  INAAIALTQLVKLEHLNTRRREIAQQYQQALAALPFQPLSLPAWPHVHAWHLFIIRVDEQ
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  RCGISRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPD
Secondary structure 
SS confidence 
Disorder  ??
?
Disorder confidence 
 
   .........370.........
Sequence  MTTADADHVITALQQLAGQ
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1mdo chain A

3D model

Region: 3 - 378
Aligned: 365
Modelled: 376
Confidence: 100.0%
Identity: 79%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 3bcx chain A

3D model

Region: 1 - 378
Aligned: 378
Modelled: 378
Confidence: 100.0%
Identity: 27%
PDB header:transferase
Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3-
PDBTitle: e1 dehydrase

Phyre2

PDB 2r0t chain A

3D model

Region: 5 - 374
Aligned: 367
Modelled: 370
Confidence: 100.0%
Identity: 24%
PDB header:transferase
Chain: A: PDB Molecule:pyridoxamine 5-phosphate-dependent dehydrase;
PDBTitle: crystal sructure of gdp-4-keto-6-deoxymannose-3-dehydratase2 with a trapped plp-glutamate geminal diamine

Phyre2

PDB 2fnu chain A domain 1

3D model

Region: 3 - 378
Aligned: 366
Modelled: 376
Confidence: 100.0%
Identity: 28%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 2c7t chain A

3D model

Region: 10 - 379
Aligned: 370
Modelled: 370
Confidence: 100.0%
Identity: 28%
PDB header:transferase
Chain: A: PDB Molecule:glutamine-2-deoxy-scyllo-inosose
PDBTitle: crystal structure of the plp-bound form of btrr,2 a dual functional aminotransferase involved in butirosin3 biosynthesis.

Phyre2

PDB 2po3 chain B

3D model

Region: 1 - 379
Aligned: 365
Modelled: 367
Confidence: 100.0%
Identity: 32%
PDB header:transferase
Chain: B: PDB Molecule:4-dehydrase;
PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product

Phyre2

PDB 3dr4 chain B

3D model

Region: 5 - 377
Aligned: 362
Modelled: 373
Confidence: 100.0%
Identity: 34%
PDB header:transferase
Chain: B: PDB Molecule:putative perosamine synthetase;
PDBTitle: gdp-perosamine synthase k186a mutant from caulobacter2 crescentus with bound sugar ligand

Phyre2

PDB 1b9h chain A

3D model

Region: 10 - 379
Aligned: 363
Modelled: 370
Confidence: 100.0%
Identity: 28%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 2oge chain C

3D model

Region: 4 - 379
Aligned: 358
Modelled: 370
Confidence: 100.0%
Identity: 37%
PDB header:transferase
Chain: C: PDB Molecule:transaminase;
PDBTitle: x-ray structure of s. venezuelae desv in its internal2 aldimine form

Phyre2

PDB 3nys chain A

3D model

Region: 4 - 374
Aligned: 350
Modelled: 359
Confidence: 100.0%
Identity: 33%
PDB header:transferase
Chain: A: PDB Molecule:aminotransferase wbpe;
PDBTitle: x-ray structure of the k185a mutant of wbpe (wlbe) from pseudomonas2 aeruginosa in complex with plp at 1.45 angstrom resolution

Phyre2

PDB 3uwc chain A

3D model

Region: 5 - 379
Aligned: 357
Modelled: 363
Confidence: 100.0%
Identity: 29%
PDB header:transferase
Chain: A: PDB Molecule:nucleotide-sugar aminotransferase;
PDBTitle: structure of an aminotransferase (degt-dnrj-eryc1-strs family) from2 coxiella burnetii in complex with pmp

Phyre2

PDB 1o69 chain A

3D model

Region: 16 - 378
Aligned: 352
Modelled: 363
Confidence: 100.0%
Identity: 25%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 3frk chain B

3D model

Region: 10 - 376
Aligned: 348
Modelled: 367
Confidence: 100.0%
Identity: 31%
PDB header:transferase
Chain: B: PDB Molecule:qdtb;
PDBTitle: x-ray structure of qdtb from t. thermosaccharolyticum in2 complex with a plp:tdp-3-aminoquinovose aldimine

Phyre2

PDB 3ju7 chain B

3D model

Region: 3 - 375
Aligned: 358
Modelled: 365
Confidence: 100.0%
Identity: 22%
PDB header:transferase
Chain: B: PDB Molecule:putative plp-dependent aminotransferase;
PDBTitle: crystal structure of putative plp-dependent aminotransferase2 (np_978343.1) from bacillus cereus atcc 10987 at 2.19 a resolution

Phyre2

PDB 1qgn chain A

3D model

Region: 13 - 376
Aligned: 336
Modelled: 340
Confidence: 100.0%
Identity: 15%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 1jf9 chain A

3D model

Region: 8 - 378
Aligned: 348
Modelled: 356
Confidence: 100.0%
Identity: 14%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 2w8w chain A

3D model

Region: 2 - 379
Aligned: 330
Modelled: 339
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: n100y spt with plp-ser

Phyre2

PDB 3hqt chain B

3D model

Region: 2 - 379
Aligned: 322
Modelled: 331
Confidence: 100.0%
Identity: 12%
PDB header:transferase
Chain: B: PDB Molecule:cai-1 autoinducer synthase;
PDBTitle: plp-dependent acyl-coa transferase cqsa

Phyre2

PDB 1cl1 chain A

3D model

Region: 13 - 377
Aligned: 336
Modelled: 333
Confidence: 100.0%
Identity: 14%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 2gqn chain B

3D model

Region: 13 - 377
Aligned: 337
Modelled: 337
Confidence: 100.0%
Identity: 15%
PDB header:lyase
Chain: B: PDB Molecule:cystathionine beta-lyase;
PDBTitle: cystathionine beta-lyase (cbl) from escherichia coli in complex with2 n-hydrazinocarbonylmethyl-2-nitro-benzamide

Phyre2
1
d1mdoa_
2
c3bcxA_
3
c2r0tA_
4
d2fnua1
5
c2c7tA_
6
c2po3B_
7
c3dr4B_
8
d1b9ha_
9
c2ogeC_
10
c3nysA_
11
c3uwcA_
12
d1o69a_
13
c3frkB_
14
c3ju7B_
15
d1qgna_
16
d1jf9a_
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c2w8wA_
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c3hqtB_
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d1cl1a_
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c2gqnB_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1mdoa_
100.0 79 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
2c3bcxA_
100.0 27 PDB header:transferase
Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3-
PDBTitle: e1 dehydrase
3c2r0tA_
100.0 24 PDB header:transferase
Chain: A: PDB Molecule:pyridoxamine 5-phosphate-dependent dehydrase;
PDBTitle: crystal sructure of gdp-4-keto-6-deoxymannose-3-dehydratase2 with a trapped plp-glutamate geminal diamine
4d2fnua1
100.0 28 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
5c2c7tA_
100.0 28 PDB header:transferase
Chain: A: PDB Molecule:glutamine-2-deoxy-scyllo-inosose
PDBTitle: crystal structure of the plp-bound form of btrr,2 a dual functional aminotransferase involved in butirosin3 biosynthesis.
6c2po3B_
100.0 32 PDB header:transferase
Chain: B: PDB Molecule:4-dehydrase;
PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product
7c3dr4B_
100.0 34 PDB header:transferase
Chain: B: PDB Molecule:putative perosamine synthetase;
PDBTitle: gdp-perosamine synthase k186a mutant from caulobacter2 crescentus with bound sugar ligand
8d1b9ha_
100.0 28 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
9c2ogeC_
100.0 37 PDB header:transferase
Chain: C: PDB Molecule:transaminase;
PDBTitle: x-ray structure of s. venezuelae desv in its internal2 aldimine form
10c3nysA_
100.0 33 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase wbpe;
PDBTitle: x-ray structure of the k185a mutant of wbpe (wlbe) from pseudomonas2 aeruginosa in complex with plp at 1.45 angstrom resolution
11c3uwcA_
100.0 29 PDB header:transferase
Chain: A: PDB Molecule:nucleotide-sugar aminotransferase;
PDBTitle: structure of an aminotransferase (degt-dnrj-eryc1-strs family) from2 coxiella burnetii in complex with pmp
12d1o69a_
100.0 25 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
13c3frkB_
100.0 31 PDB header:transferase
Chain: B: PDB Molecule:qdtb;
PDBTitle: x-ray structure of qdtb from t. thermosaccharolyticum in2 complex with a plp:tdp-3-aminoquinovose aldimine
14c3ju7B_
100.0 22 PDB header:transferase
Chain: B: PDB Molecule:putative plp-dependent aminotransferase;
PDBTitle: crystal structure of putative plp-dependent aminotransferase2 (np_978343.1) from bacillus cereus atcc 10987 at 2.19 a resolution
15d1qgna_
100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
16d1jf9a_
100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
17c2w8wA_
100.0 17 PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: n100y spt with plp-ser
18c3hqtB_
100.0 12 PDB header:transferase
Chain: B: PDB Molecule:cai-1 autoinducer synthase;
PDBTitle: plp-dependent acyl-coa transferase cqsa
19d1cl1a_
100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
20c2gqnB_
100.0 15 PDB header:lyase
Chain: B: PDB Molecule:cystathionine beta-lyase;
PDBTitle: cystathionine beta-lyase (cbl) from escherichia coli in complex with2 n-hydrazinocarbonylmethyl-2-nitro-benzamide
21c3aemD_
not modelled 100.0 15 PDB header:lyase
Chain: D: PDB Molecule:methionine gamma-lyase;
PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate
22c3ffrA_
not modelled 100.0 10 PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase serc;
PDBTitle: crystal structure of a phosphoserine aminotransferase serc (chu_0995)2 from cytophaga hutchinsonii atcc 33406 at 1.75 a resolution
23d2ctza1
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
24d1gc0a_
not modelled 100.0 19 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
25c1i41J_
not modelled 100.0 15 PDB header:lyase
Chain: J: PDB Molecule:cystathionine gamma-synthase;
PDBTitle: cystathionine gamma-synthase in complex with the inhibitor2 appa
26c3caiA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:possible aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein
27c3a2bA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine
28d1cs1a_
not modelled 100.0 11 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
29d1t3ia_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
30c2cb1A_
not modelled 100.0 14 PDB header:lyase
Chain: A: PDB Molecule:o-acetyl homoserine sulfhydrylase;
PDBTitle: crystal structure of o-actetyl homoserine sulfhydrylase2 from thermus thermophilus hb8,oah2.
31d1c4ka2
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Ornithine decarboxylase major domain
32c3ndnC_
not modelled 100.0 18 PDB header:lyase
Chain: C: PDB Molecule:o-succinylhomoserine sulfhydrylase;
PDBTitle: crystal structure of o-succinylhomoserine sulfhydrylase from2 mycobacterium tuberculosis covalently bound to pyridoxal-5-phosphate
33d1m6sa_
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
34d1qz9a_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
35c3tqxA_
not modelled 100.0 19 PDB header:transferase
Chain: A: PDB Molecule:2-amino-3-ketobutyrate coenzyme a ligase;
PDBTitle: structure of the 2-amino-3-ketobutyrate coenzyme a ligase (kbl) from2 coxiella burnetii
36d1y4ia1
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
37c3l8aB_
not modelled 100.0 18 PDB header:lyase
Chain: B: PDB Molecule:putative aminotransferase, probable beta-cystathionase;
PDBTitle: crystal structure of metc from streptococcus mutans
38c1ibjC_
not modelled 100.0 17 PDB header:lyase
Chain: C: PDB Molecule:cystathionine beta-lyase;
PDBTitle: crystal structure of cystathionine beta-lyase from arabidopsis2 thaliana
39d1ibja_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
40c2nmpC_
not modelled 100.0 17 PDB header:lyase
Chain: C: PDB Molecule:cystathionine gamma-lyase;
PDBTitle: crystal structure of human cystathionine gamma lyase
41c3qi6B_
not modelled 100.0 19 PDB header:lyase
Chain: B: PDB Molecule:cystathionine gamma-synthase metb (cgs);
PDBTitle: crystal structure of cystathionine gamma-synthase metb (cgs) from2 mycobacterium ulcerans agy99
42d1bs0a_
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
43c3e9kA_
not modelled 100.0 14 PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase-3-hydroxyhippuric acid2 inhibitor complex
44d1kl1a_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
45c2dkjB_
not modelled 100.0 18 PDB header:transferase
Chain: B: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase
46d1n8pa_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
47d1e5ea_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
48c3ri6A_
not modelled 100.0 17 PDB header:transferase
Chain: A: PDB Molecule:o-acetylhomoserine sulfhydrylase;
PDBTitle: a novel mechanism of sulfur transfer catalyzed by o-acetylhomoserine2 sulfhydrylase in methionine biosynthetic pathway of wolinella3 succinogenes
49c2fyfB_
not modelled 100.0 14 PDB header:transferase
Chain: B: PDB Molecule:phosphoserine aminotransferase;
PDBTitle: structure of a putative phosphoserine aminotransferase from2 mycobacterium tuberculosis
50c2hzpA_
not modelled 100.0 14 PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase
51c3hbxB_
not modelled 100.0 11 PDB header:lyase
Chain: B: PDB Molecule:glutamate decarboxylase 1;
PDBTitle: crystal structure of gad1 from arabidopsis thaliana
52d2bwna1
not modelled 100.0 18 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
53c3ftbA_
not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: the crystal structure of the histidinol-phosphate2 aminotransferase from clostridium acetobutylicum
54d1vjoa_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
55d1fc4a_
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
56c3kaxB_
not modelled 100.0 12 PDB header:lyase
Chain: B: PDB Molecule:aminotransferase, classes i and ii;
PDBTitle: crystal structure of a putative c-s lyase from bacillus anthracis
57d1tpla_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
58c3e6gA_
not modelled 100.0 19 PDB header:lyase
Chain: A: PDB Molecule:cystathionine gamma-lyase-like protein;
PDBTitle: crystal structure of xometc, a cystathionine c-lyase-like2 protein from xanthomonas oryzae pv.oryzae
59c3ecdC_
not modelled 100.0 19 PDB header:transferase
Chain: C: PDB Molecule:serine hydroxymethyltransferase 2;
PDBTitle: crystal structure of serine hydroxymethyltransferase from burkholderia2 pseudomallei
60c3fdbA_
not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:putative plp-dependent beta-cystathionase;
PDBTitle: crystal structure of a putative plp-dependent beta-cystathionase2 (aecd, dip1736) from corynebacterium diphtheriae at 1.99 a resolution
61d1dfoa_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
62c3n0lA_
not modelled 100.0 18 PDB header:transferase
Chain: A: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of serine hydroxymethyltransferase from2 campylobacter jejuni
63c3nnkC_
not modelled 100.0 13 PDB header:transferase
Chain: C: PDB Molecule:ureidoglycine-glyoxylate aminotransferase;
PDBTitle: biochemical and structural characterization of a ureidoglycine2 aminotransferase in the klebsiella pneumoniae uric acid catabolic3 pathway
64c3hdoB_
not modelled 100.0 14 PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of a histidinol-phosphate aminotransferase from2 geobacter metallireducens
65c3h14A_
not modelled 100.0 16 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, classes i and ii;
PDBTitle: crystal structure of a putative aminotransferase from silicibacter2 pomeroyi
66d1c7ga_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
67c2hdyA_
not modelled 100.0 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:selenocysteine lyase;
PDBTitle: structure of human selenocysteine lyase
68c2dr1A_
not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:386aa long hypothetical serine aminotransferase;
PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3
69c3dzzB_
not modelled 100.0 14 PDB header:transferase
Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase;
PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution
70d1c7na_
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
71d2e7ja1
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:SepSecS-like
72d2r5ea1
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
73d1x0ma1
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
74c3f9tB_
not modelled 100.0 16 PDB header:lyase
Chain: B: PDB Molecule:l-tyrosine decarboxylase mfna;
PDBTitle: crystal structure of l-tyrosine decarboxylase mfna (ec 4.1.1.25)2 (np_247014.1) from methanococcus jannaschii at 2.11 a resolution
75c3getA_
not modelled 100.0 12 PDB header:transferase
Chain: A: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (np_281508.1) from campylobacter jejuni at 2.01 a resolution
76c3f0hA_
not modelled 100.0 11 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase (rer070207000802) from2 eubacterium rectale at 1.70 a resolution
77d1lc5a_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
78c3islA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:purine catabolism protein pucg;
PDBTitle: crystal structure of ureidoglycine-glyoxylate aminotransferase (pucg)2 from bacillus subtilis
79c3jtxB_
not modelled 100.0 12 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase (np_283882.1) from neisseria2 meningitidis z2491 at 1.91 a resolution
80d1h0ca_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
81c3cbfA_
not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:alpha-aminodipate aminotransferase;
PDBTitle: crystal structure of lysn, alpha-aminoadipate2 aminotransferase, from thermus thermophilus hb27
82d2c0ra1
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
83d1m32a_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
84c3mafB_
not modelled 100.0 17 PDB header:lyase
Chain: B: PDB Molecule:sphingosine-1-phosphate lyase;
PDBTitle: crystal structure of stspl (asymmetric form)
85c3ly1C_
not modelled 100.0 12 PDB header:transferase
Chain: C: PDB Molecule:putative histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (yp_050345.1) from erwinia carotovora atroseptica scri1043 at 1.80 a3 resolution
86d1vp4a_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
87c2okkA_
not modelled 100.0 14 PDB header:lyase
Chain: A: PDB Molecule:glutamate decarboxylase 2;
PDBTitle: the x-ray crystal structure of the 65kda isoform of glutamic acid2 decarboxylase (gad65)
88d1pmma_
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Pyridoxal-dependent decarboxylase
89c3eucB_
not modelled 100.0 14 PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase 2;
PDBTitle: crystal structure of histidinol-phosphate aminotransferase2 (yp_297314.1) from ralstonia eutropha jmp134 at 2.05 a resolution
90d1xi9a_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
91d1bw0a_
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
92d1j32a_
not modelled 100.0 18 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
93c3h7fB_
not modelled 100.0 17 PDB header:transferase
Chain: B: PDB Molecule:serine hydroxymethyltransferase 1;
PDBTitle: crystal structure of serine hydroxymethyltransferase from2 mycobacterium tuberculosis
94c3cq6E_
not modelled 100.0 13 PDB header:transferase
Chain: E: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: histidinol-phosphate aminotransferase from corynebacterium2 glutamicum holo-form (plp covalently bound )
95d1p3wa_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
96c2z9wA_
not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of pyridoxamine-pyruvate aminotransferase complexed2 with pyridoxal
97d1iuga_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
98c2jisA_
not modelled 99.9 16 PDB header:lyase
Chain: A: PDB Molecule:cysteine sulfinic acid decarboxylase;
PDBTitle: human cysteine sulfinic acid decarboxylase (csad) in2 complex with plp.
99d1js3a_
not modelled 99.9 11 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Pyridoxal-dependent decarboxylase
100d1wsta1
not modelled 99.9 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
101d1wyua1
not modelled 99.9 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Glycine dehydrogenase subunits (GDC-P)
102c3b46B_
not modelled 99.9 14 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase bna3;
PDBTitle: crystal structure of bna3p, a putative kynurenine2 aminotransferase from saccharomyces cerevisiae
103c2o0rA_
not modelled 99.9 18 PDB header:transferase
Chain: A: PDB Molecule:rv0858c (n-succinyldiaminopimelate aminotransferase);
PDBTitle: the three-dimensional structure of n-succinyldiaminopimelate2 aminotransferase from mycobacterium tuberculosis
104c3lwsF_
not modelled 99.9 14 PDB header:lyase
Chain: F: PDB Molecule:aromatic amino acid beta-eliminating
PDBTitle: crystal structure of putative aromatic amino acid beta-2 eliminating lyase/threonine aldolase. (yp_001813866.1) from3 exiguobacterium sp. 255-15 at 2.00 a resolution
105c3p1tB_
not modelled 99.9 11 PDB header:transferase
Chain: B: PDB Molecule:putative histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of a putative aminotransferase (bpsl1724) from2 burkholderia pseudomallei k96243 at 2.60 a resolution
106c3g0tA_
not modelled 99.9 11 PDB header:transferase
Chain: A: PDB Molecule:putative aminotransferase;
PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution
107d1w7la_
not modelled 99.9 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
108c2huuA_
not modelled 99.9 12 PDB header:transferase
Chain: A: PDB Molecule:alanine glyoxylate aminotransferase;
PDBTitle: crystal structure of aedes aegypti alanine glyoxylate2 aminotransferase in complex with alanine
109d1b5pa_
not modelled 99.9 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
110d1elua_
not modelled 99.9 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
111c3pj0D_
not modelled 99.9 14 PDB header:lyase
Chain: D: PDB Molecule:lmo0305 protein;
PDBTitle: crystal structure of a putative l-allo-threonine aldolase (lmo0305)2 from listeria monocytogenes egd-e at 1.80 a resolution
112c3e77A_
not modelled 99.9 10 PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase;
PDBTitle: human phosphoserine aminotransferase in complex with plp
113c3lvmB_
not modelled 99.9 14 PDB header:transferase
Chain: B: PDB Molecule:cysteine desulfurase;
PDBTitle: crystal structure of e.coli iscs
114d1v72a1
not modelled 99.9 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
115d2ch1a1
not modelled 99.9 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
116c1d2fB_
not modelled 99.9 15 PDB header:transferase
Chain: B: PDB Molecule:maly protein;
PDBTitle: x-ray structure of maly from escherichia coli: a pyridoxal-5'-2 phosphate-dependent enzyme acting as a modulator in mal gene3 expression
117d1d2fa_
not modelled 99.9 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
118c3fkdC_
not modelled 99.9 11 PDB header:lyase
Chain: C: PDB Molecule:l-threonine-o-3-phosphate decarboxylase;
PDBTitle: the crystal structure of l-threonine-o-3-phosphate2 decarboxylase from porphyromonas gingivalis
119c3op7A_
not modelled 99.9 15 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase class i and ii;
PDBTitle: crystal structure of a plp-dependent aminotransferase (zp_03625122.1)2 from streptococcus suis 89-1591 at 1.70 a resolution
120d1pffa_
not modelled 99.9 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0