Email l.a.kelley@imperial.ac.uk Description P15032 Date Thu Jan 5 11:34:17 GMT 2012 Unique Job ID dfc42f2183d2aba1

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3h4rA_ 100.0 100 PDB header:hydrolase Chain: A: PDB Molecule:exodeoxyribonuclease 8; PDBTitle: crystal structure of e. coli rece exonuclease 2 c3l0aA_ 100.0 19 PDB header:hydrolase Chain: A: PDB Molecule:putative exonuclease; PDBTitle: crystal structure of putative exonuclease (rer070207002219) from2 eubacterium rectale at 2.19 a resolution 3 c1w36E_ 97.6 21 PDB header:recombination Chain: E: PDB Molecule:exodeoxyribonuclease v beta chain; PDBTitle: recbcd:dna complex 4 d1w36b3 96.7 19 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Exodeoxyribonuclease V beta chain (RecB), C-terminal domain 5 d1rhoa_ 54.1 50 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:RhoGDI-like 6 d2fhzb1 48.6 56 Fold:Colicin D/E5 nuclease domain Superfamily:Colicin D/E5 nuclease domain Family:Colicin E5 nuclease domain 7 c2nuhA_ 37.6 18 PDB header:unknown function Chain: A: PDB Molecule:periplasmic divalent cation tolerance protein; PDBTitle: crystal structure of cuta from the phytopathgen bacterium xylella2 fastidiosa 8 c2v43A_ 36.2 36 PDB header:regulator Chain: A: PDB Molecule:sigma-e factor regulatory protein rseb; PDBTitle: crystal structure of rseb: a sensor for periplasmic stress2 response in e. coli 9 d1nzaa_ 34.3 18 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 10 d1naqa_ 33.2 26 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 11 c2zomC_ 32.2 18 PDB header:unknown function Chain: C: PDB Molecule:protein cuta, chloroplast, putative, expressed; PDBTitle: crystal structure of cuta1 from oryza sativa 12 c3ahpA_ 31.1 14 PDB header:electron transport Chain: A: PDB Molecule:cuta1; PDBTitle: crystal structure of stable protein, cuta1, from a psychrotrophic2 bacterium shewanella sp. sib1 13 d1k8ta_ 30.7 16 Fold:Adenylylcyclase toxin (the edema factor) Superfamily:Adenylylcyclase toxin (the edema factor) Family:Adenylylcyclase toxin (the edema factor) 14 c3bb5B_ 30.2 20 PDB header:unknown function Chain: B: PDB Molecule:stress responsive alpha-beta protein; PDBTitle: crystal structure of a dimeric ferredoxin-like protein of unknown2 function (jann_3925) from jannaschia sp. ccs1 at 2.30 a resolution 15 d2zfha1 29.5 16 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 16 c1xk8A_ 29.5 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:divalent cation tolerant protein cuta; PDBTitle: divalent cation tolerant protein cuta from homo sapiens2 o60888 17 c2zfhA_ 29.1 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cuta; PDBTitle: crystal structure of putative cuta1 from homo sapiens at 2.05a2 resolution 18 c3d0jA_ 28.5 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ca_c3497; PDBTitle: crystal structure of conserved protein of unknown function ca_c34972 from clostridium acetobutylicum atcc 824 19 c1fybA_ 27.2 60 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:proteinase inhibitor; PDBTitle: solution structure of c1-t1, a two-domain proteinase2 inhibitor derived from the circular precursor protein na-3 propi from nicotiana alata 20 d1p1la_ 25.2 19 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 21 d1vhfa_ not modelled 22.6 17 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 22 d1osce_ not modelled 21.9 15 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 23 d1ukua_ not modelled 20.5 17 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 24 d1kr4a_ not modelled 19.7 17 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 25 d3bgea1 not modelled 18.7 18 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:MgsA/YrvN C-terminal domain-like 26 d3ctda1 not modelled 18.2 21 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:MgsA/YrvN C-terminal domain-like 27 d1ajwa_ not modelled 18.2 40 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:RhoGDI-like 28 c3et6A_ not modelled 15.0 13 PDB header:lyase Chain: A: PDB Molecule:soluble guanylyl cyclase beta; PDBTitle: the crystal structure of the catalytic domain of a eukaryotic2 guanylate cyclase 29 d1gpja1 not modelled 15.0 14 Fold:Glutamyl tRNA-reductase dimerization domain Superfamily:Glutamyl tRNA-reductase dimerization domain Family:Glutamyl tRNA-reductase dimerization domain 30 c3nj2B_ not modelled 14.9 27 PDB header:unknown function Chain: B: PDB Molecule:duf269-containing protein; PDBTitle: crystal structure of cce_0566 from the cyanobacterium cyanothece2 51142, a protein associated with nitrogen fixation from the duf2693 family 31 c3iyuY_ not modelled 14.4 14 PDB header:virus Chain: Y: PDB Molecule:outer capsid protein vp4; PDBTitle: atomic model of an infectious rotavirus particle 32 c3g43F_ not modelled 13.6 30 PDB header:metal binding protein Chain: F: PDB Molecule:voltage-dependent l-type calcium channel subunit PDBTitle: crystal structure of the calmodulin-bound cav1.2 c-terminal2 regulatory domain dimer 33 c3kolA_ not modelled 13.2 44 PDB header:metal binding protein Chain: A: PDB Molecule:glyoxalase/bleomycin resistance PDBTitle: crystal structure of a glyoxalase/dioxygenase from nostoc2 punctiforme 34 d1pjua1 not modelled 12.9 50 Fold:Plant proteinase inhibitors Superfamily:Plant proteinase inhibitors Family:Plant proteinase inhibitors 35 c1h4tD_ not modelled 12.6 24 PDB header:aminoacyl-trna synthetase Chain: D: PDB Molecule:prolyl-trna synthetase; PDBTitle: prolyl-trna synthetase from thermus thermophilus complexed2 with l-proline 36 c1wq6A_ not modelled 12.5 29 PDB header:oncoprotein Chain: A: PDB Molecule:aml1-eto; PDBTitle: the tetramer structure of the nervy homolgy two (nhr2) domain of aml1-2 eto is critical for aml1-eto's activity 37 c2o61A_ not modelled 12.3 32 PDB header:transcription/dna Chain: A: PDB Molecule:transcription factor p65/interferon regulatory factor PDBTitle: crystal structure of nfkb, irf7, irf3 bound to the interferon-b2 enhancer 38 c2q2kA_ not modelled 12.0 9 PDB header:dna binding protein/dna Chain: A: PDB Molecule:hypothetical protein; PDBTitle: structure of nucleic-acid binding protein 39 d4sgbi_ not modelled 11.8 60 Fold:Plant proteinase inhibitors Superfamily:Plant proteinase inhibitors Family:Plant proteinase inhibitors 40 d1nr3a_ not modelled 11.3 5 Fold:DNA-binding protein Tfx Superfamily:DNA-binding protein Tfx Family:DNA-binding protein Tfx 41 c3mcrA_ not modelled 11.1 32 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh dehydrogenase, subunit c; PDBTitle: crystal structure of nadh dehydrogenase subunit c (tfu_2693) from2 thermobifida fusca yx-er1 at 2.65 a resolution 42 c2qycA_ not modelled 10.8 24 PDB header:unknown function Chain: A: PDB Molecule:ferredoxin-like protein; PDBTitle: crystal structure of a dimeric ferredoxin-like protein (bb1511) from2 bordetella bronchiseptica rb50 at 1.90 a resolution 43 d1oyvi_ not modelled 10.7 50 Fold:Plant proteinase inhibitors Superfamily:Plant proteinase inhibitors Family:Plant proteinase inhibitors 44 c2l1nA_ not modelled 10.7 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of the protein yp_399305.1 45 c3bn7A_ not modelled 10.7 16 PDB header:unknown function Chain: A: PDB Molecule:ferredoxin-like protein; PDBTitle: crystal structure of a dimeric ferredoxin-like protein (cc_2267) from2 caulobacter crescentus cb15 at 1.64 a resolution 46 d1k3ka_ not modelled 10.5 16 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 47 c2khrA_ not modelled 10.3 67 PDB header:biosynthetic protein Chain: A: PDB Molecule:protein mbth; PDBTitle: solution structure of rv2377c, a mbth-like protein from mycobacterium2 tuberculosis 48 c2xgfA_ not modelled 9.9 26 PDB header:viral protein Chain: A: PDB Molecule:long tail fiber protein p37; PDBTitle: structure of the bacteriophage t4 long tail fibre needle-2 shaped receptor-binding tip 49 c3nsjA_ not modelled 9.3 19 PDB header:immune system Chain: A: PDB Molecule:perforin-1; PDBTitle: the x-ray crystal structure of lymphocyte perforin 50 c1w36F_ not modelled 9.1 12 PDB header:recombination Chain: F: PDB Molecule:exodeoxyribonuclease v gamma chain; PDBTitle: recbcd:dna complex 51 d1azsb_ not modelled 8.8 14 Fold:Ferredoxin-like Superfamily:Nucleotide cyclase Family:Adenylyl and guanylyl cyclase catalytic domain 52 c2oevA_ not modelled 8.3 15 PDB header:protein transport Chain: A: PDB Molecule:programmed cell death 6-interacting protein; PDBTitle: crystal structure of alix/aip1 53 d1leha2 not modelled 8.3 20 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Aminoacid dehydrogenases 54 d2f23a1 not modelled 8.2 22 Fold:Long alpha-hairpin Superfamily:GreA transcript cleavage protein, N-terminal domain Family:GreA transcript cleavage protein, N-terminal domain 55 c2rmsB_ not modelled 8.2 32 PDB header:transcription Chain: B: PDB Molecule:msin3a-binding protein; PDBTitle: solution structure of the msin3a pah1-sap25 sid complex 56 c2bf9A_ not modelled 7.9 17 PDB header:hormone Chain: A: PDB Molecule:pancreatic hormone; PDBTitle: anisotropic refinement of avian (turkey) pancreatic2 polypeptide at 0.99 angstroms resolution. 57 d1fyba1 not modelled 7.7 60 Fold:Plant proteinase inhibitors Superfamily:Plant proteinase inhibitors Family:Plant proteinase inhibitors 58 d2ftxa1 not modelled 7.5 53 Fold:Kinetochore globular domain-like Superfamily:Kinetochore globular domain Family:Spc25-like 59 c2hr5B_ not modelled 7.3 20 PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form 60 c3ctdB_ not modelled 7.2 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative atpase, aaa family; PDBTitle: crystal structure of a putative aaa family atpase from2 prochlorococcus marinus subsp. pastoris 61 d1g7oa1 not modelled 7.1 21 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 62 c1tz5A_ not modelled 7.1 17 PDB header:hormone/growth factor Chain: A: PDB Molecule:chimera of pancreatic hormone and neuropeptide y; PDBTitle: [pnpy19-23]-hpp bound to dpc micelles 63 d1tzfa_ not modelled 7.0 14 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 64 c3u7vA_ not modelled 7.0 36 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: the structure of a putative beta-galactosidase from caulobacter2 crescentus cb15. 65 c2xnsC_ not modelled 6.8 71 PDB header:hydrolase/peptide Chain: C: PDB Molecule:regulator of g-protein signaling 14; PDBTitle: crystal structure of human g alpha i1 bound to a designed helical2 peptide derived from the goloco motif of rgs14 66 c1hk8A_ not modelled 6.6 44 PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp 67 d1hk8a_ not modelled 6.6 44 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit 68 d1xpma2 not modelled 6.5 14 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 69 d3erja1 not modelled 6.5 22 Fold:Peptidyl-tRNA hydrolase II Superfamily:Peptidyl-tRNA hydrolase II Family:Peptidyl-tRNA hydrolase II 70 c2hfvA_ not modelled 6.3 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa1041; PDBTitle: solution nmr structure of protein rpa1041 from pseudomonas2 aeruginosa. northeast structural genomics consortium3 target pat90. 71 c3f4yF_ not modelled 6.3 26 PDB header:viral protein Chain: F: PDB Molecule:mutant peptide derived from hiv gp41 chr domain; PDBTitle: hiv gp41 six-helix bundle containing a mutant chr alpha-2 peptide sequence 72 d1f06a2 not modelled 6.2 23 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Dihydrodipicolinate reductase-like 73 d1m8aa_ not modelled 6.1 45 Fold:IL8-like Superfamily:Interleukin 8-like chemokines Family:Interleukin 8-like chemokines 74 c2rbcA_ not modelled 6.1 8 PDB header:transferase Chain: A: PDB Molecule:sugar kinase; PDBTitle: crystal structure of a putative ribokinase from agrobacterium2 tumefaciens 75 d1tiha_ not modelled 6.1 60 Fold:Plant proteinase inhibitors Superfamily:Plant proteinase inhibitors Family:Plant proteinase inhibitors 76 c1xtyD_ not modelled 6.0 18 PDB header:hydrolase Chain: D: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of sulfolobus solfataricus peptidyl-trna2 hydrolase 77 d1q7sa_ not modelled 5.9 20 Fold:Peptidyl-tRNA hydrolase II Superfamily:Peptidyl-tRNA hydrolase II Family:Peptidyl-tRNA hydrolase II 78 d1dl6a_ not modelled 5.9 29 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 79 c3g7pA_ not modelled 5.9 21 PDB header:unknown function Chain: A: PDB Molecule:nitrogen fixation protein; PDBTitle: crystal structure of a nifx-associated protein of unknown function2 (afe_1514) from acidithiobacillus ferrooxidans atcc at 2.00 a3 resolution 80 c2wx6B_ not modelled 5.8 44 PDB header:oxidoreductase Chain: B: PDB Molecule:peroxidase ycdb; PDBTitle: x-ray crystallographic structure of e. coli apo-efeb 81 c2dezA_ not modelled 5.8 31 PDB header:neuropeptide Chain: A: PDB Molecule:peptide yy; PDBTitle: structure of human pyy 82 c3be3A_ not modelled 5.8 50 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein belonging to pfam duf16532 from bordetella bronchiseptica 83 c1ronA_ not modelled 5.7 13 PDB header:neuropeptide Chain: A: PDB Molecule:neuropeptide y; PDBTitle: nmr solution structure of human neuropeptide y 84 d2gvka1 not modelled 5.7 50 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Dyp-type peroxidase-like 85 d1rlka_ not modelled 5.6 12 Fold:Peptidyl-tRNA hydrolase II Superfamily:Peptidyl-tRNA hydrolase II Family:Peptidyl-tRNA hydrolase II 86 c2yy8B_ not modelled 5.6 29 PDB header:transferase Chain: B: PDB Molecule:upf0106 protein ph0461; PDBTitle: crystal structure of archaeal trna-methylase for position2 56 (atrm56) from pyrococcus horikoshii, complexed with s-3 adenosyl-l-methionine 87 d1q4ra_ not modelled 5.5 19 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Plant stress-induced protein 88 d2o3aa1 not modelled 5.5 29 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF0751-like 89 d2i2la1 not modelled 5.4 24 Fold:YopX-like Superfamily:YopX-like Family:YopX-like 90 d1nrja_ not modelled 5.4 41 Fold:Profilin-like Superfamily:SNARE-like Family:SRP alpha N-terminal domain-like 91 c3c18B_ not modelled 5.4 9 PDB header:transferase Chain: B: PDB Molecule:nucleotidyltransferase-like protein; PDBTitle: crystal structure of nucleotidyltransferase-like protein2 (zp_00538802.1) from exiguobacterium sibiricum 255-15 at 1.90 a3 resolution 92 c1jsuC_ not modelled 5.4 35 PDB header:complex (transferase/cyclin/inhibitor) Chain: C: PDB Molecule:p27; PDBTitle: p27(kip1)/cyclin a/cdk2 complex 93 c2om2B_ not modelled 5.4 86 PDB header:signaling protein Chain: B: PDB Molecule:regulator of g-protein signalling 14 goloco PDBTitle: crystal structure of human g[alpha]i1 bound to the goloco2 motif of rgs14 94 d1wz3a1 not modelled 5.4 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:APG12-like 95 d2o8sa1 not modelled 5.3 21 Fold:AGR C 984p-like Superfamily:AGR C 984p-like Family:AGR C 984p-like 96 c2rp4C_ not modelled 5.3 24 PDB header:transcription Chain: C: PDB Molecule:transcription factor p53; PDBTitle: solution structure of the oligomerization domain in dmp53 97 c2d3kA_ not modelled 5.3 24 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: structural study on project id ph1539 from pyrococcus2 horikoshii ot3 98 d1tr0a_ not modelled 5.3 19 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Plant stress-induced protein 99 c2l4nA_ not modelled 5.2 36 PDB header:cytokine Chain: A: PDB Molecule:c-c motif chemokine 21; PDBTitle: solution structure of the chemokine ccl21