Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	Y	S	V	M	F	A	L	L	L	L	T	P	L	L	F	S	L	L	C	F	A	C	R	K	R	R	L	S	A	T	R	T	V	T	V	L	H	S	L	G	I	T	L	L	L	I	L	A	L	W	V	V	Q	T	A	A	D	A
Secondary structure
SS confidence
Disorder		?	?	?	?																							?	?	?																									?	?	?		?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	E	I	F	A	A	G	L	W	L	H	I	D	G	L	G	G	L	F	L	A	I	L	G	V	I	G	F	L	T	G	I	Y	S	I	G	Y	M	R	H	E	V	A	H	G	E	L	S	P	V	T	L	C	D	Y	Y	G	F	F	H
Secondary structure
SS confidence
Disorder																																										?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	F	L	F	T	M	L	L	V	V	T	S	N	N	L	I	V	M	W	A	A	I	E	A	T	T	L	S	S	A	F	L	V	G	I	Y	G	Q	R	S	S	L	E	A	A	W	K	Y	I	I	I	C	T	V	G	V	A	F	G	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		F	G	T	V	L	V	Y	A	N	A	A	S	V	M	P	Q	A	E	M	A	I	F	W	S	E	V	L	K	Q	S	S	L	L	D	P	T	L	M	L	L	A	F	V	F	L	L	I	G	F	G	T	K	T	G	L	F	P	M	H	A
Secondary structure
SS confidence
Disorder																												?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		W	L	P	D	A	H	S	E	A	P	S	P	V	S	A	L	L	S	A	V	L	L	N	C	A	L	L	V	L	I	R	Y	Y	I	I	I	C	Q	A	I	G	S	D	F	P	N	R	L	L	L	I	F	G	M	L	S	V	A	V	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		A	F	F	I	L	V	Q	R	D	I	K	R	L	L	A	Y	S	S	V	E	N	M	G	L	V	A	V	E	L	G	I	G	G	P	L	G	I	F	A	A	L	L	H	I	L	N	H	S	L	A	K	T	L	L	F	C	G	S	G	N
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		V	L	L	K	Y	G	T	R	D	L	N	V	V	C	G	M	L	K	I	M	P	F	T	A	V	L	F	G	G	G	A	L	A	L	A	G	M	P	P	F	N	I	F	L	S	E	F	M	T	I	T	A	G	L	A	R	N	H	L	L
Secondary structure
SS confidence
Disorder														?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		I	I	V	L	L	L	L	L	L	T	L	V	L	A	G	L	V	R	M	A	A	R	V	L	M	A	K	P	P	Q	A	V	N	R	G	D	L	G	W	L	T	T	S	P	M	V	I	L	L	V	M	M	L	A	M	G	T	H	I	P
Secondary structure
SS confidence
Disorder																														?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.
Sequence		Q	P	V	I	R	I	L	A	G	A	S	T	I	V	L	S	G	T	H	D	L	P	A	Q	R	S	T	W	H	D	F	L	P	S	G	T	A	S	V	S	E	K	H	S	E	R
Secondary structure
SS confidence
Disorder															?		?				?																						?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3rko chain L Region: 6 - 483 Aligned: 458 Modelled: 475 Confidence: 100.0% Identity: 26% PDB header:oxidoreductase Chain: L: PDB Molecule:nadh-quinone oxidoreductase subunit l; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Phyre2 PDB 3rko chain M Region: 6 - 496 Aligned: 474 Modelled: 491 Confidence: 100.0% Identity: 21% PDB header:oxidoreductase Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit m; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Phyre2 PDB 3rko chain N Region: 1 - 494 Aligned: 465 Modelled: 494 Confidence: 100.0% Identity: 23% PDB header:oxidoreductase Chain: N: PDB Molecule:nadh-quinone oxidoreductase subunit n; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Phyre2 PDB 3rko chain K Region: 112 - 197 Aligned: 86 Modelled: 86 Confidence: 40.9% Identity: 17% PDB header:oxidoreductase Chain: K: PDB Molecule:nadh-quinone oxidoreductase subunit k; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Phyre2 PDB 2l3i chain A Region: 304 - 315 Aligned: 12 Modelled: 12 Confidence: 34.4% Identity: 58% PDB header:antimicrobial protein Chain: A: PDB Molecule:aoxki4a, antimicrobial peptide in spider venom; PDBTitle: oxki4a, spider derived antimicrobial peptide Phyre2 PDB 1o8b chain B domain 1 Region: 307 - 338 Aligned: 29 Modelled: 32 Confidence: 22.7% Identity: 21% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: D-ribose-5-phosphate isomerase (RpiA), catalytic domain Phyre2 PDB 2knc chain A Region: 419 - 456 Aligned: 38 Modelled: 38 Confidence: 20.6% Identity: 16% PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex Phyre2 PDB 1a6q chain A domain 1 Region: 382 - 416 Aligned: 35 Modelled: 35 Confidence: 20.2% Identity: 20% Fold: Another 3-helical bundle Superfamily: Protein serine/threonine phosphatase 2C, C-terminal domain Family: Protein serine/threonine phosphatase 2C, C-terminal domain Phyre2 PDB 1s1q chain A Region: 236 - 251 Aligned: 16 Modelled: 16 Confidence: 15.5% Identity: 31% Fold: UBC-like Superfamily: UBC-like Family: UEV domain Phyre2 PDB 2gf4 chain A domain 1 Region: 351 - 380 Aligned: 30 Modelled: 29 Confidence: 12.6% Identity: 10% Fold: immunoglobulin/albumin-binding domain-like Superfamily: Vng1086c-like Family: Vng1086c-like Phyre2 PDB 3u7j chain A Region: 305 - 339 Aligned: 35 Modelled: 35 Confidence: 12.4% Identity: 20% PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from burkholderia2 thailandensis Phyre2 PDB 3arc chain L Region: 98 - 127 Aligned: 30 Modelled: 30 Confidence: 12.3% Identity: 13% PDB header:electron transport, photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution Phyre2 PDB 3bz1 chain L Region: 98 - 127 Aligned: 30 Modelled: 30 Confidence: 11.8% Identity: 13% PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 12 of 2). this file contains first monomer of psii dimer Phyre2 PDB 2axt chain L domain 1 Region: 98 - 127 Aligned: 30 Modelled: 30 Confidence: 11.8% Identity: 13% Fold: Single transmembrane helix Superfamily: Photosystem II reaction center protein L, PsbL Family: PsbL-like Phyre2 PDB 3a0h chain L Region: 98 - 127 Aligned: 30 Modelled: 30 Confidence: 11.8% Identity: 13% PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of i-substituted photosystem ii complex Phyre2 PDB 3arc chain L Region: 98 - 127 Aligned: 30 Modelled: 30 Confidence: 11.8% Identity: 13% PDB header:electron transport, photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution Phyre2 PDB 2axt chain L Region: 98 - 127 Aligned: 30 Modelled: 30 Confidence: 11.8% Identity: 13% PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus Phyre2 PDB 2axt chain L Region: 98 - 127 Aligned: 30 Modelled: 30 Confidence: 11.8% Identity: 13% PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus Phyre2 PDB 1s5l chain L Region: 98 - 127 Aligned: 30 Modelled: 30 Confidence: 11.8% Identity: 13% PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center Phyre2 PDB 1s5l chain L Region: 98 - 127 Aligned: 30 Modelled: 30 Confidence: 11.8% Identity: 13% PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center Phyre2 1 c3rkoL_ 2 c3rkoM_ 3 c3rkoN_ 4 c3rkoK_ 5 c2l3iA_ 6 d1o8bb1 7 c2kncA_ 8 d1a6qa1 9 d1s1qa_ 10 d2gf4a1 11 c3u7jA_ 12 c3arcl_ 13 c3bz1L_ 14 d2axtl1 15 c3a0hL_ 16 c3arcL_ 17 c2axtl_ 18 c2axtL_ 19 c1s5ll_ 20 c1s5lL_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3rkoL_ 100.0 26 PDB header:oxidoreductase Chain: L: PDB Molecule:nadh-quinone oxidoreductase subunit l; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 2 c3rkoM_ 100.0 21 PDB header:oxidoreductase Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit m; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 3 c3rkoN_ 100.0 23 PDB header:oxidoreductase Chain: N: PDB Molecule:nadh-quinone oxidoreductase subunit n; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 4 c3rkoK_ 40.9 17 PDB header:oxidoreductase Chain: K: PDB Molecule:nadh-quinone oxidoreductase subunit k; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 5 c2l3iA_ 34.4 58 PDB header:antimicrobial protein Chain: A: PDB Molecule:aoxki4a, antimicrobial peptide in spider venom; PDBTitle: oxki4a, spider derived antimicrobial peptide 6 d1o8bb1 22.7 21 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 7 c2kncA_ 20.6 16 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 8 d1a6qa1 20.2 20 Fold:Another 3-helical bundle Superfamily:Protein serine/threonine phosphatase 2C, C-terminal domain Family:Protein serine/threonine phosphatase 2C, C-terminal domain 9 d1s1qa_ 15.5 31 Fold:UBC-like Superfamily:UBC-like Family:UEV domain 10 d2gf4a1 12.6 10 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Vng1086c-like Family:Vng1086c-like 11 c3u7jA_ 12.4 20 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from burkholderia2 thailandensis 12 c3arcl_ 12.3 13 PDB header:electron transport, photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution 13 c3bz1L_ 11.8 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 12 of 2). this file contains first monomer of psii dimer 14 d2axtl1 11.8 13 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein L, PsbL Family:PsbL-like 15 c3a0hL_ 11.8 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of i-substituted photosystem ii complex 16 c3arcL_ 11.8 13 PDB header:electron transport, photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution 17 c2axtl_ 11.8 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus 18 c2axtL_ 11.8 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus 19 c1s5ll_ 11.8 13 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 20 c1s5lL_ 11.8 13 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 21 c3prqL_ not modelled 11.8 13 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer 22 c3kziL_ not modelled 11.8 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii 23 c3prrL_ not modelled 11.8 13 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer 24 c3a0bl_ not modelled 11.8 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of br-substituted photosystem ii complex 25 c3bz2L_ not modelled 11.8 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 22 of 2). this file contains second monomer of psii dimer 26 c3a0bL_ not modelled 11.8 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of br-substituted photosystem ii complex 27 c3a0hl_ not modelled 11.8 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of i-substituted photosystem ii complex 28 d1xmec1 not modelled 11.4 15 Fold:Single transmembrane helix Superfamily:Bacterial ba3 type cytochrome c oxidase subunit IIa Family:Bacterial ba3 type cytochrome c oxidase subunit IIa 29 c3na2C_ not modelled 10.7 58 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function from mine drainage2 metagenome leptospirillum rubarum 30 c3c25A_ not modelled 10.6 67 PDB header:hydrolase/dna Chain: A: PDB Molecule:noti restriction endonuclease; PDBTitle: crystal structure of noti restriction endonuclease bound to cognate2 dna 31 d1n9wa2 not modelled 10.0 63 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 32 c1n9wA_ not modelled 9.9 63 PDB header:biosynthetic protein Chain: A: PDB Molecule:aspartyl-trna synthetase 2; PDBTitle: crystal structure of the non-discriminating and archaeal-2 type aspartyl-trna synthetase from thermus thermophilus 33 c3rkoF_ not modelled 9.8 13 PDB header:oxidoreductase Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 34 c3bjuB_ not modelled 9.3 38 PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of tetrameric form of human lysyl-trna2 synthetase 35 d1j4na_ not modelled 8.9 9 Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like 36 c1b8aB_ not modelled 8.6 63 PDB header:ligase Chain: B: PDB Molecule:protein (aspartyl-trna synthetase); PDBTitle: aspartyl-trna synthetase 37 d3d37a2 not modelled 8.3 57 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 38 d1bcce2 not modelled 8.3 5 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 39 c1wydB_ not modelled 8.3 63 PDB header:ligase Chain: B: PDB Molecule:hypothetical aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from sulfolobus tokodaii 40 c1x55A_ not modelled 8.1 38 PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase; PDBTitle: crystal structure of asparaginyl-trna synthetase from pyrococcus2 horikoshii complexed with asparaginyl-adenylate analogue 41 c2k1aA_ not modelled 8.1 16 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment 42 c1e22A_ not modelled 8.1 38 PDB header:ligase Chain: A: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase (lysu) hexagonal form complexed with2 lysine and the non-hydrolysable atp analogue amp-pcp 43 c2xgtB_ not modelled 8.0 25 PDB header:ligase Chain: B: PDB Molecule:asparaginyl-trna synthetase, cytoplasmic; PDBTitle: asparaginyl-trna synthetase from brugia malayi complexed2 with the sulphamoyl analogue of asparaginyl-adenylate 44 c3r24A_ not modelled 7.9 33 PDB header:transferase, viral protein Chain: A: PDB Molecule:2'-o-methyl transferase; PDBTitle: crystal structure of nsp10/nsp16 complex of sars coronavirus" if2 possible 45 c2ks1B_ not modelled 7.8 18 PDB header:transferase Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation 46 c3mesB_ not modelled 7.7 31 PDB header:transferase Chain: B: PDB Molecule:choline kinase; PDBTitle: crystal structure of choline kinase from cryptosporidium2 parvum iowa ii, cgd3_2030 47 c1asyA_ not modelled 7.6 38 PDB header:complex (aminoacyl-trna synthase/trna) Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: class ii aminoacyl transfer rna synthetases: crystal2 structure of yeast aspartyl-trna synthetase complexed with3 trna asp 48 c2kwtA_ not modelled 7.5 29 PDB header:viral protein Chain: A: PDB Molecule:protease ns2-3; PDBTitle: solution structure of ns2 [27-59] 49 c1ceuA_ not modelled 7.4 25 PDB header:viral protein Chain: A: PDB Molecule:protein (hiv-1 regulatory protein n-terminal PDBTitle: nmr structure of the (1-51) n-terminal domain of the hiv-12 regulatory protein 50 c2p04B_ not modelled 7.3 23 PDB header:transferase Chain: B: PDB Molecule:signal transduction histidine kinase; PDBTitle: 2.1 ang structure of the dimerized pas domain of signal transduction2 histidine kinase from nostoc punctiforme pcc 73102 with homology to3 the h-noxa/h-noba domain of the soluble guanylyl cyclase 51 d1unca_ not modelled 7.2 21 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 52 c2re3A_ not modelled 7.2 45 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf1285 family protein (spo_0140) from2 silicibacter pomeroyi dss-3 at 2.50 a resolution 53 d1yu8x1 not modelled 7.1 22 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 54 d1ppje2 not modelled 7.0 5 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 55 c3e9hB_ not modelled 7.0 50 PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase from bacillus stearothermophilus2 complexed with l-lysylsulfamoyl adenosine 56 c1efwA_ not modelled 7.0 38 PDB header:ligase/rna Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from thermus2 thermophilus complexed to trnaasp from escherichia coli 57 d1r6ra_ not modelled 7.0 19 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C 58 c1r6rA_ not modelled 7.0 19 PDB header:viral protein Chain: A: PDB Molecule:genome polyprotein; PDBTitle: solution structure of dengue virus capsid protein reveals a2 new fold 59 c3m4qA_ not modelled 6.9 25 PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase, putative; PDBTitle: entamoeba histolytica asparaginyl-trna synthetase (asnrs) 60 d1unda_ not modelled 6.9 22 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 61 c2ejbA_ not modelled 6.5 20 PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: crystal structure of phenylacrylic acid decarboxylase from2 aquifex aeolicus 62 c2voyK_ not modelled 6.5 23 PDB header:hydrolase Chain: K: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus 63 d2axti1 not modelled 6.4 13 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein I, PsbI Family:PsbI-like 64 d1jhda1 not modelled 6.2 11 Fold:PUA domain-like Superfamily:PUA domain-like Family:ATP sulfurylase N-terminal domain 65 d1oqwa_ not modelled 6.2 20 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 66 d2f05a1 not modelled 6.2 30 Fold:PAH2 domain Superfamily:PAH2 domain Family:PAH2 domain 67 d1ca1a2 not modelled 6.2 11 Fold:Lipase/lipooxygenase domain (PLAT/LH2 domain) Superfamily:Lipase/lipooxygenase domain (PLAT/LH2 domain) Family:Alpha-toxin, C-terminal domain 68 c3kv0A_ not modelled 6.2 57 PDB header:transport protein Chain: A: PDB Molecule:het-c2; PDBTitle: crystal structure of het-c2: a fungal glycolipid transfer protein2 (gltp) 69 d1swxa_ not modelled 6.1 30 Fold:Glycolipid transfer protein, GLTP Superfamily:Glycolipid transfer protein, GLTP Family:Glycolipid transfer protein, GLTP 70 d1l0wa3 not modelled 6.1 38 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 71 c3rpfC_ not modelled 5.9 33 PDB header:transferase Chain: C: PDB Molecule:molybdopterin converting factor, subunit 1 (moad); PDBTitle: protein-protein complex of subunit 1 and 2 of molybdopterin-converting2 factor from helicobacter pylori 26695 72 c2pjmA_ not modelled 5.9 25 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii 73 d1c0aa3 not modelled 5.9 38 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 74 c1eqrC_ not modelled 5.8 38 PDB header:ligase Chain: C: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of free aspartyl-trna synthetase from2 escherichia coli 75 c3jzdA_ not modelled 5.7 11 PDB header:oxidoreductase Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase; PDBTitle: crystal structure of putative alcohol dehedrogenase (yp_298327.1) from2 ralstonia eutropha jmp134 at 2.10 a resolution 76 d1qzpa_ not modelled 5.7 7 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 77 d1eova2 not modelled 5.7 38 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 78 c2jwaA_ not modelled 5.7 21 PDB header:transferase Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: erbb2 transmembrane segment dimer spatial structure 79 d1b8aa2 not modelled 5.7 63 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 80 d1x6va1 not modelled 5.7 33 Fold:PUA domain-like Superfamily:PUA domain-like Family:ATP sulfurylase N-terminal domain 81 d1zvpa1 not modelled 5.6 22 Fold:Ferredoxin-like Superfamily:ACT-like Family:VC0802-like 82 c3i7fA_ not modelled 5.6 25 PDB header:ligase Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: aspartyl trna synthetase from entamoeba histolytica 83 c3bwrC_ not modelled 5.6 38 PDB header:viral protein Chain: C: PDB Molecule:capsid protein vp1; PDBTitle: sv40 vp1 pentamer in complex with gm1 oligosaccharide 84 c2k6nA_ not modelled 5.6 22 PDB header:structural protein Chain: A: PDB Molecule:supervillin; PDBTitle: solution structure of human supervillin headpiece, minimized2 average 85 d1uzxa_ not modelled 5.6 27 Fold:UBC-like Superfamily:UBC-like Family:UEV domain 86 c2l3xA_ not modelled 5.6 14 PDB header:protein binding Chain: A: PDB Molecule:ablim2 protein; PDBTitle: villin head piece domain of human ablim2 87 c2i3fA_ not modelled 5.6 30 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:glycolipid transfer-like protein; PDBTitle: crystal structure of a glycolipid transfer-like protein2 from galdieria sulphuraria 88 d1yu5x1 not modelled 5.5 22 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 89 c2uwjG_ not modelled 5.5 42 PDB header:chaperone Chain: G: PDB Molecule:type iii export protein pscg; PDBTitle: structure of the heterotrimeric complex which regulates2 type iii secretion needle formation 90 c3pisA_ not modelled 5.4 38 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:kazal-type serine protease inhibitor spi-1; PDBTitle: crystal structure of carcinoscorpius rotundicauda serine protease2 inhibitor domain 1 91 d1sva1_ not modelled 5.4 38 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Group I dsDNA viruses Family:Papovaviridae-like VP 92 d1ujsa_ not modelled 5.4 11 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 93 c1v55B_ not modelled 5.3 11 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: bovine heart cytochrome c oxidase at the fully reduced state 94 d1sbza_ not modelled 5.3 30 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 95 c3mk7F_ not modelled 5.1 13 PDB header:oxidoreductase Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p; PDBTitle: the structure of cbb3 cytochrome oxidase 96 c3sokB_ not modelled 5.1 24 PDB header:cell adhesion Chain: B: PDB Molecule:fimbrial protein; PDBTitle: dichelobacter nodosus pilin fima 97 d2axte1 not modelled 5.1 26 Fold:Single transmembrane helix Superfamily:Cytochrome b559 subunits Family:Cytochrome b559 subunits 98 c1h2sB_ not modelled 5.0 27 PDB header:membrane protein Chain: B: PDB Molecule:sensory rhodopsin ii transducer; PDBTitle: molecular basis of transmenbrane signalling by sensory2 rhodopsin ii-transducer complex

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0