Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	L	Q	V	L	P	L	S	Q	E	A	F	S	A	Y	G	D	V	I	E	T	Q	Q	R	D	F	F	H	I	N	N	G	L	V	E	R	Y	H	D	L	A	L	V	E	I	L	E	Q	D	C	T	L	I	S	I	N	R	A	Q
Secondary structure
SS confidence
Disorder		?	?		?																					?																							?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	A	N	L	P	L	T	I	H	E	L	E	R	H	P	L	G	T	Q	A	F	I	P	M	K	G	E	V	F	V	V	V	V	A	L	G	D	D	K	P	D	L	S	T	L	R	A	F	I	T	N	G	E	Q	G	V	N	Y	H	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Sequence		N	V	W	H	H	P	L	F	A	W	Q	R	V	T	D	F	L	T	I	D	R	G	G	S	D	N	C	D	V	E	S	I	P	E	Q	E	L	C	F	A
Secondary structure
SS confidence
Disorder																																					?	?			?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2bdr chain A domain 1 Region: 2 - 159 Aligned: 158 Modelled: 152 Confidence: 100.0% Identity: 51% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Ureidoglycolate hydrolase AllA Phyre2 PDB 1xsq chain A Region: 1 - 160 Aligned: 154 Modelled: 159 Confidence: 100.0% Identity: 95% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Ureidoglycolate hydrolase AllA Phyre2 PDB 3d0j chain A Region: 50 - 156 Aligned: 104 Modelled: 107 Confidence: 98.2% Identity: 18% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ca_c3497; PDBTitle: crystal structure of conserved protein of unknown function ca_c34972 from clostridium acetobutylicum atcc 824 Phyre2 PDB 3mpb chain A Region: 64 - 126 Aligned: 63 Modelled: 63 Confidence: 90.9% Identity: 13% PDB header:isomerase Chain: A: PDB Molecule:sugar isomerase; PDBTitle: z5688 from e. coli o157:h7 bound to fructose Phyre2 PDB 2oa2 chain A Region: 24 - 139 Aligned: 107 Modelled: 116 Confidence: 89.7% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh2720 protein; PDBTitle: crystal structure of bh2720 (10175341) from bacillus halodurans at2 1.41 a resolution Phyre2 PDB 3kgz chain A Region: 47 - 139 Aligned: 77 Modelled: 93 Confidence: 88.6% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: crystal structure of a cupin 2 conserved barrel domain protein from2 rhodopseudomonas palustris Phyre2 PDB 3jzv chain A Region: 13 - 139 Aligned: 111 Modelled: 119 Confidence: 88.6% Identity: 15% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein rru_a2000; PDBTitle: crystal structure of rru_a2000 from rhodospirillum rubrum: a cupin-22 domain. Phyre2 PDB 1nxm chain A Region: 54 - 137 Aligned: 78 Modelled: 78 Confidence: 88.5% Identity: 12% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: dTDP-sugar isomerase Phyre2 PDB 2phl chain A domain 2 Region: 55 - 125 Aligned: 70 Modelled: 71 Confidence: 86.7% Identity: 13% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Germin/Seed storage 7S protein Phyre2 PDB 1zvf chain A domain 1 Region: 57 - 158 Aligned: 96 Modelled: 102 Confidence: 85.9% Identity: 17% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: 3-hydroxyanthranilic acid dioxygenase-like Phyre2 PDB 2pa7 chain A domain 1 Region: 53 - 125 Aligned: 64 Modelled: 73 Confidence: 85.2% Identity: 13% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: dTDP-sugar isomerase Phyre2 PDB 2i45 chain C Region: 73 - 140 Aligned: 56 Modelled: 68 Confidence: 85.2% Identity: 13% PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein nmb1881 from neisseria meningitidis Phyre2 PDB 1v70 chain A Region: 52 - 139 Aligned: 73 Modelled: 77 Confidence: 84.6% Identity: 15% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: TM1287-like Phyre2 PDB 3ejk chain A Region: 26 - 157 Aligned: 128 Modelled: 132 Confidence: 81.1% Identity: 15% PDB header:isomerase Chain: A: PDB Molecule:dtdp sugar isomerase; PDBTitle: crystal structure of dtdp sugar isomerase (yp_390184.1) from2 desulfovibrio desulfuricans g20 at 1.95 a resolution Phyre2 PDB 1o4t chain A Region: 31 - 139 Aligned: 93 Modelled: 105 Confidence: 78.8% Identity: 18% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: TM1287-like Phyre2 PDB 2ozi chain A Region: 48 - 140 Aligned: 81 Modelled: 93 Confidence: 76.6% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa4178; PDBTitle: structural genomics, the crystal structure of a putative2 protein rpa4178 from rhodopseudomonas palustris cga009 Phyre2 PDB 2y0o chain A Region: 64 - 157 Aligned: 89 Modelled: 94 Confidence: 73.1% Identity: 15% PDB header:isomerase Chain: A: PDB Molecule:probable d-lyxose ketol-isomerase; PDBTitle: the structure of a d-lyxose isomerase from the sigmab2 regulon of bacillus subtilis Phyre2 PDB 3cew chain A Region: 45 - 145 Aligned: 87 Modelled: 101 Confidence: 65.7% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized cupin protein; PDBTitle: crystal structure of a cupin protein (bf4112) from bacteroides2 fragilis. northeast structural genomics consortium target bfr205 Phyre2 PDB 2gu9 chain B Region: 73 - 155 Aligned: 72 Modelled: 83 Confidence: 64.6% Identity: 14% PDB header:immune system Chain: B: PDB Molecule:tetracenomycin polyketide synthesis protein; PDBTitle: crystal structure of xc5357 from xanthomonas campestris: a2 putative tetracenomycin polyketide synthesis protein3 adopting a novel cupin subfamily structure Phyre2 PDB 3d82 chain A Region: 73 - 124 Aligned: 41 Modelled: 52 Confidence: 63.8% Identity: 22% PDB header:metal binding protein Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a cupin-2 domain containing protein (sfri_3543)2 from shewanella frigidimarina ncimb 400 at 2.05 a resolution Phyre2 1 d2bdra1 2 d1xsqa_ 3 c3d0jA_ 4 c3mpbA_ 5 c2oa2A_ 6 c3kgzA_ 7 c3jzvA_ 8 d1nxma_ 9 d2phla2 10 d1zvfa1 11 d2pa7a1 12 c2i45C_ 13 d1v70a_ 14 c3ejkA_ 15 d1o4ta_ 16 c2oziA_ 17 c2y0oA_ 18 c3cewA_ 19 c2gu9B_ 20 c3d82A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2bdra1 100.0 51 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Ureidoglycolate hydrolase AllA 2 d1xsqa_ 100.0 95 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Ureidoglycolate hydrolase AllA 3 c3d0jA_ 98.2 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ca_c3497; PDBTitle: crystal structure of conserved protein of unknown function ca_c34972 from clostridium acetobutylicum atcc 824 4 c3mpbA_ 90.9 13 PDB header:isomerase Chain: A: PDB Molecule:sugar isomerase; PDBTitle: z5688 from e. coli o157:h7 bound to fructose 5 c2oa2A_ 89.7 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh2720 protein; PDBTitle: crystal structure of bh2720 (10175341) from bacillus halodurans at2 1.41 a resolution 6 c3kgzA_ 88.6 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: crystal structure of a cupin 2 conserved barrel domain protein from2 rhodopseudomonas palustris 7 c3jzvA_ 88.6 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein rru_a2000; PDBTitle: crystal structure of rru_a2000 from rhodospirillum rubrum: a cupin-22 domain. 8 d1nxma_ 88.5 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 9 d2phla2 86.7 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 10 d1zvfa1 85.9 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 11 d2pa7a1 85.2 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 12 c2i45C_ 85.2 13 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein nmb1881 from neisseria meningitidis 13 d1v70a_ 84.6 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 14 c3ejkA_ 81.1 15 PDB header:isomerase Chain: A: PDB Molecule:dtdp sugar isomerase; PDBTitle: crystal structure of dtdp sugar isomerase (yp_390184.1) from2 desulfovibrio desulfuricans g20 at 1.95 a resolution 15 d1o4ta_ 78.8 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 16 c2oziA_ 76.6 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa4178; PDBTitle: structural genomics, the crystal structure of a putative2 protein rpa4178 from rhodopseudomonas palustris cga009 17 c2y0oA_ 73.1 15 PDB header:isomerase Chain: A: PDB Molecule:probable d-lyxose ketol-isomerase; PDBTitle: the structure of a d-lyxose isomerase from the sigmab2 regulon of bacillus subtilis 18 c3cewA_ 65.7 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized cupin protein; PDBTitle: crystal structure of a cupin protein (bf4112) from bacteroides2 fragilis. northeast structural genomics consortium target bfr205 19 c2gu9B_ 64.6 14 PDB header:immune system Chain: B: PDB Molecule:tetracenomycin polyketide synthesis protein; PDBTitle: crystal structure of xc5357 from xanthomonas campestris: a2 putative tetracenomycin polyketide synthesis protein3 adopting a novel cupin subfamily structure 20 c3d82A_ 63.8 22 PDB header:metal binding protein Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a cupin-2 domain containing protein (sfri_3543)2 from shewanella frigidimarina ncimb 400 at 2.05 a resolution 21 c2fqpD_ not modelled 61.7 11 PDB header:metal binding protein Chain: D: PDB Molecule:hypothetical protein bp2299; PDBTitle: crystal structure of a cupin domain (bp2299) from bordetella pertussis2 tohama i at 1.80 a resolution 22 c2vqaC_ not modelled 61.0 12 PDB header:metal-binding protein Chain: C: PDB Molecule:sll1358 protein; PDBTitle: protein-folding location can regulate mn versus cu- or zn-2 binding. crystal structure of mnca. 23 d2et1a1 not modelled 60.4 22 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 24 c3h8uA_ not modelled 59.7 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein with double-stranded PDBTitle: crystal structure of uncharacterized conserved protein with double-2 stranded beta-helix domain (yp_001338853.1) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.80 a resolution 25 d1juha_ not modelled 59.6 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Quercetin 2,3-dioxygenase-like 26 d1ep0a_ not modelled 53.5 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 27 d1wlta1 not modelled 49.6 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 28 c2o8qA_ not modelled 45.7 18 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a protein with a cupin-like fold and unknown2 function (bxe_c0505) from burkholderia xenovorans lb400 at 1.55 a3 resolution 29 c1cauB_ not modelled 43.2 12 PDB header:seed storage protein Chain: B: PDB Molecule:canavalin; PDBTitle: determination of three crystal structures of canavalin by molecular2 replacement 30 d2ixha1 not modelled 39.6 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 31 d2f4pa1 not modelled 36.3 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 32 d1vj2a_ not modelled 35.9 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 33 d1j3pa_ not modelled 35.5 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 34 c3ibmB_ not modelled 35.3 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of cupin 2 domain-containing protein hhal_0468 from2 halorhodospira halophila 35 d2cupa1 not modelled 34.8 50 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 36 d1x82a_ not modelled 34.0 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 37 d1x63a1 not modelled 33.6 50 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 38 c2c0zA_ not modelled 30.4 17 PDB header:isomerase Chain: A: PDB Molecule:novw; PDBTitle: the 1.6 a resolution crystal structure of novw: a 4-keto-6-2 deoxy sugar epimerase from the novobiocin biosynthetic3 gene cluster of streptomyces spheroides 39 d1rc6a_ not modelled 29.0 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 40 c2cauA_ not modelled 28.0 11 PDB header:plant protein Chain: A: PDB Molecule:protein (canavalin); PDBTitle: canavalin from jack bean 41 d2fcta1 not modelled 26.3 15 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:PhyH-like 42 d1y3ta1 not modelled 25.4 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Quercetin 2,3-dioxygenase-like 43 c3l2hD_ not modelled 25.2 17 PDB header:isomerase Chain: D: PDB Molecule:putative sugar phosphate isomerase; PDBTitle: crystal structure of putative sugar phosphate isomerase (afe_0303)2 from acidithiobacillus ferrooxidans atcc 23270 at 1.85 a resolution 44 d2ixca1 not modelled 23.5 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 45 d1ukwa2 not modelled 21.5 21 Fold:Acyl-CoA dehydrogenase NM domain-like Superfamily:Acyl-CoA dehydrogenase NM domain-like Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains 46 c3chxE_ not modelled 20.7 16 PDB header:membrane protein Chain: E: PDB Molecule:pmob; PDBTitle: crystal structure of methylosinus trichosporium ob3b2 particulate methane monooxygenase (pmmo) 47 d1j58a_ not modelled 20.5 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 48 d1uija1 not modelled 20.1 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 49 c3rgbA_ not modelled 18.9 21 PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase subunit b2; PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath) 50 c3rfrI_ not modelled 17.9 16 PDB header:oxidoreductase Chain: I: PDB Molecule:pmob; PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m 51 d1oi6a_ not modelled 17.2 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 52 c3ht2A_ not modelled 16.4 13 PDB header:lyase Chain: A: PDB Molecule:remf protein; PDBTitle: zink containing polyketide cyclase remf from streptomyces2 resistomycificus 53 d1fxza2 not modelled 16.3 8 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 54 d1lr5a_ not modelled 15.9 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 55 d2c0za1 not modelled 15.6 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 56 c3rykB_ not modelled 14.5 19 PDB header:isomerase Chain: B: PDB Molecule:dtdp-4-dehydrorhamnose 3,5-epimerase; PDBTitle: 1.63 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose2 3,5-epimerase (rfbc) from bacillus anthracis str. ames with tdp and3 ppi bound 57 d1vyqa1 not modelled 14.2 38 Fold:beta-clip Superfamily:dUTPase-like Family:dUTPase-like 58 c1yewI_ not modelled 13.7 29 PDB header:oxidoreductase, membrane protein Chain: I: PDB Molecule:particulate methane monooxygenase, b subunit; PDBTitle: crystal structure of particulate methane monooxygenase 59 c3i7dB_ not modelled 12.8 8 PDB header:isomerase Chain: B: PDB Molecule:sugar phosphate isomerase; PDBTitle: crystal structure of sugar phosphate isomerase from a cupin2 superfamily spo2919 from silicibacter pomeroyi (yp_168127.1) from3 silicibacter pomeroyi dss-3 at 2.30 a resolution 60 c1sefA_ not modelled 12.6 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of cupin domain protein ef2996 from enterococcus2 faecalis 61 d1sefa_ not modelled 12.6 9 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 62 c3nnlB_ not modelled 12.6 13 PDB header:biosynthetic protein Chain: B: PDB Molecule:cura; PDBTitle: halogenase domain from cura module (crystal form iii) 63 c2xdvA_ not modelled 11.8 16 PDB header:nuclear protein Chain: A: PDB Molecule:myc-induced nuclear antigen; PDBTitle: crystal structure of the catalytic domain of flj14393 64 d2b8ma1 not modelled 11.8 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:MJ0764-like 65 d1to3a_ not modelled 11.5 22 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 66 c2xxzA_ not modelled 11.4 14 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 6b; PDBTitle: crystal structure of the human jmjd3 jumonji domain 67 d2jzaa1 not modelled 11.3 14 Fold:ISP domain Superfamily:ISP domain Family:NirD-like 68 d1dgwa_ not modelled 10.9 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 69 d1o7na1 not modelled 10.9 3 Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain 70 d1oiha_ not modelled 10.9 29 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:TauD/TfdA-like 71 d2jo6a1 not modelled 10.7 17 Fold:ISP domain Superfamily:ISP domain Family:NirD-like 72 c1upiA_ not modelled 10.6 13 PDB header:epimerase Chain: A: PDB Molecule:dtdp-4-dehydrorhamnose 3,5-epimerase; PDBTitle: mycobacterium tuberculosis rmlc epimerase (rv3465) 73 d2cupa2 not modelled 10.5 25 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 74 d1vrba1 not modelled 10.2 16 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Asparaginyl hydroxylase-like 75 d1dzra_ not modelled 9.6 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 76 c3fjsC_ not modelled 9.6 13 PDB header:biosynthetic protein Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold; PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution 77 d1x4da1 not modelled 9.2 9 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 78 c3h7yA_ not modelled 8.7 11 PDB header:biosynthetic protein Chain: A: PDB Molecule:bacilysin biosynthesis protein bacb; PDBTitle: crystal structure of bacb, an enzyme involved in bacilysin synthesis,2 in tetragonal form 79 c2vpvA_ not modelled 8.5 12 PDB header:cell cycle Chain: A: PDB Molecule:protein mif2; PDBTitle: dimerization domain of mif2p 80 c1za4A_ not modelled 8.0 19 PDB header:cell adhesion Chain: A: PDB Molecule:thrombospondin 1; PDBTitle: crystal structure of the thrombospondin-1 n-terminal domain2 in complex with arixtra 81 c3ic3C_ not modelled 8.0 35 PDB header:oxidoreductase Chain: C: PDB Molecule:putative pyruvate dehydrogenase; PDBTitle: structure of a putative pyruvate dehydrogenase from the photosynthetic2 bacterium rhodopseudomonas palustrus cga009 82 c2d40C_ not modelled 7.8 14 PDB header:oxidoreductase Chain: C: PDB Molecule:putative gentisate 1,2-dioxygenase; PDBTitle: crystal structure of z3393 from escherichia coli o157:h7 83 c2d9oA_ not modelled 7.7 25 PDB header:rna binding protein Chain: A: PDB Molecule:dnaj (hsp40) homolog, subfamily c, member 17; PDBTitle: solution structure of rna binding domain in hypothetical2 protein flj10634 84 c3es1A_ not modelled 7.7 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of protein with a cupin-like fold and unknown2 function (yp_001165807.1) from novosphingobium aromaticivorans dsm3 12444 at 1.91 a resolution 85 d1uika2 not modelled 7.7 9 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 86 d2erfa1 not modelled 7.1 19 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Laminin G-like module 87 d1yfua1 not modelled 7.0 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 88 c3ctrA_ not modelled 7.0 57 PDB header:hydrolase Chain: A: PDB Molecule:poly(a)-specific ribonuclease parn; PDBTitle: crystal structure of the rrm-domain of the poly(a)-specific2 ribonuclease parn bound to m7gtp 89 d2d8za1 not modelled 6.9 43 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 90 d1sq4a_ not modelled 6.9 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 91 c3rnsA_ not modelled 6.5 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: cupin 2 conserved barrel domain protein from leptotrichia buccalis 92 d1txka1 not modelled 6.4 24 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 93 c3bu7A_ not modelled 6.4 19 PDB header:oxidoreductase Chain: A: PDB Molecule:gentisate 1,2-dioxygenase; PDBTitle: crystal structure and biochemical characterization of gdosp,2 a gentisate 1,2-dioxygenase from silicibacter pomeroyi 94 d3bu7a1 not modelled 6.4 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 95 d2cura2 not modelled 6.0 36 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 96 d3ehwa1 not modelled 6.0 31 Fold:beta-clip Superfamily:dUTPase-like Family:dUTPase-like 97 c2pfwB_ not modelled 6.0 14 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a rmlc-like cupin (sfri_3105) from shewanella2 frigidimarina ncimb 400 at 1.90 a resolution 98 d1ei5a2 not modelled 5.9 13 Fold:Streptavidin-like Superfamily:D-aminopeptidase, middle and C-terminal domains Family:D-aminopeptidase, middle and C-terminal domains 99 d1zrra1 not modelled 5.7 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acireductone dioxygenase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0