Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	R	V	T	I	T	L	D	D	D	L	L	E	T	L	D	S	L	S	Q	R	R	G	Y	N	N	R	S	E	A	I	R	D	I	L	R	S	A	L	A	Q	E	A	T	Q	Q	H	G	T	Q	G	F	A	V	L	S	Y	V	Y
Secondary structure
SS confidence
Disorder		?	?																					?		?		?																	?			?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	H	E	K	R	D	L	A	S	R	I	V	S	T	Q	H	H	H	H	D	L	S	V	A	T	L	H	V	H	I	N	H	D	D	C	L	E	I	A	V	L	K	G	D	M	G	D	V	Q	H	F	A	D	D	V	I	A	Q	R	G
Secondary structure
SS confidence
Disorder							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.
Sequence		V	R	H	G	H	L	Q	C	L	P	K	E	D
Secondary structure
SS confidence
Disorder											?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2ca9 chain B Region: 1 - 133 Aligned: 133 Modelled: 133 Confidence: 100.0% Identity: 29% PDB header:transcriptional regulation Chain: B: PDB Molecule:putative nickel-responsive regulator; PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation Phyre2 PDB 2bj3 chain D Region: 1 - 130 Aligned: 128 Modelled: 130 Confidence: 100.0% Identity: 32% PDB header:transcription Chain: D: PDB Molecule:nickel responsive regulator; PDBTitle: nikr-apo Phyre2 PDB 1q5v chain B Region: 1 - 133 Aligned: 116 Modelled: 116 Confidence: 100.0% Identity: 100% PDB header:transcription Chain: B: PDB Molecule:nickel responsive regulator; PDBTitle: apo-nikr Phyre2 PDB 1q5y chain A Region: 50 - 133 Aligned: 84 Modelled: 84 Confidence: 100.0% Identity: 100% Fold: Ferredoxin-like Superfamily: ACT-like Family: Nickel responsive regulator NikR, C-terminal domain Phyre2 PDB 2bj7 chain A domain 2 Region: 49 - 130 Aligned: 82 Modelled: 82 Confidence: 100.0% Identity: 29% Fold: Ferredoxin-like Superfamily: ACT-like Family: Nickel responsive regulator NikR, C-terminal domain Phyre2 PDB 2y3y chain C Region: 49 - 127 Aligned: 79 Modelled: 79 Confidence: 100.0% Identity: 29% PDB header:transcription Chain: C: PDB Molecule:putative nickel-responsive regulator; PDBTitle: holo-ni(ii) hpnikr is a symmetric tetramer containing four2 canonic square-planar ni(ii) ions at physiological ph Phyre2 PDB 2bj7 chain A domain 1 Region: 1 - 48 Aligned: 48 Modelled: 48 Confidence: 99.6% Identity: 35% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: CopG-like Phyre2 PDB 2hza chain A domain 1 Region: 1 - 47 Aligned: 47 Modelled: 46 Confidence: 99.6% Identity: 98% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: CopG-like Phyre2 PDB 2hza chain B domain 1 Region: 1 - 43 Aligned: 43 Modelled: 42 Confidence: 99.5% Identity: 98% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: CopG-like Phyre2 PDB 2k5j chain B Region: 1 - 50 Aligned: 49 Modelled: 50 Confidence: 97.8% Identity: 20% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein yiif; PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1 Phyre2 PDB 3kxe chain D Region: 4 - 45 Aligned: 42 Modelled: 42 Confidence: 97.3% Identity: 31% PDB header:protein binding Chain: D: PDB Molecule:antitoxin protein pard-1; PDBTitle: a conserved mode of protein recognition and binding in a2 pard-pare toxin-antitoxin complex Phyre2 PDB 2nzc chain A domain 1 Region: 50 - 122 Aligned: 72 Modelled: 73 Confidence: 97.0% Identity: 17% Fold: Ferredoxin-like Superfamily: ACT-like Family: TM1266-like Phyre2 PDB 2cpg chain A Region: 2 - 40 Aligned: 38 Modelled: 39 Confidence: 93.2% Identity: 32% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: CopG-like Phyre2 PDB 2k29 chain A Region: 1 - 44 Aligned: 43 Modelled: 44 Confidence: 91.5% Identity: 26% PDB header:transcription Chain: A: PDB Molecule:antitoxin relb; PDBTitle: structure of the dbd domain of e. coli antitoxin relb Phyre2 PDB 2kel chain B Region: 4 - 45 Aligned: 41 Modelled: 42 Confidence: 90.2% Identity: 20% PDB header:transcription repressor Chain: B: PDB Molecule:uncharacterized protein 56b; PDBTitle: structure of the transcription regulator svtr from the2 hyperthermophilic archaeal virus sirv1 Phyre2 PDB 3h87 chain D Region: 8 - 33 Aligned: 25 Modelled: 26 Confidence: 77.8% Identity: 44% PDB header:toxin/antitoxin Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis Phyre2 PDB 1y9b chain A domain 1 Region: 3 - 39 Aligned: 37 Modelled: 37 Confidence: 64.2% Identity: 16% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: VCA0319-like Phyre2 PDB 2k9i chain B Region: 3 - 46 Aligned: 43 Modelled: 44 Confidence: 59.3% Identity: 12% PDB header:dna binding protein Chain: B: PDB Molecule:plasmid prn1, complete sequence; PDBTitle: nmr structure of plasmid copy control protein orf56 from2 sulfolobus islandicus Phyre2 PDB 3gxq chain B Region: 8 - 42 Aligned: 35 Modelled: 35 Confidence: 55.8% Identity: 31% PDB header:dna binding protein/dna Chain: B: PDB Molecule:putative regulator of transfer genes arta; PDBTitle: structure of arta and dna complex Phyre2 PDB 1p94 chain A Region: 2 - 44 Aligned: 42 Modelled: 43 Confidence: 55.1% Identity: 14% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: CopG-like Phyre2 1 c2ca9B_ 2 c2bj3D_ 3 c1q5vB_ 4 d1q5ya_ 5 d2bj7a2 6 c2y3yC_ 7 d2bj7a1 8 d2hzaa1 9 d2hzab1 10 c2k5jB_ 11 c3kxeD_ 12 d2nzca1 13 d2cpga_ 14 c2k29A_ 15 c2kelB_ 16 c3h87D_ 17 d1y9ba1 18 c2k9iB_ 19 c3gxqB_ 20 d1p94a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2ca9B_ 100.0 29 PDB header:transcriptional regulation Chain: B: PDB Molecule:putative nickel-responsive regulator; PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation 2 c2bj3D_ 100.0 32 PDB header:transcription Chain: D: PDB Molecule:nickel responsive regulator; PDBTitle: nikr-apo 3 c1q5vB_ 100.0 100 PDB header:transcription Chain: B: PDB Molecule:nickel responsive regulator; PDBTitle: apo-nikr 4 d1q5ya_ 100.0 100 Fold:Ferredoxin-like Superfamily:ACT-like Family:Nickel responsive regulator NikR, C-terminal domain 5 d2bj7a2 100.0 29 Fold:Ferredoxin-like Superfamily:ACT-like Family:Nickel responsive regulator NikR, C-terminal domain 6 c2y3yC_ 100.0 29 PDB header:transcription Chain: C: PDB Molecule:putative nickel-responsive regulator; PDBTitle: holo-ni(ii) hpnikr is a symmetric tetramer containing four2 canonic square-planar ni(ii) ions at physiological ph 7 d2bj7a1 99.6 35 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 8 d2hzaa1 99.6 98 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 9 d2hzab1 99.5 98 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 10 c2k5jB_ 97.8 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein yiif; PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1 11 c3kxeD_ 97.3 31 PDB header:protein binding Chain: D: PDB Molecule:antitoxin protein pard-1; PDBTitle: a conserved mode of protein recognition and binding in a2 pard-pare toxin-antitoxin complex 12 d2nzca1 97.0 17 Fold:Ferredoxin-like Superfamily:ACT-like Family:TM1266-like 13 d2cpga_ 93.2 32 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 14 c2k29A_ 91.5 26 PDB header:transcription Chain: A: PDB Molecule:antitoxin relb; PDBTitle: structure of the dbd domain of e. coli antitoxin relb 15 c2kelB_ 90.2 20 PDB header:transcription repressor Chain: B: PDB Molecule:uncharacterized protein 56b; PDBTitle: structure of the transcription regulator svtr from the2 hyperthermophilic archaeal virus sirv1 16 c3h87D_ 77.8 44 PDB header:toxin/antitoxin Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis 17 d1y9ba1 64.2 16 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:VCA0319-like 18 c2k9iB_ 59.3 12 PDB header:dna binding protein Chain: B: PDB Molecule:plasmid prn1, complete sequence; PDBTitle: nmr structure of plasmid copy control protein orf56 from2 sulfolobus islandicus 19 c3gxqB_ 55.8 31 PDB header:dna binding protein/dna Chain: B: PDB Molecule:putative regulator of transfer genes arta; PDBTitle: structure of arta and dna complex 20 d1p94a_ 55.1 14 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 21 d1ygya3 not modelled 36.6 8 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain 22 d1vioa2 not modelled 34.4 29 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 23 c2rbfB_ not modelled 32.3 26 PDB header:oxidoreductase/dna Chain: B: PDB Molecule:bifunctional protein puta; PDBTitle: structure of the ribbon-helix-helix domain of escherichia coli puta2 (puta52) complexed with operator dna (o2) 24 d2cyya2 not modelled 31.9 15 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 25 c2knjA_ not modelled 31.7 21 PDB header:antimicrobial protein Chain: A: PDB Molecule:microplusin preprotein; PDBTitle: nmr structure of microplusin a antimicrobial peptide from2 rhipicephalus (boophilus) microplus 26 c2e1cA_ not modelled 25.9 15 PDB header:transcription/dna Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519; PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex 27 d1c06a_ not modelled 25.2 36 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 28 d1sc6a3 not modelled 24.9 7 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain 29 c2vixB_ not modelled 24.5 11 PDB header:transport protein Chain: B: PDB Molecule:protein mxic; PDBTitle: methylated shigella flexneri mxic 30 d1l3la1 not modelled 24.3 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators) 31 d1p9ka_ not modelled 23.6 22 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:YbcJ-like 32 c2exuA_ not modelled 23.0 3 PDB header:transcription Chain: A: PDB Molecule:transcription initiation protein spt4/spt5; PDBTitle: crystal structure of saccharomyces cerevisiae transcription elongation2 factors spt4-spt5ngn domain 33 c2q2kA_ not modelled 21.1 36 PDB header:dna binding protein/dna Chain: A: PDB Molecule:hypothetical protein; PDBTitle: structure of nucleic-acid binding protein 34 d1u8sa1 not modelled 20.7 3 Fold:Ferredoxin-like Superfamily:ACT-like Family:Glycine cleavage system transcriptional repressor 35 c3m8jA_ not modelled 20.2 15 PDB header:transcription Chain: A: PDB Molecule:focb protein; PDBTitle: crystal structure of e.coli focb at 1.4 a resolution 36 c2qhoF_ not modelled 19.2 27 PDB header:protein binding/ligase Chain: F: PDB Molecule:e3 ubiquitin-protein ligase edd1; PDBTitle: crystal structure of the uba domain from edd ubiquitin2 ligase in complex with ubiquitin 37 c2kpoA_ not modelled 17.3 22 PDB header:de novo protein Chain: A: PDB Molecule:rossmann 2x2 fold protein; PDBTitle: solution nmr structure of de novo designed rossmann 2x2 fold protein,2 northeast structural genomics consortium target or16 38 c1u8sB_ not modelled 16.6 5 PDB header:transcription Chain: B: PDB Molecule:glycine cleavage system transcriptional PDBTitle: crystal structure of putative glycine cleavage system2 transcriptional repressor 39 c2cqjA_ not modelled 16.2 13 PDB header:rna binding protein Chain: A: PDB Molecule:u3 small nucleolar ribonucleoprotein protein PDBTitle: solution structure of the s4 domain of u3 small nucleolar2 ribonucleoprotein protein imp3 homolog 40 c2nyiB_ not modelled 16.1 5 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:unknown protein; PDBTitle: crystal structure of an unknown protein from galdieria2 sulphuraria 41 c2rnjA_ not modelled 15.7 9 PDB header:transcription Chain: A: PDB Molecule:response regulator protein vrar; PDBTitle: nmr structure of the s. aureus vrar dna binding domain 42 c2k6lA_ not modelled 15.5 23 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the solution structure of xacb0070 from xanthonomas2 axonopodis pv citri reveals this new protein is a member of3 the rhh family of transcriptional repressors 43 d2gnoa1 not modelled 15.3 11 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:DNA polymerase III clamp loader subunits, C-terminal domain 44 d1vhwa_ not modelled 15.0 22 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 45 d1xdia2 not modelled 14.5 25 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain 46 d2ac7a1 not modelled 14.5 19 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 47 d1f06a2 not modelled 14.5 32 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Dihydrodipicolinate reductase-like 48 c2x3dC_ not modelled 12.6 18 PDB header:unknown function Chain: C: PDB Molecule:sso6206; PDBTitle: crystal structure of sso6206 from sulfolobus solfataricus p2 49 d1k9sa_ not modelled 12.5 22 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 50 c2krfB_ not modelled 12.5 16 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulatory protein coma; PDBTitle: nmr solution structure of the dna binding domain of competence protein2 a 51 c3kk4B_ not modelled 12.4 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein bp1543; PDBTitle: uncharacterized protein bp1543 from bordetella pertussis tohama i 52 c3mntA_ not modelled 11.8 21 PDB header:transferase Chain: A: PDB Molecule:leucine carboxyl methyltransferase 1; PDBTitle: crystal structure of human leucine carboxyl methyltransferase 1 53 c2y9jt_ not modelled 11.8 12 PDB header:protein transport Chain: T: PDB Molecule:protein prgh; PDBTitle: three-dimensional model of salmonella's needle complex at2 subnanometer resolution 54 c2jpcA_ not modelled 11.5 7 PDB header:dna binding protein Chain: A: PDB Molecule:ssrb; PDBTitle: ssrb dna binding protein 55 c1zljE_ not modelled 11.3 12 PDB header:transcription Chain: E: PDB Molecule:dormancy survival regulator; PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic2 response regulator dosr c-terminal domain 56 d1sxjd1 not modelled 10.9 10 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:DNA polymerase III clamp loader subunits, C-terminal domain 57 c3b47A_ not modelled 10.5 23 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: periplasmic sensor domain of chemotaxis protein gsu0582 58 d2nwua1 not modelled 10.5 30 Fold:RL5-like Superfamily:RL5-like Family:SSO1042-like 59 c1yj7A_ not modelled 9.9 14 PDB header:protein transport Chain: A: PDB Molecule:escj; PDBTitle: crystal structure of enteropathogenic e.coli (epec) type iii secretion2 system protein escj 60 d1uyla_ not modelled 9.7 17 Fold:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Superfamily:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Family:Heat shock protein 90, HSP90, N-terminal domain 61 c2fwyA_ not modelled 9.7 17 PDB header:chaperone Chain: A: PDB Molecule:heat shock protein hsp 90-alpha; PDBTitle: structure of human hsp90-alpha bound to the potent water2 soluble inhibitor pu-h64 62 c1x3uA_ not modelled 9.6 6 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein fixj; PDBTitle: solution structure of the c-terminal transcriptional2 activator domain of fixj from sinorhizobium melilot 63 c3ieiD_ not modelled 9.4 21 PDB header:transferase Chain: D: PDB Molecule:leucine carboxyl methyltransferase 1; PDBTitle: crystal structure of human leucine carboxylmethyltransferase-1 in2 complex with s-adenosyl homocysteine 64 d2qy9a1 not modelled 9.4 16 Fold:Four-helical up-and-down bundle Superfamily:Domain of the SRP/SRP receptor G-proteins Family:Domain of the SRP/SRP receptor G-proteins 65 d1sr9a1 not modelled 9.3 17 Fold:RuvA C-terminal domain-like Superfamily:post-HMGL domain-like Family:DmpG/LeuA communication domain-like 66 d2raqa1 not modelled 9.3 18 Fold:Ferredoxin-like Superfamily:MTH889-like Family:MTH889-like 67 c2hwyB_ not modelled 9.2 25 PDB header:rna binding protein Chain: B: PDB Molecule:protein smg5; PDBTitle: structure of pin domain of human smg5. 68 c2nysA_ not modelled 9.2 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:agr_c_3712p; PDBTitle: x-ray crystal structure of protein agr_c_3712 from2 agrobacterium tumefaciens. northeast structural genomics3 consortium target atr88. 69 d2nysa1 not modelled 9.2 18 Fold:SspB-like Superfamily:SspB-like Family:AGR C 3712p-like 70 c2kebA_ not modelled 9.2 19 PDB header:dna binding protein Chain: A: PDB Molecule:dna polymerase subunit alpha b; PDBTitle: nmr solution structure of the n-terminal domain of the dna polymerase2 alpha p68 subunit 71 c3dh3C_ not modelled 8.8 31 PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate 72 d1rjda_ not modelled 8.8 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Leucine carboxy methyltransferase Ppm1 73 d2cg4a2 not modelled 8.2 10 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 74 c3ggzH_ not modelled 8.1 36 PDB header:protein transport, endocytosis Chain: H: PDB Molecule:vacuolar protein-sorting-associated protein 46; PDBTitle: crystal structure of s.cerevisiae ist1 n-terminal domain in2 complex with did2 mim motif 75 c2e1aD_ not modelled 8.1 10 PDB header:transcription Chain: D: PDB Molecule:75aa long hypothetical regulatory protein asnc; PDBTitle: crystal structure of ffrp-dm1 76 d1ebda3 not modelled 8.1 19 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain 77 c3b42B_ not modelled 8.0 22 PDB header:signaling protein Chain: B: PDB Molecule:methyl-accepting chemotaxis protein, putative; PDBTitle: periplasmic sensor domain of chemotaxis protein gsu0935 78 d1lvla3 not modelled 8.0 25 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain 79 c3ggzF_ not modelled 8.0 36 PDB header:protein transport, endocytosis Chain: F: PDB Molecule:vacuolar protein-sorting-associated protein 46; PDBTitle: crystal structure of s.cerevisiae ist1 n-terminal domain in2 complex with did2 mim motif 80 c3ggzE_ not modelled 8.0 36 PDB header:protein transport, endocytosis Chain: E: PDB Molecule:vacuolar protein-sorting-associated protein 46; PDBTitle: crystal structure of s.cerevisiae ist1 n-terminal domain in2 complex with did2 mim motif 81 c3ggzG_ not modelled 7.9 36 PDB header:protein transport, endocytosis Chain: G: PDB Molecule:vacuolar protein-sorting-associated protein 46; PDBTitle: crystal structure of s.cerevisiae ist1 n-terminal domain in2 complex with did2 mim motif 82 d1mnta_ not modelled 7.8 14 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 83 d1qxpa2 not modelled 7.8 9 Fold:EF Hand-like Superfamily:EF-hand Family:Penta-EF-hand proteins 84 d3bpda1 not modelled 7.8 18 Fold:Ferredoxin-like Superfamily:MTH889-like Family:MTH889-like 85 c2ia0A_ not modelled 7.6 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative hth-type transcriptional regulator pf0864; PDBTitle: transcriptional regulatory protein pf0864 from pyrococcus furiosus a2 member of the asnc family (pf0864) 86 c2c45F_ not modelled 7.5 36 PDB header:lyase Chain: F: PDB Molecule:aspartate 1-decarboxylase precursor; PDBTitle: native precursor of pyruvoyl dependent aspartate2 decarboxylase 87 d1zpva1 not modelled 7.4 8 Fold:Ferredoxin-like Superfamily:ACT-like Family:SP0238-like 88 d1cjya2 not modelled 7.3 13 Fold:FabD/lysophospholipase-like Superfamily:FabD/lysophospholipase-like Family:Lysophospholipase 89 d1nm2a2 not modelled 7.3 16 Fold:Ferredoxin-like Superfamily:Probable ACP-binding domain of malonyl-CoA ACP transacylase Family:Probable ACP-binding domain of malonyl-CoA ACP transacylase 90 d1odka_ not modelled 7.2 28 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 91 d2pzza1 not modelled 7.2 21 Fold:RL5-like Superfamily:RL5-like Family:SSO1042-like 92 c3m6jD_ not modelled 7.2 28 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of unknown function protein from leptospirillum2 rubarum 93 c3h7hB_ not modelled 7.2 17 PDB header:transcription Chain: B: PDB Molecule:transcription elongation factor spt5; PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273) 94 c2zwaA_ not modelled 7.1 48 PDB header:transferase Chain: A: PDB Molecule:leucine carboxyl methyltransferase 2; PDBTitle: crystal structure of trna wybutosine synthesizing enzyme2 tyw4 95 c2qasA_ not modelled 7.1 16 PDB header:hydrolase activator Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of caulobacter crescentus sspb ortholog 96 c2qazC_ not modelled 7.0 16 PDB header:hydrolase activator Chain: C: PDB Molecule:sspb protein; PDBTitle: structure of c. crescentus sspb ortholog 97 c3qv0A_ not modelled 7.0 38 PDB header:protein binding Chain: A: PDB Molecule:mitochondrial acidic protein mam33; PDBTitle: crystal structure of saccharomyces cerevisiae mam33 98 d1zrra1 not modelled 6.9 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acireductone dioxygenase 99 d2hs5a1 not modelled 6.9 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:GntR-like transcriptional regulators

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0