Email l.a.kelley@imperial.ac.uk Description P25960 Date Thu Jan 5 11:42:47 GMT 2012 Unique Job ID d74c1b8599c29552

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3s0xB_ 98.2 17 PDB header:hydrolase Chain: B: PDB Molecule:peptidase a24b, flak domain protein; PDBTitle: the crystal structure of gxgd membrane protease flak 2 c2k5cA_ 80.8 6 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein pf0385; PDBTitle: nmr structure for pf0385 3 c3py7A_ 80.8 12 PDB header:viral protein Chain: A: PDB Molecule:maltose-binding periplasmic protein,paxillin ld1,protein e6 PDBTitle: crystal structure of full-length bovine papillomavirus oncoprotein e62 in complex with ld1 motif of paxillin at 2.3a resolution 4 c2owoA_ 64.3 4 PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate 5 c1v9pB_ 63.6 0 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase 6 d1dgsa1 62.3 0 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 7 d1pfva3 60.0 7 Fold:Rubredoxin-like Superfamily:Methionyl-tRNA synthetase (MetRS), Zn-domain Family:Methionyl-tRNA synthetase (MetRS), Zn-domain 8 c2lcqA_ 55.3 7 PDB header:metal binding protein Chain: A: PDB Molecule:putative toxin vapc6; PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii 9 c1dgsB_ 54.4 4 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis 10 d1vd4a_ 53.9 5 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 11 d2fk4a1 53.0 10 Fold:E6 C-terminal domain-like Superfamily:E6 C-terminal domain-like Family:E6 C-terminal domain-like 12 d2jnea1 48.2 14 Fold:Rubredoxin-like Superfamily:YfgJ-like Family:YfgJ-like 13 c2jneA_ 48.2 14 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein yfgj; PDBTitle: nmr structure of e.coli yfgj modelled with two zn+2 bound.2 northeast structural genomics consortium target er317. 14 d2fiya1 45.8 13 Fold:FdhE-like Superfamily:FdhE-like Family:FdhE-like 15 d2gnra1 44.2 6 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:SSO2064-like 16 d2baya1 43.9 6 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 17 c2xeuA_ 43.5 15 PDB header:transcription Chain: A: PDB Molecule:ring finger protein 4; PDBTitle: ring domain 18 d1faqa_ 41.0 21 Fold:Cysteine-rich domain Superfamily:Cysteine-rich domain Family:Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) 19 c3pfqA_ 38.2 7 PDB header:transferase Chain: A: PDB Molecule:protein kinase c beta type; PDBTitle: crystal structure and allosteric activation of protein kinase c beta2 ii 20 d1rmda2 37.5 8 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 21 c2kr6A_ not modelled 36.9 17 PDB header:hydrolase Chain: A: PDB Molecule:presenilin-1; PDBTitle: solution structure of presenilin-1 ctf subunit 22 d2ctda2 not modelled 36.0 22 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 23 c3lrqB_ not modelled 35.6 5 PDB header:ligase Chain: B: PDB Molecule:e3 ubiquitin-protein ligase trim37; PDBTitle: crystal structure of the u-box domain of human ubiquitin-2 protein ligase (e3), northeast structural genomics3 consortium target hr4604d. 24 c2f42A_ not modelled 34.6 5 PDB header:chaperone Chain: A: PDB Molecule:stip1 homology and u-box containing protein 1; PDBTitle: dimerization and u-box domains of zebrafish c-terminal of hsp702 interacting protein 25 c2jmdA_ not modelled 33.1 5 PDB header:ligase Chain: A: PDB Molecule:tnf receptor-associated factor 6; PDBTitle: solution structure of the ring domain of human traf6 26 d1iyca_ not modelled 31.5 21 Fold:Invertebrate chitin-binding proteins Superfamily:Invertebrate chitin-binding proteins Family:Antifungal peptide scarabaecin 27 c3cngC_ not modelled 31.3 0 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 28 d2cu8a1 not modelled 28.8 10 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 29 c3ky9B_ not modelled 28.8 4 PDB header:apoptosis Chain: B: PDB Molecule:proto-oncogene vav; PDBTitle: autoinhibited vav1 30 c2eciA_ not modelled 28.7 5 PDB header:metal binding protein Chain: A: PDB Molecule:tnf receptor-associated factor 6; PDBTitle: solution structure of the ring domain of the human tnf2 receptor-associated factor 6 protein 31 d1vfya_ not modelled 28.5 19 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:FYVE, a phosphatidylinositol-3-phosphate binding domain 32 d1kbea_ not modelled 28.3 17 Fold:Cysteine-rich domain Superfamily:Cysteine-rich domain Family:Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) 33 c2db6A_ not modelled 28.2 3 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sh3 and cysteine rich domain 3; PDBTitle: solution structure of rsgi ruh-051, a c1 domain of stac32 from human cdna 34 d1dvpa2 not modelled 28.2 9 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:FYVE, a phosphatidylinositol-3-phosphate binding domain 35 d1s5pa_ not modelled 28.2 16 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 36 c2jrpA_ not modelled 28.2 0 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cytoplasmic protein; PDBTitle: solution nmr structure of yfgj from salmonella typhimurium2 modeled with two zn+2 bound, northeast structural genomics3 consortium target str86 37 c3llkA_ not modelled 28.0 10 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfhydryl oxidase 1; PDBTitle: sulfhydryl oxidase fragment of human qsox1 38 d2csha2 not modelled 27.9 18 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 39 c2klxA_ not modelled 27.4 12 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin; PDBTitle: solution structure of glutaredoxin from bartonella henselae str.2 houston 40 d1jm7a_ not modelled 26.2 0 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 41 c2i5oA_ not modelled 25.9 8 PDB header:transferase Chain: A: PDB Molecule:dna polymerase eta; PDBTitle: solution structure of the ubiquitin-binding zinc finger2 (ubz) domain of the human dna y-polymerase eta 42 d2cona1 not modelled 25.5 18 Fold:Rubredoxin-like Superfamily:NOB1 zinc finger-like Family:NOB1 zinc finger-like 43 d2ct1a1 not modelled 25.1 10 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 44 d1dsva_ not modelled 25.0 29 Fold:Retrovirus zinc finger-like domains Superfamily:Retrovirus zinc finger-like domains Family:Retrovirus zinc finger-like domains 45 c3zyqA_ not modelled 24.5 7 PDB header:signaling Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase PDBTitle: crystal structure of the tandem vhs and fyve domains of hepatocyte2 growth factor-regulated tyrosine kinase substrate (hgs-hrs) at 1.483 a resolution 46 d2c2la2 not modelled 24.1 5 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 47 c3odeA_ not modelled 23.4 7 PDB header:dna binding protein/dna Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: human parp-1 zinc finger 2 (zn2) bound to dna 48 d1ptqa_ not modelled 23.3 3 Fold:Cysteine-rich domain Superfamily:Cysteine-rich domain Family:Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) 49 d2vrda1 not modelled 22.3 0 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:HkH motif-containing C2H2 finger 50 c1dvpA_ not modelled 21.9 7 PDB header:transferase Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction 51 c1rfhA_ not modelled 21.1 22 PDB header:metal binding protein Chain: A: PDB Molecule:ras association (ralgds/af-6) domain family 5; PDBTitle: solution structure of the c1 domain of nore1, a novel ras2 effector 52 d2jnya1 not modelled 21.0 0 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 53 d1x4ka1 not modelled 20.9 20 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 54 d1r3jc_ not modelled 20.7 21 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 55 d1wfka_ not modelled 20.5 8 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:FYVE, a phosphatidylinositol-3-phosphate binding domain 56 d1yfua1 not modelled 20.4 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 57 d1tbna_ not modelled 20.2 10 Fold:Cysteine-rich domain Superfamily:Cysteine-rich domain Family:Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) 58 d2pk7a1 not modelled 20.1 0 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 59 c3ir9A_ not modelled 20.1 3 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:peptide chain release factor subunit 1; PDBTitle: c-terminal domain of peptide chain release factor from2 methanosarcina mazei. 60 c2j6aA_ not modelled 19.9 13 PDB header:transferase Chain: A: PDB Molecule:protein trm112; PDBTitle: crystal structure of s. cerevisiae ynr046w, a zinc finger2 protein from the erf1 methyltransferase complex. 61 d2c2vv1 not modelled 19.8 5 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 62 c2y43B_ not modelled 19.7 5 PDB header:ligase Chain: B: PDB Molecule:e3 ubiquitin-protein ligase rad18; PDBTitle: rad18 ubiquitin ligase ring domain structure 63 d2hf1a1 not modelled 19.5 0 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 64 d2gmga1 not modelled 19.1 0 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PF0610-like 65 c3nznA_ not modelled 19.1 10 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin; PDBTitle: the crystal structure of the glutaredoxin from methanosarcina mazei2 go1 66 c2ecyA_ not modelled 18.9 6 PDB header:apoptosis Chain: A: PDB Molecule:tnf receptor-associated factor 3; PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger)" domain of tnf receptor-associated factor 3 67 c2egpA_ not modelled 18.7 4 PDB header:antiviral protein Chain: A: PDB Molecule:tripartite motif-containing protein 34; PDBTitle: solution structure of the ring-finger domain from human2 tripartite motif protein 34 68 d2yrka1 not modelled 18.5 15 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:HkH motif-containing C2H2 finger 69 c2gb5B_ not modelled 18.5 0 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 70 c2dmjA_ not modelled 18.4 0 PDB header:transferase Chain: A: PDB Molecule:poly (adp-ribose) polymerase family, member 1; PDBTitle: solution structure of the first zf-parp domain of human2 poly(adp-ribose)polymerase-1 71 c2kreA_ not modelled 18.2 11 PDB header:protein binding Chain: A: PDB Molecule:ubiquitin conjugation factor e4 b; PDBTitle: solution structure of e4b/ufd2a u-box domain 72 d1iyma_ not modelled 17.7 0 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 73 c2jvyA_ not modelled 17.6 19 PDB header:metal binding protein Chain: A: PDB Molecule:nf-kappa-b essential modulator; PDBTitle: solution structure of the eda-id-related c417f mutant of2 human nemo zinc finger 74 c3glsC_ not modelled 17.6 0 PDB header:hydrolase Chain: C: PDB Molecule:nad-dependent deacetylase sirtuin-3, PDBTitle: crystal structure of human sirt3 75 c1z2qA_ not modelled 17.1 14 PDB header:membrane protein Chain: A: PDB Molecule:lm5-1; PDBTitle: high-resolution solution structure of the lm5-1 fyve domain2 from leishmania major 76 d2dara2 not modelled 16.9 5 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 77 d1tdza3 not modelled 16.9 0 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 78 d1t1ha_ not modelled 16.7 11 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 79 c1jocA_ not modelled 16.7 14 PDB header:membrane protein Chain: A: PDB Molecule:early endosomal autoantigen 1; PDBTitle: eea1 homodimer of c-terminal fyve domain bound to inositol2 1,3-diphosphate 80 d1rutx3 not modelled 16.7 7 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 81 c3mhsE_ not modelled 16.6 21 PDB header:hydrolase/transcription regulator/protei Chain: E: PDB Molecule:saga-associated factor 73; PDBTitle: structure of the saga ubp8/sgf11/sus1/sgf73 dub module bound to2 ubiquitin aldehyde 82 d1r2za3 not modelled 16.4 0 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 83 c2jr6A_ not modelled 16.4 0 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein nma0874; PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32 84 c3htkC_ not modelled 16.3 13 PDB header:recombination/replication/ligase Chain: C: PDB Molecule:e3 sumo-protein ligase mms21; PDBTitle: crystal structure of mms21 and smc5 complex 85 d1xx6a2 not modelled 16.0 22 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Type II thymidine kinase zinc finger 86 d1vqo11 not modelled 16.0 11 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37e 87 c2e7pC_ not modelled 15.9 4 PDB header:electron transport Chain: C: PDB Molecule:glutaredoxin; PDBTitle: crystal structure of the holo form of glutaredoxin c1 from populus2 tremula x tremuloides 88 c2e73A_ not modelled 15.7 7 PDB header:transferase Chain: A: PDB Molecule:protein kinase c gamma type; PDBTitle: solution structure of the phorbol esters/diacylglycerol2 binding domain of protein kinase c gamma 89 d1lkoa2 not modelled 15.4 11 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 90 c2zaeB_ not modelled 15.3 4 PDB header:hydrolase Chain: B: PDB Molecule:ribonuclease p protein component 4; PDBTitle: crystal structure of protein ph1601p in complex with protein ph1771p2 of archaeal ribonuclease p from pyrococcus horikoshii ot3 91 c3gkxB_ not modelled 15.3 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative arsc family related protein; PDBTitle: crystal structure of putative arsc family related protein from2 bacteroides fragilis 92 c2js4A_ not modelled 15.2 0 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein bb2007; PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54 93 c2h0dB_ not modelled 15.2 16 PDB header:metal binding protein/ligase Chain: B: PDB Molecule:ubiquitin ligase protein ring2; PDBTitle: structure of a bmi-1-ring1b polycomb group ubiquitin ligase complex 94 c3nw0A_ not modelled 15.0 0 PDB header:metal binding protein Chain: A: PDB Molecule:non-structural maintenance of chromosomes element 1 PDBTitle: crystal structure of mageg1 and nse1 complex 95 c3i2dA_ not modelled 15.0 13 PDB header:ligase Chain: A: PDB Molecule:e3 sumo-protein ligase siz1; PDBTitle: crystal structure of s. cerevisiae sumo e3 ligase siz1 96 d1yc5a1 not modelled 15.0 9 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 97 d1imla2 not modelled 14.8 9 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 98 c1v9xA_ not modelled 14.7 0 PDB header:transferase Chain: A: PDB Molecule:poly (adp-ribose) polymerase; PDBTitle: solution structure of the first zn-finger domain of2 poly(adp-ribose) polymerase-1 99 d1q1aa_ not modelled 14.7 0 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators