Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	P	S	R	N	F	D	D	L	K	F	S	S	I	H	R	R	I	L	L	W	G	S	G	G	P	F	L	D	G	Y	V	L	V	M	I	G	V	A	L	E	Q	L	T	P	A	L	K	L	D	A	D	W	I	G	L	L	G	A
Secondary structure
SS confidence
Disorder		?	?				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	T	L	A	G	L	F	V	G	T	S	L	F	G	Y	I	S	D	K	V	G	R	R	K	M	F	L	I	D	I	I	A	I	G	V	I	S	V	A	T	M	F	V	S	S	P	V	E	L	L	V	M	R	V	L	I	G	I	V	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	A	D	Y	P	I	A	T	S	M	I	T	E	F	S	S	T	R	Q	R	A	F	S	I	S	F	I	A	A	M	W	Y	V	G	A	T	C	A	D	L	V	G	Y	W	L	Y	D	V	E	G	G	W	R	W	M	L	G	S	A	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	P	C	L	L	I	L	I	G	R	F	E	L	P	E	S	P	R	W	L	L	R	K	G	R	V	K	E	C	E	E	M	M	I	K	L	F	G	E	P	V	A	F	D	E	E	Q	P	Q	Q	T	R	F	R	D	L	F	N	R	R
Secondary structure
SS confidence
Disorder																																								?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		H	F	P	F	V	L	F	V	A	A	I	W	T	C	Q	V	I	P	M	F	A	I	Y	T	F	G	P	Q	I	V	G	L	L	G	L	G	V	G	K	N	A	A	L	G	N	V	V	I	S	L	F	F	M	L	G	C	I	P	P	M
Secondary structure
SS confidence
Disorder																																		?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		L	W	L	N	T	A	G	R	R	P	L	L	I	G	S	F	A	M	M	T	L	A	L	A	V	L	G	L	I	P	D	M	G	I	W	L	V	V	M	A	F	A	V	Y	A	F	F	S	G	G	P	G	N	L	Q	W	L	Y	P	N
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		E	L	F	P	T	D	I	R	A	S	A	V	G	V	I	M	S	L	S	R	I	G	T	I	V	S	T	W	A	L	P	I	F	I	N	N	Y	G	I	S	N	T	M	L	M	G	A	G	I	S	L	F	G	L	L	I	S	V	A	F
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
Sequence		A	P	E	T	R	G	M	S	L	A	Q	T	S	N	M	T	I	R	G	Q	R	M	G
Secondary structure
SS confidence
Disorder																		?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1pw4 chain A Region: 2 - 435 Aligned: 418 Modelled: 420 Confidence: 100.0% Identity: 14% Fold: MFS general substrate transporter Superfamily: MFS general substrate transporter Family: Glycerol-3-phosphate transporter Phyre2 PDB 1pv7 chain A Region: 12 - 437 Aligned: 414 Modelled: 426 Confidence: 100.0% Identity: 13% Fold: MFS general substrate transporter Superfamily: MFS general substrate transporter Family: LacY-like proton/sugar symporter Phyre2 PDB 3o7p chain A Region: 18 - 424 Aligned: 402 Modelled: 407 Confidence: 99.9% Identity: 11% PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) Phyre2 PDB 2gfp chain A Region: 19 - 414 Aligned: 369 Modelled: 370 Confidence: 99.9% Identity: 15% PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Phyre2 PDB 2xut chain C Region: 21 - 420 Aligned: 400 Modelled: 400 Confidence: 99.9% Identity: 12% PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter. Phyre2 PDB 3b9y chain A Region: 5 - 240 Aligned: 228 Modelled: 236 Confidence: 44.8% Identity: 9% PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein Phyre2 PDB 3hd6 chain A Region: 225 - 440 Aligned: 208 Modelled: 216 Confidence: 42.6% Identity: 10% PDB header:membrane protein, transport protein Chain: A: PDB Molecule:ammonium transporter rh type c; PDBTitle: crystal structure of the human rhesus glycoprotein rhcg Phyre2 PDB 3ff5 chain B Region: 423 - 438 Aligned: 16 Modelled: 16 Confidence: 30.1% Identity: 6% PDB header:protein transport Chain: B: PDB Molecule:peroxisomal biogenesis factor 14; PDBTitle: crystal structure of the conserved n-terminal domain of the2 peroxisomal matrix-protein-import receptor, pex14p Phyre2 PDB 2f9j chain P Region: 425 - 442 Aligned: 18 Modelled: 18 Confidence: 27.0% Identity: 22% PDB header:rna binding protein Chain: P: PDB Molecule:splicing factor 3b subunit 1; PDBTitle: 3.0 angstrom resolution structure of a y22m mutant of the spliceosomal2 protein p14 bound to a region of sf3b155 Phyre2 PDB 1fs1 chain B domain 1 Region: 425 - 436 Aligned: 12 Modelled: 12 Confidence: 26.3% Identity: 8% Fold: Skp1 dimerisation domain-like Superfamily: Skp1 dimerisation domain-like Family: Skp1 dimerisation domain-like Phyre2 PDB 2w85 chain A Region: 423 - 441 Aligned: 19 Modelled: 19 Confidence: 25.4% Identity: 5% PDB header:protein transport Chain: A: PDB Molecule:peroxisomal membrane anchor protein pex14; PDBTitle: structure of pex14 in compex with pex19 Phyre2 PDB 2fx0 chain A domain 2 Region: 421 - 443 Aligned: 23 Modelled: 23 Confidence: 24.8% Identity: 17% Fold: Tetracyclin repressor-like, C-terminal domain Superfamily: Tetracyclin repressor-like, C-terminal domain Family: Tetracyclin repressor-like, C-terminal domain Phyre2 PDB 3c9p chain A Region: 423 - 435 Aligned: 13 Modelled: 13 Confidence: 21.1% Identity: 15% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sp1917; PDBTitle: crystal structure of uncharacterized protein sp1917 Phyre2 PDB 2wwa chain A Region: 1 - 81 Aligned: 72 Modelled: 81 Confidence: 17.2% Identity: 17% PDB header:ribosome Chain: A: PDB Molecule:sec sixty-one protein homolog; PDBTitle: cryo-em structure of idle yeast ssh1 complex bound to the2 yeast 80s ribosome Phyre2 PDB 1fs2 chain B domain 1 Region: 425 - 436 Aligned: 12 Modelled: 12 Confidence: 16.8% Identity: 8% Fold: Skp1 dimerisation domain-like Superfamily: Skp1 dimerisation domain-like Family: Skp1 dimerisation domain-like Phyre2 PDB 3mmy chain F Region: 420 - 441 Aligned: 22 Modelled: 22 Confidence: 15.4% Identity: 14% PDB header:nuclear protein Chain: F: PDB Molecule:nuclear pore complex protein nup98; PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1 Phyre2 PDB 1miu chain A domain 4 Region: 427 - 442 Aligned: 16 Modelled: 16 Confidence: 15.0% Identity: 19% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Single strand DNA-binding domain, SSB Phyre2 PDB 1ofc chain X domain 1 Region: 423 - 434 Aligned: 12 Modelled: 12 Confidence: 12.9% Identity: 8% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Myb/SANT domain Phyre2 PDB 2g9p chain A Region: 72 - 85 Aligned: 14 Modelled: 14 Confidence: 12.8% Identity: 43% PDB header:antimicrobial protein Chain: A: PDB Molecule:antimicrobial peptide latarcin 2a; PDBTitle: nmr structure of a novel antimicrobial peptide, latarcin 2a,2 from spider (lachesana tarabaevi) venom Phyre2 PDB 1nex chain A domain 1 Region: 425 - 436 Aligned: 12 Modelled: 12 Confidence: 12.6% Identity: 25% Fold: Skp1 dimerisation domain-like Superfamily: Skp1 dimerisation domain-like Family: Skp1 dimerisation domain-like Phyre2 1 d1pw4a_ 2 d1pv7a_ 3 c3o7pA_ 4 c2gfpA_ 5 c2xutC_ 6 c3b9yA_ 7 c3hd6A_ 8 c3ff5B_ 9 c2f9jP_ 10 d1fs1b1 11 c2w85A_ 12 d2fx0a2 13 c3c9pA_ 14 c2wwaA_ 15 d1fs2b1 16 c3mmyF_ 17 d1miua4 18 d1ofcx1 19 c2g9pA_ 20 d1nexa1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1pw4a_ 100.0 14 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:Glycerol-3-phosphate transporter 2 d1pv7a_ 100.0 13 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:LacY-like proton/sugar symporter 3 c3o7pA_ 99.9 11 PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) 4 c2gfpA_ 99.9 15 PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli 5 c2xutC_ 99.9 12 PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter. 6 c3b9yA_ 44.8 9 PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein 7 c3hd6A_ 42.6 10 PDB header:membrane protein, transport protein Chain: A: PDB Molecule:ammonium transporter rh type c; PDBTitle: crystal structure of the human rhesus glycoprotein rhcg 8 c3ff5B_ 30.1 6 PDB header:protein transport Chain: B: PDB Molecule:peroxisomal biogenesis factor 14; PDBTitle: crystal structure of the conserved n-terminal domain of the2 peroxisomal matrix-protein-import receptor, pex14p 9 c2f9jP_ 27.0 22 PDB header:rna binding protein Chain: P: PDB Molecule:splicing factor 3b subunit 1; PDBTitle: 3.0 angstrom resolution structure of a y22m mutant of the spliceosomal2 protein p14 bound to a region of sf3b155 10 d1fs1b1 26.3 8 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 11 c2w85A_ 25.4 5 PDB header:protein transport Chain: A: PDB Molecule:peroxisomal membrane anchor protein pex14; PDBTitle: structure of pex14 in compex with pex19 12 d2fx0a2 24.8 17 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 13 c3c9pA_ 21.1 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sp1917; PDBTitle: crystal structure of uncharacterized protein sp1917 14 c2wwaA_ 17.2 17 PDB header:ribosome Chain: A: PDB Molecule:sec sixty-one protein homolog; PDBTitle: cryo-em structure of idle yeast ssh1 complex bound to the2 yeast 80s ribosome 15 d1fs2b1 16.8 8 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 16 c3mmyF_ 15.4 14 PDB header:nuclear protein Chain: F: PDB Molecule:nuclear pore complex protein nup98; PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1 17 d1miua4 15.0 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 18 d1ofcx1 12.9 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 19 c2g9pA_ 12.8 43 PDB header:antimicrobial protein Chain: A: PDB Molecule:antimicrobial peptide latarcin 2a; PDBTitle: nmr structure of a novel antimicrobial peptide, latarcin 2a,2 from spider (lachesana tarabaevi) venom 20 d1nexa1 12.6 25 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 21 d1xeqa1 not modelled 12.5 24 Fold:S15/NS1 RNA-binding domain Superfamily:S15/NS1 RNA-binding domain Family:N-terminal, RNA-binding domain of nonstructural protein NS1 22 c1by0A_ not modelled 11.4 6 PDB header:rna binding protein Chain: A: PDB Molecule:protein (hepatitis delta antigen); PDBTitle: n-terminal leucine-repeat region of hepatitis delta antigen 23 c3r66A_ not modelled 11.4 24 PDB header:viral protein/antiviral protein Chain: A: PDB Molecule:non-structural protein 1; PDBTitle: crystal structure of human isg15 in complex with ns1 n-terminal region2 from influenza virus b, northeast structural genomics consortium3 target ids hx6481, hr2873, and or2 24 d2ovra1 not modelled 11.2 8 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 25 d2csba1 not modelled 11.2 15 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 26 d2j85a1 not modelled 10.7 15 Fold:STIV B116-like Superfamily:STIV B116-like Family:STIV B116-like 27 d1xjsa_ not modelled 9.7 9 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 28 d1xpja_ not modelled 9.2 17 Fold:HAD-like Superfamily:HAD-like Family:Hypothetical protein VC0232 29 d2bs2c1 not modelled 9.0 19 Fold:Heme-binding four-helical bundle Superfamily:Fumarate reductase respiratory complex transmembrane subunits Family:Fumarate reductase respiratory complex cytochrome b subunit, FrdC 30 c3dinF_ not modelled 8.6 15 PDB header:membrane protein, protein transport Chain: F: PDB Molecule:preprotein translocase subunit secy; PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase 31 d1iyjb4 not modelled 8.5 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 32 c3qnqD_ not modelled 8.4 8 PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system 33 d2a26a1 not modelled 8.3 16 Fold:Long alpha-hairpin Superfamily:Calcyclin-binding protein-like Family:Siah interacting protein N terminal domain-like 34 c2vpzG_ not modelled 8.0 16 PDB header:oxidoreductase Chain: G: PDB Molecule:hypothetical membrane spanning protein; PDBTitle: polysulfide reductase native structure 35 d1y7oa1 not modelled 8.0 22 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Clp protease, ClpP subunit 36 d1ee8a1 not modelled 7.8 14 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 37 c2a7wF_ not modelled 7.8 14 PDB header:hydrolase Chain: F: PDB Molecule:phosphoribosyl-atp pyrophosphatase; PDBTitle: crystal structure of phosphoribosyl-atp pyrophosphatase2 from chromobacterium violaceum (atcc 12472). nesg target3 cvr7 38 d2a7wa1 not modelled 7.8 14 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:HisE-like (PRA-PH) 39 d1agxa_ not modelled 7.4 20 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 40 c1egpA_ not modelled 7.3 27 PDB header:proteinase inhibitor Chain: A: PDB Molecule:eglin-c; PDBTitle: proteinase inhibitor eglin c with hydrolysed reactive center 41 c3ig4E_ not modelled 7.3 0 PDB header:hydrolase Chain: E: PDB Molecule:xaa-pro aminopeptidase; PDBTitle: structure of a putative aminopeptidase p from bacillus anthracis 42 c3nxkE_ not modelled 7.1 0 PDB header:hydrolase Chain: E: PDB Molecule:cytoplasmic l-asparaginase; PDBTitle: crystal structure of probable cytoplasmic l-asparaginase from2 campylobacter jejuni 43 d1gu7a2 not modelled 7.1 21 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain 44 d1pyya2 not modelled 7.0 11 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 45 c2ht2B_ not modelled 7.0 14 PDB header:membrane protein Chain: B: PDB Molecule:h(+)/cl(-) exchange transporter clca; PDBTitle: structure of the escherichia coli clc chloride channel2 y445h mutant and fab complex 46 c2zqpY_ not modelled 7.0 9 PDB header:protein transport Chain: Y: PDB Molecule:preprotein translocase secy subunit; PDBTitle: crystal structure of secye translocon from thermus2 thermophilus 47 d1su0b_ not modelled 7.0 12 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 48 c3m0zD_ not modelled 6.9 5 PDB header:lyase Chain: D: PDB Molecule:putative aldolase; PDBTitle: crystal structure of putative aldolase from klebsiella2 pneumoniae. 49 d1rp5a2 not modelled 6.9 11 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 50 c3pvpA_ not modelled 6.8 22 PDB header:dna binding protein/dna Chain: A: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: structure of mycobacterium tuberculosis dnaa-dbd in complex with box22 dna 51 d1ysma1 not modelled 6.7 16 Fold:Long alpha-hairpin Superfamily:Calcyclin-binding protein-like Family:Siah interacting protein N terminal domain-like 52 c1ysmA_ not modelled 6.7 16 PDB header:metal binding protein Chain: A: PDB Molecule:calcyclin-binding protein; PDBTitle: nmr structure of n-terminal domain (residues 1-77) of siah-2 interacting protein. 53 c2kdcC_ not modelled 6.5 10 PDB header:transferase Chain: C: PDB Molecule:diacylglycerol kinase; PDBTitle: nmr solution structure of e. coli diacylglycerol kinase2 (dagk) in dpc micelles 54 d1ov9a_ not modelled 6.4 13 Fold:H-NS histone-like proteins Superfamily:H-NS histone-like proteins Family:H-NS histone-like proteins 55 d1k25a2 not modelled 6.3 11 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 56 c3cvfA_ not modelled 6.2 31 PDB header:signaling protein Chain: A: PDB Molecule:homer protein homolog 3; PDBTitle: crystal structure of the carboxy terminus of homer3 57 c1y7oE_ not modelled 6.1 22 PDB header:hydrolase Chain: E: PDB Molecule:atp-dependent clp protease proteolytic subunit; PDBTitle: the structure of streptococcus pneumoniae a153p clpp 58 d1tdza1 not modelled 6.1 14 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 59 d1wfza_ not modelled 6.1 8 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 60 c2yxhB_ not modelled 6.1 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mazg-related protein; PDBTitle: crystal structure of mazg-related protein from thermotoga maritima 61 d1ymga1 not modelled 6.1 13 Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like 62 c1ymgA_ not modelled 6.1 13 PDB header:membrane protein Chain: A: PDB Molecule:lens fiber major intrinsic protein; PDBTitle: the channel architecture of aquaporin o at 2.2 angstrom resolution 63 d1nh2d1 not modelled 5.9 23 Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain 64 c3bzjA_ not modelled 5.8 27 PDB header:hydrolase Chain: A: PDB Molecule:uv endonuclease; PDBTitle: uvde k229l 65 c2p1nD_ not modelled 5.8 8 PDB header:signaling protein Chain: D: PDB Molecule:skp1-like protein 1a; PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase 66 d1ni8a_ not modelled 5.8 21 Fold:H-NS histone-like proteins Superfamily:H-NS histone-like proteins Family:H-NS histone-like proteins 67 c2wltA_ not modelled 5.8 14 PDB header:hydrolase Chain: A: PDB Molecule:l-asparaginase; PDBTitle: the crystal structure of helicobacter pylori l-asparaginase2 at 1.4 a resolution 68 c2zkrv_ not modelled 5.7 11 PDB header:ribosomal protein/rna Chain: V: PDB Molecule:rna expansion segment es9 part2; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 69 c3q7hM_ not modelled 5.7 17 PDB header:hydrolase Chain: M: PDB Molecule:atp-dependent clp protease proteolytic subunit; PDBTitle: structure of the clpp subunit of the atp-dependent clp protease from2 coxiella burnetii 70 d1nvpd1 not modelled 5.7 23 Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain 71 c3hd7A_ not modelled 5.6 16 PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 72 c3cveC_ not modelled 5.4 32 PDB header:signaling protein Chain: C: PDB Molecule:homer protein homolog 1; PDBTitle: crystal structure of the carboxy terminus of homer1 73 c1yewC_ not modelled 5.4 14 PDB header:oxidoreductase, membrane protein Chain: C: PDB Molecule:particulate methane monooxygenase subunit c2; PDBTitle: crystal structure of particulate methane monooxygenase 74 c3hm5A_ not modelled 5.3 7 PDB header:transcription Chain: A: PDB Molecule:dna methyltransferase 1-associated protein 1; PDBTitle: sant domain of human dna methyltransferase 1 associated2 protein 1 75 c3rkoK_ not modelled 5.3 14 PDB header:oxidoreductase Chain: K: PDB Molecule:nadh-quinone oxidoreductase subunit k; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 76 d1v54i_ not modelled 5.2 15 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIc Family:Mitochondrial cytochrome c oxidase subunit VIc 77 d1vqov1 not modelled 5.2 21 Fold:Long alpha-hairpin Superfamily:Ribosomal protein L29 (L29p) Family:Ribosomal protein L29 (L29p) 78 d4pgaa_ not modelled 5.2 7 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 79 d1j1va_ not modelled 5.2 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:TrpR-like Family:Chromosomal replication initiation factor DnaA C-terminal domain IV 80 d1o08a_ not modelled 5.2 19 Fold:HAD-like Superfamily:HAD-like Family:beta-Phosphoglucomutase-like 81 c3u4gA_ not modelled 5.1 20 PDB header:transferase Chain: A: PDB Molecule:namn:dmb phosphoribosyltransferase; PDBTitle: the structure of cobt from pyrococcus horikoshii 82 d1nnsa_ not modelled 5.1 13 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 83 c3bboZ_ not modelled 5.1 14 PDB header:ribosome Chain: Z: PDB Molecule:ribosomal protein l29; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 84 d2p8ta1 not modelled 5.1 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PH0730 N-terminal domain-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0