Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	T	P	L	V	T	R	E	G	Y	E	K	L	K	Q	E	L	N	Y	L	W	R	E	E	R	P	E	V	T	K	K	V	T	W	A	A	S	L	G	D	R	S	E	N	A	D	Y	Q	Y	N	K	K	R	L	R	E	I	D	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																															?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	V	R	Y	L	T	K	C	L	E	N	L	K	I	V	D	Y	S	P	Q	Q	E	G	K	V	F	F	G	A	W	V	E	I	E	N	D	D	G	V	T	H	R	F	R	I	V	G	Y	D	E	I	F	G	R	K	D	Y	I	S	I
Secondary structure
SS confidence
Disorder																	?		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Sequence		D	S	P	M	A	R	A	L	L	K	K	E	V	G	D	L	A	V	V	N	T	P	A	G	E	A	S	W	Y	V	N	A	I	E	Y	V	K	P
Secondary structure
SS confidence
Disorder																																				?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2p4v chain A Region: 1 - 156 Aligned: 156 Modelled: 156 Confidence: 100.0% Identity: 99% PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor greb; PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution Phyre2 PDB 1grj chain A Region: 2 - 156 Aligned: 149 Modelled: 155 Confidence: 100.0% Identity: 34% PDB header:transcription regulation Chain: A: PDB Molecule:grea protein; PDBTitle: grea transcript cleavage factor from escherichia coli Phyre2 PDB 2etn chain A Region: 2 - 154 Aligned: 150 Modelled: 153 Confidence: 100.0% Identity: 27% PDB header:transcription Chain: A: PDB Molecule:anti-cleavage anti-grea transcription factor PDBTitle: crystal structure of thermus aquaticus gfh1 Phyre2 PDB 3bmb chain B Region: 3 - 157 Aligned: 122 Modelled: 122 Confidence: 100.0% Identity: 20% PDB header:rna binding protein Chain: B: PDB Molecule:regulator of nucleoside diphosphate kinase; PDBTitle: crystal structure of a new rna polymerase interacting2 protein Phyre2 PDB 2pn0 chain D Region: 26 - 155 Aligned: 119 Modelled: 119 Confidence: 100.0% Identity: 24% PDB header:transcription Chain: D: PDB Molecule:prokaryotic transcription elongation factor PDBTitle: prokaryotic transcription elongation factor grea/greb from2 nitrosomonas europaea Phyre2 PDB 1grj chain A domain 1 Region: 2 - 78 Aligned: 77 Modelled: 77 Confidence: 99.9% Identity: 29% Fold: Long alpha-hairpin Superfamily: GreA transcript cleavage protein, N-terminal domain Family: GreA transcript cleavage protein, N-terminal domain Phyre2 PDB 2f23 chain A domain 1 Region: 2 - 76 Aligned: 74 Modelled: 75 Confidence: 99.9% Identity: 26% Fold: Long alpha-hairpin Superfamily: GreA transcript cleavage protein, N-terminal domain Family: GreA transcript cleavage protein, N-terminal domain Phyre2 PDB 2f23 chain A domain 2 Region: 81 - 154 Aligned: 74 Modelled: 74 Confidence: 99.9% Identity: 32% Fold: FKBP-like Superfamily: FKBP-like Family: GreA transcript cleavage factor, C-terminal domain Phyre2 PDB 2etn chain A domain 2 Region: 81 - 153 Aligned: 73 Modelled: 73 Confidence: 99.8% Identity: 33% Fold: FKBP-like Superfamily: FKBP-like Family: GreA transcript cleavage factor, C-terminal domain Phyre2 PDB 1grj chain A domain 2 Region: 80 - 156 Aligned: 71 Modelled: 77 Confidence: 99.8% Identity: 39% Fold: FKBP-like Superfamily: FKBP-like Family: GreA transcript cleavage factor, C-terminal domain Phyre2 PDB 3gty chain X Region: 56 - 158 Aligned: 94 Modelled: 103 Confidence: 95.5% Identity: 17% PDB header:chaperone/ribosomal protein Chain: X: PDB Molecule:trigger factor; PDBTitle: promiscuous substrate recognition in folding and assembly activities2 of the trigger factor chaperone Phyre2 PDB 1w26 chain B Region: 56 - 158 Aligned: 95 Modelled: 103 Confidence: 93.2% Identity: 16% PDB header:chaperone Chain: B: PDB Molecule:trigger factor; PDBTitle: trigger factor in complex with the ribosome forms a2 molecular cradle for nascent proteins Phyre2 PDB 1w26 chain A domain 3 Region: 56 - 142 Aligned: 77 Modelled: 87 Confidence: 91.1% Identity: 14% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 1t11 chain A domain 3 Region: 56 - 142 Aligned: 79 Modelled: 87 Confidence: 89.9% Identity: 18% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 1t11 chain A Region: 58 - 141 Aligned: 76 Modelled: 84 Confidence: 83.6% Identity: 16% PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: trigger factor Phyre2 PDB 3o0p chain A Region: 128 - 158 Aligned: 31 Modelled: 31 Confidence: 68.8% Identity: 26% PDB header:transferase , hydrolase Chain: A: PDB Molecule:sortase family protein; PDBTitle: pilus-related sortase c of group b streptococcus Phyre2 PDB 1ndh chain A domain 1 Region: 87 - 149 Aligned: 63 Modelled: 63 Confidence: 68.5% Identity: 14% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Riboflavin synthase domain-like Family: Ferredoxin reductase FAD-binding domain-like Phyre2 PDB 1cz5 chain A Region: 85 - 158 Aligned: 69 Modelled: 74 Confidence: 67.9% Identity: 22% PDB header:hydrolase Chain: A: PDB Molecule:vcp-like atpase; PDBTitle: nmr structure of vat-n: the n-terminal domain of vat (vcp-2 like atpase of thermoplasma) Phyre2 PDB 2kw8 chain A Region: 128 - 158 Aligned: 31 Modelled: 31 Confidence: 67.7% Identity: 19% PDB header:protein binding Chain: A: PDB Molecule:lpxtg-site transpeptidase family protein; PDBTitle: solution structure of bacillus anthracis sortase a (srta)2 transpeptidase Phyre2 PDB 1t2w chain A Region: 128 - 158 Aligned: 31 Modelled: 31 Confidence: 66.5% Identity: 19% Fold: Sortase Superfamily: Sortase Family: Sortase Phyre2 1 c2p4vA_ 2 c1grjA_ 3 c2etnA_ 4 c3bmbB_ 5 c2pn0D_ 6 d1grja1 7 d2f23a1 8 d2f23a2 9 d2etna2 10 d1grja2 11 c3gtyX_ 12 c1w26B_ 13 d1w26a3 14 d1t11a3 15 c1t11A_ 16 c3o0pA_ 17 d1ndha1 18 c1cz5A_ 19 c2kw8A_ 20 d1t2wa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2p4vA_ 100.0 99 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor greb; PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution 2 c1grjA_ 100.0 34 PDB header:transcription regulation Chain: A: PDB Molecule:grea protein; PDBTitle: grea transcript cleavage factor from escherichia coli 3 c2etnA_ 100.0 27 PDB header:transcription Chain: A: PDB Molecule:anti-cleavage anti-grea transcription factor PDBTitle: crystal structure of thermus aquaticus gfh1 4 c3bmbB_ 100.0 20 PDB header:rna binding protein Chain: B: PDB Molecule:regulator of nucleoside diphosphate kinase; PDBTitle: crystal structure of a new rna polymerase interacting2 protein 5 c2pn0D_ 100.0 24 PDB header:transcription Chain: D: PDB Molecule:prokaryotic transcription elongation factor PDBTitle: prokaryotic transcription elongation factor grea/greb from2 nitrosomonas europaea 6 d1grja1 99.9 29 Fold:Long alpha-hairpin Superfamily:GreA transcript cleavage protein, N-terminal domain Family:GreA transcript cleavage protein, N-terminal domain 7 d2f23a1 99.9 26 Fold:Long alpha-hairpin Superfamily:GreA transcript cleavage protein, N-terminal domain Family:GreA transcript cleavage protein, N-terminal domain 8 d2f23a2 99.9 32 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 9 d2etna2 99.8 33 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 10 d1grja2 99.8 39 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 11 c3gtyX_ 95.5 17 PDB header:chaperone/ribosomal protein Chain: X: PDB Molecule:trigger factor; PDBTitle: promiscuous substrate recognition in folding and assembly activities2 of the trigger factor chaperone 12 c1w26B_ 93.2 16 PDB header:chaperone Chain: B: PDB Molecule:trigger factor; PDBTitle: trigger factor in complex with the ribosome forms a2 molecular cradle for nascent proteins 13 d1w26a3 91.1 14 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 14 d1t11a3 89.9 18 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 15 c1t11A_ 83.6 16 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: trigger factor 16 c3o0pA_ 68.8 26 PDB header:transferase , hydrolase Chain: A: PDB Molecule:sortase family protein; PDBTitle: pilus-related sortase c of group b streptococcus 17 d1ndha1 68.5 14 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 18 c1cz5A_ 67.9 22 PDB header:hydrolase Chain: A: PDB Molecule:vcp-like atpase; PDBTitle: nmr structure of vat-n: the n-terminal domain of vat (vcp-2 like atpase of thermoplasma) 19 c2kw8A_ 67.7 19 PDB header:protein binding Chain: A: PDB Molecule:lpxtg-site transpeptidase family protein; PDBTitle: solution structure of bacillus anthracis sortase a (srta)2 transpeptidase 20 d1t2wa_ 66.5 19 Fold:Sortase Superfamily:Sortase Family:Sortase 21 d1krha1 not modelled 66.1 15 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 22 d1umka1 not modelled 65.9 16 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 23 d2cnda1 not modelled 65.8 14 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 24 d1qx4a1 not modelled 65.1 16 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 25 c3re9A_ not modelled 62.2 23 PDB header:transferase Chain: A: PDB Molecule:sortase-like protein; PDBTitle: crystal structure of sortasec1 from streptococcus suis 26 c3fn5B_ not modelled 61.5 13 PDB header:hydrolase Chain: B: PDB Molecule:sortase a; PDBTitle: crystal structure of sortase a (spy1154) from streptococcus2 pyogenes serotype m1 strain sf370 27 d2piaa1 not modelled 60.8 14 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 28 c3g66A_ not modelled 60.5 26 PDB header:transferase Chain: A: PDB Molecule:sortase c; PDBTitle: the crystal structure of streptococcus pneumoniae sortase c2 provides novel insights into catalysis as well as pilin3 substrate specificity 29 c2xwgA_ not modelled 59.9 32 PDB header:hydrolase Chain: A: PDB Molecule:sortase; PDBTitle: crystal structure of sortase c-1 from actinomyces oris (formerly2 actinomyces naeslundii) 30 c2w1kB_ not modelled 59.2 19 PDB header:transferase Chain: B: PDB Molecule:putative sortase; PDBTitle: crystal structure of sortase c-3 (srtc-3) from2 streptococcus pneumoniae 31 d1fdra1 not modelled 52.5 19 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 32 c3rccI_ not modelled 52.4 16 PDB header:hydrolase Chain: I: PDB Molecule:sortase srta; PDBTitle: crystal structure of the streptococcus agalactiae sortase a 33 d1e32a3 not modelled 50.8 15 Fold:Cdc48 domain 2-like Superfamily:Cdc48 domain 2-like Family:Cdc48 domain 2-like 34 d1l1pa_ not modelled 49.9 5 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 35 c1zeqX_ not modelled 49.4 13 PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli 36 c2kfwA_ not modelled 47.8 40 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase PDBTitle: solution structure of full-length slyd from e.coli 37 c3rbjB_ not modelled 47.5 29 PDB header:hydrolase Chain: B: PDB Molecule:sortase family protein; PDBTitle: crystal structure of the lid-mutant of streptococcus agalactiae2 sortase c1 38 c2pjhB_ not modelled 44.8 19 PDB header:transport protein Chain: B: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: strctural model of the p97 n domain- npl4 ubd complex 39 c2w1jB_ not modelled 42.8 26 PDB header:transferase Chain: B: PDB Molecule:putative sortase; PDBTitle: crystal structure of sortase c-1 (srtc-1) from2 streptococcus pneumoniae 40 c2dq0A_ not modelled 41.4 28 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of seryl-trna synthetase from pyrococcus2 horikoshii complexed with a seryl-adenylate analog 41 c2k8iA_ not modelled 39.8 38 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of e.coli slyd 42 c2l66B_ not modelled 39.2 17 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. 43 c3cgnA_ not modelled 38.8 22 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: crystal structure of thermophilic slyd 44 c3pr9A_ not modelled 38.7 25 PDB header:chaperone Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 45 c3shuB_ not modelled 38.3 22 PDB header:cell adhesion Chain: B: PDB Molecule:tight junction protein zo-1; PDBTitle: crystal structure of zo-1 pdz3 46 d1hxva_ not modelled 38.2 11 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 47 c1hxvA_ not modelled 38.2 11 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: ppiase domain of the mycoplasma genitalium trigger factor 48 c2kr7A_ not modelled 37.4 26 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase slyd; PDBTitle: solution structure of helicobacter pylori slyd 49 c2l55A_ not modelled 35.8 7 PDB header:metal binding protein Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans 50 d1qfja1 not modelled 32.1 20 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 51 c3g5oA_ not modelled 32.0 16 PDB header:toxin/antitoxin Chain: A: PDB Molecule:uncharacterized protein rv2865; PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis 52 c3u5cG_ not modelled 31.4 18 PDB header:ribosome Chain: G: PDB Molecule:40s ribosomal protein s6-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution 53 c3prdA_ not modelled 29.6 25 PDB header:chaperone, isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 54 d1kwaa_ not modelled 29.4 13 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 55 c2gpjA_ not modelled 29.3 17 PDB header:fad-binding protein Chain: A: PDB Molecule:siderophore-interacting protein; PDBTitle: crystal structure of a siderophore-interacting protein (sputcn32_0076)2 from shewanella putrefaciens cn-32 at 2.20 a resolution 56 d2iv2x1 not modelled 29.0 14 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 57 c2z17A_ not modelled 28.4 35 PDB header:protein binding Chain: A: PDB Molecule:pleckstrin homology sec7 and coiled-coil domains- PDBTitle: crystal sturcture of pdz domain from human pleckstrin2 homology, sec7 58 c3shwA_ not modelled 28.3 27 PDB header:cell adhesion Chain: A: PDB Molecule:tight junction protein zo-1; PDBTitle: crystal structure of zo-1 pdz3-sh3-guk supramodule complex with2 connexin-45 peptide 59 c2xznY_ not modelled 27.9 18 PDB header:ribosome Chain: Y: PDB Molecule:rps6e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 60 d1gvha2 not modelled 27.8 19 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 61 c3k1rA_ not modelled 27.5 13 PDB header:structural protein Chain: A: PDB Molecule:harmonin; PDBTitle: structure of harmonin npdz1 in complex with the sam-pbm of2 sans 62 c1e0tD_ not modelled 27.4 16 PDB header:phosphotransferase Chain: D: PDB Molecule:pyruvate kinase; PDBTitle: r292d mutant of e. coli pyruvate kinase 63 d2gp4a1 not modelled 27.3 26 Fold:The "swivelling" beta/beta/alpha domain Superfamily:LeuD/IlvD-like Family:IlvD/EDD C-terminal domain-like 64 c2eehA_ not modelled 27.2 24 PDB header:metal binding protein Chain: A: PDB Molecule:pdz domain-containing protein 7; PDBTitle: solution structure of first pdz domain of pdz domain2 containing protein 7 65 d1pina2 not modelled 26.9 18 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 66 c3lssA_ not modelled 26.6 7 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: trypanosoma brucei seryl-trna synthetase in complex with atp 67 d1dm9a_ not modelled 26.2 23 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Heat shock protein 15 kD 68 c1dm9A_ not modelled 26.2 23 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka PDBTitle: heat shock protein 15 kd 69 d1ix5a_ not modelled 26.1 33 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 70 d2jioa1 not modelled 26.0 16 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 71 c2krgA_ not modelled 24.5 11 PDB header:signaling protein Chain: A: PDB Molecule:na(+)/h(+) exchange regulatory cofactor nhe-rf1; PDBTitle: solution structure of human sodium/ hydrogen exchange2 regulatory factor 1(150-358) 72 c1w9qB_ not modelled 24.4 18 PDB header:cell adhesion Chain: B: PDB Molecule:syntenin 1; PDBTitle: crystal structure of the pdz tandem of human syntenin in2 complex with tnefaf peptide 73 d1tvca1 not modelled 24.3 17 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 74 d1vlfm1 not modelled 24.1 16 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 75 d1st6a4 not modelled 23.4 22 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 76 d1h0ha1 not modelled 22.7 19 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 77 c2gzvA_ not modelled 22.1 17 PDB header:signaling protein Chain: A: PDB Molecule:prkca-binding protein; PDBTitle: the cystal structure of the pdz domain of human pick1 (casp target) 78 d1ep3b1 not modelled 21.7 20 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 79 d1nbwa1 not modelled 21.4 41 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Swiveling domain of dehydratase reactivase alpha subunit Family:Swiveling domain of dehydratase reactivase alpha subunit 80 c2ejyA_ not modelled 21.1 13 PDB header:membrane protein Chain: A: PDB Molecule:55 kda erythrocyte membrane protein; PDBTitle: solution structure of the p55 pdz t85c domain complexed2 with the glycophorin c f127c peptide 81 d1st6a3 not modelled 20.0 23 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 82 d2a6qa1 not modelled 19.5 18 Fold:YefM-like Superfamily:YefM-like Family:YefM-like 83 d1ogya1 not modelled 19.3 17 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 84 c3e0vB_ not modelled 18.5 21 PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of pyruvate kinase from leishmania mexicana in2 complex with sulphate ions 85 d2d0oa1 not modelled 18.4 50 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Swiveling domain of dehydratase reactivase alpha subunit Family:Swiveling domain of dehydratase reactivase alpha subunit 86 d1wi2a_ not modelled 18.0 24 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 87 d1gawa1 not modelled 17.9 28 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 88 d1kqfa1 not modelled 17.7 22 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 89 c2ki8A_ not modelled 17.3 21 PDB header:oxidoreductase Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase, PDBTitle: solution nmr structure of tungsten formylmethanofuran2 dehydrogenase subunit d from archaeoglobus fulgidus,3 northeast structural genomics consortium target att7 90 d2bmwa1 not modelled 17.2 25 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 91 d2f5ya1 not modelled 17.1 23 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 92 d1seta1 not modelled 17.0 22 Fold:Long alpha-hairpin Superfamily:tRNA-binding arm Family:Seryl-tRNA synthetase (SerRS) 93 d1eu1a1 not modelled 16.7 21 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 94 c2piaA_ not modelled 16.5 20 PDB header:reductase Chain: A: PDB Molecule:phthalate dioxygenase reductase; PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s] 95 d1vloa1 not modelled 16.5 20 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:Aminomethyltransferase beta-barrel domain Family:Aminomethyltransferase beta-barrel domain 96 c2gp4A_ not modelled 16.1 26 PDB header:lyase Chain: A: PDB Molecule:6-phosphogluconate dehydratase; PDBTitle: structure of [fes]cluster-free apo form of 6-phosphogluconate2 dehydratase from shewanella oneidensis 97 d1qwza_ not modelled 15.8 10 Fold:Sortase Superfamily:Sortase Family:Sortase 98 c2g16A_ not modelled 15.7 28 PDB header:luminescent protein Chain: A: PDB Molecule:green fluorescent protein; PDBTitle: structure of s65a y66s gfp variant after backbone2 fragmentation 99 c2fug4_ not modelled 15.6 12 PDB header:oxidoreductase Chain: 4: PDB Molecule:nadh-quinone oxidoreductase chain 4; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0