PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2xznY_

Fold library id	PDB Header	Molecule	Title
c2xznY_	PDB header: ribosome	Chain: Y: PDB Molecule: rps6e;	PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2

Links to external resources
Added to library: Sat Jan 22 08:45:49 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M K F N I S Y P L T G A Q K C I E I D D D K K C N I F M D K K M G Q E V E G D T L G D E F K G Y V F K I A G G N D K D G F P M K Q G V M V R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
S T T T T T
T T
T T S
T T T
S S
T T S
B B
T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G R V R L L L S E G H S C F T S R R S G F R K R K S V R G C I V G P D M R V L A L Q I V K K G V A E I D G L T T V T L P R K L G P K R A N N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
S S
S S S
S S
T T
S S
T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I K K L F G L K K E D D P I L I K K S V I R R T F K T A K G K D R T K C P K I Q R L I T P E R I L R K K V Y K A E K T Q R Y V K T N A A K E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T S
T T S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . .

Sequence E Y E K F L S E W K K Q R A A K A H A A S A P V V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	K	F	N	I	S	Y	P	L	T	G	A	Q	K	C	I	E	I	D	D	D	K	K	C	N	I	F	M	D	K	K	M	G	Q	E	V	E	G	D	T	L	G	D	E	F	K	G	Y	V	F	K	I	A	G	G	N	D	K	D	G	F	P	M	K	Q	G	V	M	V	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	T	T									S					T	T	T	T	T			T	T					T	T	S		T	T	T		S	S											T	T	S		B	B		T	T				S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	R	V	R	L	L	L	S	E	G	H	S	C	F	T	S	R	R	S	G	F	R	K	R	K	S	V	R	G	C	I	V	G	P	D	M	R	V	L	A	L	Q	I	V	K	K	G	V	A	E	I	D	G	L	T	T	V	T	L	P	R	K	L	G	P	K	R	A	N	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S								T	T		S	S				S	S	S											S	S			T	T													S	S							T											S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	K	K	L	F	G	L	K	K	E	D	D	P	I	L	I	K	K	S	V	I	R	R	T	F	K	T	A	K	G	K	D	R	T	K	C	P	K	I	Q	R	L	I	T	P	E	R	I	L	R	K	K	V	Y	K	A	E	K	T	Q	R	Y	V	K	T	N	A	A	K	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T									T	S								T	T	S										T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Sequence	E	Y	E	K	F	L	S	E	W	K	K	Q	R	A	A	K	A	H	A	A	S	A	P	V	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T					T	T	T	T