Email l.a.kelley@imperial.ac.uk Description P00452 Date Thu Jan 5 10:56:38 GMT 2012 Unique Job ID d37d29b94415048c

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3r1rB_ 100.0 100 PDB header:complex (oxidoreductase/peptide) Chain: B: PDB Molecule:ribonucleotide reductase r1 protein; PDBTitle: ribonucleotide reductase r1 protein with amppnp occupying2 the activity site from escherichia coli 2 c3hnfA_ 100.0 30 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large subunit; PDBTitle: crystal structure of human ribonucleotide reductase 1 bound to the2 effectors ttp and datp 3 c2wghA_ 100.0 30 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large PDBTitle: human ribonucleotide reductase r1 subunit (rrm1) in complex2 with datp and mg. 4 c1pemA_ 100.0 22 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase 2 alpha PDBTitle: ribonucleotide reductase protein r1e from salmonella2 typhimurium 5 c2cvuA_ 100.0 29 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large chain PDBTitle: structures of yeast ribonucleotide reductase i 6 d1rlra2 100.0 99 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:R1 subunit of ribonucleotide reductase, C-terminal domain 7 c1xjeA_ 100.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase, b12-dependent; PDBTitle: structural mechanism of allosteric substrate specificity in a2 ribonucleotide reductase: dttp-gdp complex 8 d1peqa2 100.0 25 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:R1 subunit of ribonucleotide reductase, C-terminal domain 9 d1l1la_ 100.0 15 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:B12-dependent (class II) ribonucleotide reductase 10 d1rlra1 100.0 100 Fold:R1 subunit of ribonucleotide reductase, N-terminal domain Superfamily:R1 subunit of ribonucleotide reductase, N-terminal domain Family:R1 subunit of ribonucleotide reductase, N-terminal domain 11 d1peqa1 100.0 14 Fold:R1 subunit of ribonucleotide reductase, N-terminal domain Superfamily:R1 subunit of ribonucleotide reductase, N-terminal domain Family:R1 subunit of ribonucleotide reductase, N-terminal domain 12 d1hk8a_ 95.3 13 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit 13 c1hk8A_ 95.3 13 PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp 14 d1h16a_ 86.4 19 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 15 d1qhma_ 43.8 17 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 16 c2f3oB_ 43.3 19 PDB header:unknown function Chain: B: PDB Molecule:pyruvate formate-lyase 2; PDBTitle: crystal structure of a glycyl radical enzyme from archaeoglobus2 fulgidus 17 d1r9da_ 42.8 16 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 18 d1h3ob_ 34.1 13 Fold:Histone-fold Superfamily:Histone-fold Family:TBP-associated factors, TAFs 19 d2okqa1 33.0 8 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:YbaA-like 20 d1vjfa_ 31.5 18 Fold:YbaK/ProRS associated domain Superfamily:YbaK/ProRS associated domain Family:YbaK/ProRS associated domain 21 c2okqB_ not modelled 22.8 8 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein ybaa; PDBTitle: crystal structure of unknown conserved ybaa protein from2 shigella flexneri 22 c2bjgB_ not modelled 22.6 12 PDB header:hydrolase Chain: B: PDB Molecule:choloylglycine hydrolase; PDBTitle: crystal structure of conjugated bile acid hydrolase from2 clostridium perfringens in complex with reaction products3 taurine and deoxycholate 23 c2hezB_ not modelled 20.8 14 PDB header:hydrolase Chain: B: PDB Molecule:bile salt hydrolase; PDBTitle: bifidobacterium longum bile salt hydrolase 24 d2pvaa_ not modelled 19.7 12 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Penicillin V acylase 25 d1j09a2 not modelled 19.2 14 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 26 d2ccqa1 not modelled 18.5 16 Fold:PUG domain-like Superfamily:PUG domain-like Family:PUG domain 27 c1pgjA_ not modelled 14.7 39 PDB header:oxidoreductase Chain: A: PDB Molecule:6-phosphogluconate dehydrogenase; PDBTitle: x-ray structure of 6-phosphogluconate dehydrogenase from the protozoan2 parasite t. brucei 28 c3pg6D_ not modelled 14.5 15 PDB header:ligase Chain: D: PDB Molecule:e3 ubiquitin-protein ligase dtx3l; PDBTitle: the carboxyl terminal domain of human deltex 3-like 29 d2b4va2 not modelled 13.7 44 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:RNA editing terminal uridyl transferase 2, RET2, catalytic domain 30 c2iz1C_ not modelled 13.7 28 PDB header:oxidoreductase Chain: C: PDB Molecule:6-phosphogluconate dehydrogenase, decarboxylating; PDBTitle: 6pdh complexed with pex inhibitor synchrotron data 31 d1vmha_ not modelled 12.1 13 Fold:YjbQ-like Superfamily:YjbQ-like Family:YjbQ-like 32 d1vmfa_ not modelled 12.1 16 Fold:YjbQ-like Superfamily:YjbQ-like Family:YjbQ-like 33 d1ywsa1 not modelled 12.1 21 Fold:Rubredoxin-like Superfamily:CSL zinc finger Family:CSL zinc finger 34 d1mska_ not modelled 12.1 20 Fold:Methionine synthase activation domain-like Superfamily:Methionine synthase activation domain-like Family:Methionine synthase SAM-binding domain 35 c2p4qA_ not modelled 12.0 33 PDB header:oxidoreductase Chain: A: PDB Molecule:6-phosphogluconate dehydrogenase, decarboxylating 1; PDBTitle: crystal structure analysis of gnd1 in saccharomyces cerevisiae 36 c2jr7A_ not modelled 11.6 21 PDB header:metal binding protein Chain: A: PDB Molecule:dph3 homolog; PDBTitle: solution structure of human desr1 37 d1vmja_ not modelled 11.5 26 Fold:YjbQ-like Superfamily:YjbQ-like Family:YjbQ-like 38 d1wgea1 not modelled 11.2 21 Fold:Rubredoxin-like Superfamily:CSL zinc finger Family:CSL zinc finger 39 d1avca2 not modelled 10.9 14 Fold:Annexin Superfamily:Annexin Family:Annexin 40 d1vkia_ not modelled 10.5 13 Fold:YbaK/ProRS associated domain Superfamily:YbaK/ProRS associated domain Family:YbaK/ProRS associated domain 41 c2p6hB_ not modelled 10.3 26 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of hypothetical protein ape1520 from aeropyrum2 pernix k1 42 c2xrgA_ not modelled 10.3 11 PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2) in complex with the2 ha155 boronic acid inhibitor 43 c2oqcB_ not modelled 10.3 10 PDB header:hydrolase Chain: B: PDB Molecule:penicillin v acylase; PDBTitle: crystal structure of penicillin v acylase from bacillus subtilis 44 d1xn7a_ not modelled 10.3 64 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Hypothetical protein YhgG 45 d2d0ob1 not modelled 9.6 10 Fold:Anticodon-binding domain-like Superfamily:B12-dependent dehydatase associated subunit Family:Dehydratase-reactivating factor beta subunit 46 c3rcqA_ not modelled 9.1 25 PDB header:oxidoreductase Chain: A: PDB Molecule:aspartyl/asparaginyl beta-hydroxylase; PDBTitle: crystal structure of human aspartate beta-hydroxylase isoform a 47 c2qlwA_ not modelled 8.9 20 PDB header:isomerase Chain: A: PDB Molecule:rhau; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum 48 c2qlxA_ not modelled 8.9 20 PDB header:isomerase Chain: A: PDB Molecule:l-rhamnose mutarotase; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum in complex with l-rhamnose 49 d1vpha_ not modelled 8.7 14 Fold:YjbQ-like Superfamily:YjbQ-like Family:YjbQ-like 50 c2p6cB_ not modelled 8.5 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:aq_2013 protein; PDBTitle: crystal structure of hypothetical protein aq_2013 from aquifex2 aeolicus vf5. 51 d1wiga2 not modelled 8.3 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 52 d2g5ca2 not modelled 8.3 33 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 53 c3dzbA_ not modelled 8.2 26 PDB header:biosynthetic protein Chain: A: PDB Molecule:prephenate dehydrogenase; PDBTitle: crystal structure of prephenate dehydrogenase from streptococcus2 thermophilus 54 c2xr9A_ not modelled 7.8 11 PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2) 55 d1f6da_ not modelled 7.7 18 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 56 d1x8da1 not modelled 7.5 40 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:YiiL-like 57 c1vraA_ not modelled 7.4 10 PDB header:transferase Chain: A: PDB Molecule:arginine biosynthesis bifunctional protein argj; PDBTitle: crystal structure of arginine biosynthesis bifunctional protein argj2 (10175521) from bacillus halodurans at 2.00 a resolution 58 c2g5cD_ not modelled 7.4 32 PDB header:oxidoreductase Chain: D: PDB Molecule:prephenate dehydrogenase; PDBTitle: crystal structure of prephenate dehydrogenase from aquifex aeolicus 59 d1gv2a2 not modelled 7.4 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 60 d1f0ya2 not modelled 7.3 28 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 61 c2pv7B_ not modelled 7.2 39 PDB header:isomerase, oxidoreductase Chain: B: PDB Molecule:t-protein [includes: chorismate mutase (ec 5.4.99.5) (cm) PDBTitle: crystal structure of chorismate mutase / prephenate dehydrogenase2 (tyra) (1574749) from haemophilus influenzae rd at 2.00 a resolution 62 c3sggA_ not modelled 7.1 7 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical hydrolase; PDBTitle: crystal structure of a hypothetical hydrolase (bt_2193) from2 bacteroides thetaiotaomicron vpi-5482 at 1.25 a resolution 63 c1idzA_ not modelled 7.0 24 PDB header:dna-binding protein Chain: A: PDB Molecule:mouse c-myb dna-binding domain repeat 3; PDBTitle: structure of myb transforming protein, nmr, 20 structures 64 c3kowH_ not modelled 6.9 20 PDB header:metal binding protein Chain: H: PDB Molecule:d-ornithine aminomutase s component; PDBTitle: crystal structure of ornithine 4,5 aminomutase backsoaked complex 65 c3ggpA_ not modelled 6.8 32 PDB header:oxidoreductase Chain: A: PDB Molecule:prephenate dehydrogenase; PDBTitle: crystal structure of prephenate dehydrogenase from a. aeolicus in2 complex with hydroxyphenyl propionate and nad+ 66 d1dm5a_ not modelled 6.8 19 Fold:Annexin Superfamily:Annexin Family:Annexin 67 d1at3a_ not modelled 6.7 30 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin 68 d2csba2 not modelled 6.7 21 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 69 c2wasA_ not modelled 6.6 25 PDB header:transferase Chain: A: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase; PDBTitle: structure of the fungal type i fas ppt domain 70 d1wdka3 not modelled 6.6 39 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 71 d2pgda2 not modelled 6.6 28 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 72 d1hm6a_ not modelled 6.5 18 Fold:Annexin Superfamily:Annexin Family:Annexin 73 d1nbwb_ not modelled 6.4 25 Fold:Anticodon-binding domain-like Superfamily:B12-dependent dehydatase associated subunit Family:Dehydratase-reactivating factor beta subunit 74 c2ep9A_ not modelled 6.3 33 PDB header:oxidoreductase Chain: A: PDB Molecule:l-gulonate 3-dehydrogenase; PDBTitle: crystal structure of the rabbit l-gulonate 3-dehydrogenase2 (nadh form) 75 d1chua3 not modelled 6.2 15 Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 76 c3crw1_ not modelled 6.2 16 PDB header:hydrolase Chain: 1: PDB Molecule:xpd/rad3 related dna helicase; PDBTitle: "xpd_apo" 77 d1eexb_ not modelled 6.1 22 Fold:Anticodon-binding domain-like Superfamily:B12-dependent dehydatase associated subunit Family:Diol dehydratase, beta subunit 78 d1vzva_ not modelled 5.9 30 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin 79 c2c1fA_ not modelled 5.9 22 PDB header:hydrolase Chain: A: PDB Molecule:bifunctional endo-1,4-beta-xylanase a; PDBTitle: the structure of the family 11 xylanase from neocallimastix2 patriciarum 80 d1i36a2 not modelled 5.9 28 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 81 c2h1zA_ not modelled 5.9 50 PDB header:toxin Chain: A: PDB Molecule:hybrid atracotoxin; PDBTitle: structure of a dual-target spider toxin 82 d1wo8a1 not modelled 5.8 13 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Methylglyoxal synthase, MgsA 83 d1hrti_ not modelled 5.8 40 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Leech antihemostatic proteins Family:Hirudin-like 84 c2v4iA_ not modelled 5.8 6 PDB header:transferase Chain: A: PDB Molecule:glutamate n-acetyltransferase 2 alpha chain; PDBTitle: structure of a novel n-acyl-enzyme intermediate of an n-2 terminal nucleophile (ntn) hydrolase, oat2 85 d1zeta1 not modelled 5.8 20 Fold:Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain Family:Lesion bypass DNA polymerase (Y-family), little finger domain 86 d3cuma2 not modelled 5.8 35 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 87 c2dwuA_ not modelled 5.8 15 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase isoform race1 from bacillus2 anthracis 88 d1mbja_ not modelled 5.8 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 89 c1mbjA_ not modelled 5.8 21 PDB header:dna binding protein Chain: A: PDB Molecule:myb proto-oncogene protein; PDBTitle: mouse c-myb dna-binding domain repeat 3 90 c2rpaA_ not modelled 5.8 12 PDB header:hydrolase Chain: A: PDB Molecule:katanin p60 atpase-containing subunit a1; PDBTitle: the solution structure of n-terminal domain of microtubule severing2 enzyme 91 d1sfkb_ not modelled 5.7 20 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C 92 d1uoua1 not modelled 5.7 18 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 93 c3njqB_ not modelled 5.7 30 PDB header:viral protein/inhibitor Chain: B: PDB Molecule:orf 17; PDBTitle: crystal structure of kaposi's sarcoma-associated herpesvirus protease2 in complex with dimer disruptor 94 d1m9ia2 not modelled 5.7 22 Fold:Annexin Superfamily:Annexin Family:Annexin 95 c2p6uA_ not modelled 5.7 36 PDB header:dna binding protein Chain: A: PDB Molecule:afuhel308 helicase; PDBTitle: apo structure of the hel308 superfamily 2 helicase 96 c2rafC_ not modelled 5.7 17 PDB header:oxidoreductase Chain: C: PDB Molecule:putative dinucleotide-binding oxidoreductase; PDBTitle: crystal structure of putative dinucleotide-binding2 oxidoreductase (np_786167.1) from lactobacillus plantarum3 at 1.60 a resolution 97 d1h4ga_ not modelled 5.6 17 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Xylanase/endoglucanase 11/12 98 d2pv7a2 not modelled 5.6 44 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 99 c2ysrA_ not modelled 5.6 17 PDB header:signaling protein Chain: A: PDB Molecule:dep domain-containing protein 1; PDBTitle: solution structure of the dep domain from human dep domain-2 containing protein 1