Email l.a.kelley@imperial.ac.uk Description P0AAT4 Date Thu Jan 5 11:13:46 GMT 2012 Unique Job ID c7fa664ad6996e65

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2vv5D_ 100.0 18 PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs 2 d2vv5a1 99.8 23 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Mechanosensitive channel protein MscS (YggB), middle domain 3 d2vv5a2 99.2 19 Fold:Ferredoxin-like Superfamily:Mechanosensitive channel protein MscS (YggB), C-terminal domain Family:Mechanosensitive channel protein MscS (YggB), C-terminal domain 4 d2vv5a3 98.7 14 Fold:Mechanosensitive channel protein MscS (YggB), transmembrane region Superfamily:Mechanosensitive channel protein MscS (YggB), transmembrane region Family:Mechanosensitive channel protein MscS (YggB), transmembrane region 5 d1nz9a_ 80.7 22 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 6 d1nppa2 78.9 17 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 7 d2hqha1 78.6 30 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 8 c2kvqG_ 76.8 13 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 9 c2jvvA_ 76.8 13 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 10 c2e6zA_ 74.6 13 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 11 c2zkrt_ 70.4 13 PDB header:ribosomal protein/rna Chain: T: PDB Molecule:rna expansion segment es39 part iii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 12 c2l82A_ 69.5 16 PDB header:de novo protein Chain: A: PDB Molecule:designed protein or32; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or32 13 d1t9ha1 63.1 22 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 14 c3p8bB_ 61.1 30 PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 15 d1u0la1 60.0 23 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 16 c2rcnA_ 59.5 19 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium. 17 d2gvha1 56.7 14 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like 18 c2gvhC_ 54.3 18 PDB header:hydrolase Chain: C: PDB Molecule:agr_l_2016p; PDBTitle: crystal structure of acyl-coa hydrolase (15159470) from agrobacterium2 tumefaciens at 2.65 a resolution 19 d2eyqa1 53.7 16 Fold:SH3-like barrel Superfamily:CarD-like Family:CarD-like 20 c2yv5A_ 52.5 17 PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus 21 d1whka_ not modelled 52.5 16 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 22 d1whma_ not modelled 51.6 16 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 23 d1y7ua1 not modelled 50.9 25 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like 24 c1t9hA_ not modelled 50.7 22 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: the crystal structure of yloq, a circularly permuted gtpase. 25 c3b7kA_ not modelled 50.3 25 PDB header:hydrolase Chain: A: PDB Molecule:acyl-coenzyme a thioesterase 12; PDBTitle: human acyl-coenzyme a thioesterase 12 26 d2gvha2 not modelled 45.3 19 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like 27 c1m1gB_ not modelled 44.2 18 PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1) 28 d2coya1 not modelled 43.8 28 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 29 c4a1cS_ not modelled 43.0 18 PDB header:ribosome Chain: S: PDB Molecule:rpl26; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 30 d1ylia1 not modelled 42.3 18 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like 31 d1vpma_ not modelled 41.1 32 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like 32 d2cqaa1 not modelled 38.8 28 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TIP49 domain 33 c4a2iV_ not modelled 38.8 21 PDB header:ribosome/hydrolase Chain: V: PDB Molecule:putative ribosome biogenesis gtpase rsga; PDBTitle: cryo-electron microscopy structure of the 30s subunit in complex with2 the yjeq biogenesis factor 34 d1vqot1 not modelled 38.5 32 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 35 c1u0lB_ not modelled 37.0 22 PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima 36 c2v1oF_ not modelled 35.1 11 PDB header:hydrolase Chain: F: PDB Molecule:cytosolic acyl coenzyme a thioester hydrolase; PDBTitle: crystal structure of n-terminal domain of acyl-coa2 thioesterase 7 37 d2cp6a1 not modelled 35.0 29 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 38 d2do3a1 not modelled 33.9 22 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 39 d1ppje2 not modelled 33.7 8 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 40 c3iz5Y_ not modelled 31.8 18 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l26 (l24p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 41 d1yvca1 not modelled 31.4 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TRAM domain 42 d1yeza1 not modelled 30.7 11 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TRAM domain 43 c2qq2C_ not modelled 30.0 11 PDB header:hydrolase Chain: C: PDB Molecule:cytosolic acyl coenzyme a thioester hydrolase; PDBTitle: crystal structure of c-terminal domain of human acyl-coa thioesterase2 7 44 d2coza1 not modelled 29.7 17 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 45 c2xhcA_ not modelled 29.3 22 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of thermotoga maritima n-utilization substance g2 (nusg) 46 d1bcce2 not modelled 28.6 8 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 47 c2z0wA_ not modelled 27.7 24 PDB header:protein binding Chain: A: PDB Molecule:cap-gly domain-containing linker protein 4; PDBTitle: crystal structure of the 2nd cap-gly domain in human restin-2 like protein 2 reveals a swapped-dimer 48 c3d6lA_ not modelled 27.1 23 PDB header:hydrolase Chain: A: PDB Molecule:putative hydrolase; PDBTitle: crystal structure of cj0915, a hexameric hotdog fold2 thioesterase of campylobacter jejuni 49 d2e3ha1 not modelled 26.9 33 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 50 d2cp5a1 not modelled 26.9 14 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 51 d2cp3a1 not modelled 26.7 33 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 52 c2eisA_ not modelled 26.5 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein tthb207; PDBTitle: x-ray structure of acyl-coa hydrolase-like protein, tt1379, from2 thermus thermophilus hb8 53 d2e3ia1 not modelled 26.4 14 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 54 d1whja_ not modelled 25.8 32 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 55 c2e4hA_ not modelled 24.7 30 PDB header:structural protein Chain: A: PDB Molecule:restin; PDBTitle: solution structure of cytoskeletal protein in complex with2 tubulin tail 56 d1ayia_ not modelled 24.6 24 Fold:Acyl carrier protein-like Superfamily:Colicin E immunity proteins Family:Colicin E immunity proteins 57 d2cowa1 not modelled 24.2 22 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 58 d2cp2a1 not modelled 23.8 19 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 59 d2vlqa1 not modelled 23.4 24 Fold:Acyl carrier protein-like Superfamily:Colicin E immunity proteins Family:Colicin E immunity proteins 60 c3owvA_ not modelled 23.3 15 PDB header:hydrolase Chain: A: PDB Molecule:dna-entry nuclease; PDBTitle: structural insights into catalytic and substrate binding mechanisms of2 the strategic enda nuclease from streptococcus pneumoniae 61 c2no8A_ not modelled 22.2 30 PDB header:immune system Chain: A: PDB Molecule:colicin-e2 immunity protein; PDBTitle: nmr structure analysis of the colicin immuntiy protein im2 62 d2cp0a1 not modelled 22.2 22 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 63 c3mayE_ not modelled 20.1 27 PDB header:heme-binding protein Chain: E: PDB Molecule:possible exported protein; PDBTitle: crystal structure of a secreted mycobacterium tuberculosis heme-2 binding protein 64 d1gxha_ not modelled 19.9 30 Fold:Acyl carrier protein-like Superfamily:Colicin E immunity proteins Family:Colicin E immunity proteins 65 c3lwgB_ not modelled 19.4 4 PDB header:unknown function Chain: B: PDB Molecule:hp0420 homologue; PDBTitle: crystal structure of hp0420-homologue c46a from helicobacter2 felis 66 d1njjb1 not modelled 18.8 33 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 67 d1whha_ not modelled 17.4 21 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 68 d2btva_ not modelled 17.2 26 Fold:Reovirus inner layer core protein p3 Superfamily:Reovirus inner layer core protein p3 Family:Orbivirus core 69 c2zqeA_ not modelled 16.4 35 PDB header:dna binding protein Chain: A: PDB Molecule:muts2 protein; PDBTitle: crystal structure of the smr domain of thermus thermophilus muts2 70 d2cbpa_ not modelled 16.2 25 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 71 d1i9ga_ not modelled 15.8 8 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:tRNA(1-methyladenosine) methyltransferase-like 72 d2toda1 not modelled 15.6 33 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 73 d2je6i1 not modelled 15.1 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 74 c2btvB_ not modelled 14.7 26 PDB header:virus Chain: B: PDB Molecule:protein (vp3 core protein); PDBTitle: atomic model for bluetongue virus (btv) core 75 d1y4oa1 not modelled 14.3 19 Fold:Profilin-like Superfamily:Roadblock/LC7 domain Family:Roadblock/LC7 domain 76 d2ot2a1 not modelled 13.7 20 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 77 d1sroa_ not modelled 13.7 12 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 78 c1s1iU_ not modelled 13.4 18 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l26-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 79 d1bbua1 not modelled 13.3 22 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 80 d1ws8a_ not modelled 12.6 21 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 81 d1e1oa1 not modelled 12.3 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 82 d1e32a3 not modelled 12.2 21 Fold:Cdc48 domain 2-like Superfamily:Cdc48 domain 2-like Family:Cdc48 domain 2-like 83 d2g50a1 not modelled 12.1 14 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 84 d3d3ra1 not modelled 12.1 25 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 85 d1r4va_ not modelled 11.8 23 Fold:Histone-fold Superfamily:Histone-fold Family:Bacterial histone-fold protein 86 d1g7sa1 not modelled 11.7 26 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 87 c2qlwA_ not modelled 11.6 21 PDB header:isomerase Chain: A: PDB Molecule:rhau; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum 88 c2qlxA_ not modelled 11.6 21 PDB header:isomerase Chain: A: PDB Molecule:l-rhamnose mutarotase; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum in complex with l-rhamnose 89 d1wwia1 not modelled 11.5 14 Fold:Histone-fold Superfamily:Histone-fold Family:Bacterial histone-fold protein 90 d1ubea2 not modelled 11.5 7 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 91 c2gutA_ not modelled 11.5 23 PDB header:transcription Chain: A: PDB Molecule:arc/mediator, positive cofactor 2 glutamine/q- PDBTitle: solution structure of the trans-activation domain of the2 human co-activator arc105 92 d1mo6a2 not modelled 11.5 7 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 93 c3d3rA_ not modelled 11.4 25 PDB header:chaperone Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf; PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1 94 d1d7ka1 not modelled 11.2 33 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 95 c3g7gG_ not modelled 11.1 18 PDB header:structural genomics, unknown function Chain: G: PDB Molecule:upf0311 protein ca_c3321; PDBTitle: crystal structure of the protein with unknown function from2 clostridium acetobutylicum atcc 824 96 d1g7sa2 not modelled 11.1 19 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 97 d1e0ta1 not modelled 11.1 21 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 98 d1jera_ not modelled 11.0 29 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 99 c1jerA_ not modelled 11.0 29 PDB header:electron transport Chain: A: PDB Molecule:cucumber stellacyanin; PDBTitle: cucumber stellacyanin, cu2+, ph 7.0