Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A7N1
DateThu Jan 5 11:05:58 GMT 2012
Unique Job IDc5d97e69bfb24173

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2b664_
Top template information
PDB header:ribosome
Chain: 4: PDB Molecule:50s ribosomal protein l31;
PDBTitle: 50s ribosomal subunit from a crystal structure of release factor rf1,2 trnas and mrna bound to the ribosome. this file contains the 50s3 subunit from a crystal structure of release factor rf1, trnas and4 mrna bound to the ribosome and is described in remark 400
Confidence and coverage
Confidence:100.0% Coverage: 82%
71 residues ( 82% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKPNIHPEYRTVVFHDTSVDEYFKIGSTIKTDREIELDGVTYPYVTIDVSSKSHPFYTGK
Secondary structure 



























SS confidence 



























































Disorder  ??????





















































Disorder confidence 



























































 
   .........70.........80.......
Sequence  LRTVASEGNVARFTQRFGRFVSTKKGA
Secondary structure 


SS confidence 


























Disorder 



?????







??????????
Disorder confidence 


























 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2b66 chain 4

3D model

Region: 1 - 85
Aligned: 71
Modelled: 71
Confidence: 100.0%
Identity: 32%
PDB header:ribosome
Chain: 4: PDB Molecule:50s ribosomal protein l31;
PDBTitle: 50s ribosomal subunit from a crystal structure of release factor rf1,2 trnas and mrna bound to the ribosome. this file contains the 50s3 subunit from a crystal structure of release factor rf1, trnas and4 mrna bound to the ribosome and is described in remark 400

Phyre2

PDB 1vs6 chain Z domain 1

3D model

Region: 1 - 83
Aligned: 70
Modelled: 71
Confidence: 100.0%
Identity: 46%
Fold: L28p-like
Superfamily: L28p-like
Family: Ribosomal protein L31p

Phyre2

PDB 3bbo chain 1

3D model

Region: 2 - 82
Aligned: 68
Modelled: 68
Confidence: 100.0%
Identity: 28%
PDB header:ribosome
Chain: 1: PDB Molecule:ribosomal protein l31;
PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome

Phyre2

PDB 2j01 chain 4 domain 1

3D model

Region: 1 - 63
Aligned: 49
Modelled: 63
Confidence: 99.9%
Identity: 39%
Fold: L28p-like
Superfamily: L28p-like
Family: Ribosomal protein L31p

Phyre2

PDB 2j03 chain 4

3D model

Region: 1 - 63
Aligned: 49
Modelled: 63
Confidence: 99.9%
Identity: 39%
PDB header:ribosome
Chain: 4: PDB Molecule:50s ribosomal protein l31;
PDBTitle: structure of the thermus thermophilus 70s ribosome2 complexed with mrna, trna and paromomycin (part 4 of 4).3 this file contains the 50s subunit from molecule ii.

Phyre2

PDB 3f1f chain 4

3D model

Region: 15 - 53
Aligned: 26
Modelled: 39
Confidence: 97.1%
Identity: 27%
PDB header:ribosome
Chain: 4: PDB Molecule:50s ribosomal protein l31;
PDBTitle: crystal structure of a translation termination complex2 formed with release factor rf2. this file contains the 50s3 subunit of one 70s ribosome. the entire crystal structure4 contains two 70s ribosomes as described in remark 400.

Phyre2

PDB 2wh4 chain 4

3D model

Region: 15 - 53
Aligned: 26
Modelled: 39
Confidence: 97.1%
Identity: 27%
PDB header:ribosome
Chain: 4: PDB Molecule:50s ribosomal protein l31;
PDBTitle: insights into translational termination from the structure2 of rf2 bound to the ribosome

Phyre2

PDB 2ket chain A

3D model

Region: 68 - 80
Aligned: 13
Modelled: 13
Confidence: 29.0%
Identity: 31%
PDB header:antibiotic
Chain: A: PDB Molecule:cathelicidin-6;
PDBTitle: solution structure of bmap-27

Phyre2

PDB 1x6h chain A domain 1

3D model

Region: 11 - 29
Aligned: 19
Modelled: 19
Confidence: 27.6%
Identity: 16%
Fold: beta-beta-alpha zinc fingers
Superfamily: beta-beta-alpha zinc fingers
Family: Classic zinc finger, C2H2

Phyre2

PDB 3cuc chain B

3D model

Region: 54 - 73
Aligned: 13
Modelled: 20
Confidence: 21.9%
Identity: 54%
PDB header:signaling protein
Chain: B: PDB Molecule:protein of unknown function with a fic domain;
PDBTitle: crystal structure of a fic domain containing signaling protein2 (bt_2513) from bacteroides thetaiotaomicron vpi-5482 at 2.71 a3 resolution

Phyre2

PDB 1tqz chain A domain 1

3D model

Region: 50 - 69
Aligned: 20
Modelled: 20
Confidence: 20.7%
Identity: 25%
Fold: PH domain-like barrel
Superfamily: PH domain-like
Family: Necap1 N-terminal domain-like

Phyre2

PDB 3g66 chain A

3D model

Region: 53 - 71
Aligned: 19
Modelled: 19
Confidence: 17.8%
Identity: 11%
PDB header:transferase
Chain: A: PDB Molecule:sortase c;
PDBTitle: the crystal structure of streptococcus pneumoniae sortase c2 provides novel insights into catalysis as well as pilin3 substrate specificity

Phyre2

PDB 3cng chain C

3D model

Region: 16 - 70
Aligned: 43
Modelled: 55
Confidence: 16.6%
Identity: 14%
PDB header:hydrolase
Chain: C: PDB Molecule:nudix hydrolase;
PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea

Phyre2

PDB 1eb7 chain A domain 2

3D model

Region: 50 - 61
Aligned: 12
Modelled: 12
Confidence: 16.5%
Identity: 25%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: Di-heme cytochrome c peroxidase

Phyre2

PDB 2fiy chain A domain 1

3D model

Region: 38 - 54
Aligned: 17
Modelled: 17
Confidence: 16.5%
Identity: 0%
Fold: FdhE-like
Superfamily: FdhE-like
Family: FdhE-like

Phyre2

PDB 3o0p chain A

3D model

Region: 53 - 71
Aligned: 19
Modelled: 19
Confidence: 15.3%
Identity: 11%
PDB header:transferase , hydrolase
Chain: A: PDB Molecule:sortase family protein;
PDBTitle: pilus-related sortase c of group b streptococcus

Phyre2

PDB 4a1e chain T

3D model

Region: 44 - 70
Aligned: 27
Modelled: 27
Confidence: 15.2%
Identity: 26%
PDB header:ribosome
Chain: T: PDB Molecule:rpl24;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1

Phyre2

PDB 1nml chain A domain 2

3D model

Region: 50 - 61
Aligned: 12
Modelled: 12
Confidence: 15.0%
Identity: 17%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: Di-heme cytochrome c peroxidase

Phyre2

PDB 2yiu chain E

3D model

Region: 48 - 54
Aligned: 7
Modelled: 7
Confidence: 14.7%
Identity: 43%
PDB header:oxidoreductase
Chain: E: PDB Molecule:cytochrome c1, heme protein;
PDBTitle: x-ray structure of the dimeric cytochrome bc1 complex from2 the soil bacterium paracoccus denitrificans at 2.73 angstrom resolution

Phyre2

PDB 3cwb chain Q

3D model

Region: 48 - 54
Aligned: 7
Modelled: 7
Confidence: 13.6%
Identity: 43%
PDB header:oxidoreductase
Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein;
PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d

Phyre2
1

c2b664_
2

d1vs6z1
3

c3bbo1_
4

d2j0141
5

c2j034_
6

c3f1f4_
7

c2wh44_
8

c2ketA_
9

d1x6ha1
10

c3cucB_
11

d1tqza1
12

c3g66A_
13

c3cngC_
14

d1eb7a2
15

d2fiya1
16

c3o0pA_
17

c4a1eT_
18

d1nmla2
19

c2yiuE_
20

c3cwbQ_
21



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24



25



26



27



28



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31



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49



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65



66



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71



72






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2b664_



100.0 32 PDB header:ribosome
Chain: 4: PDB Molecule:50s ribosomal protein l31;
PDBTitle: 50s ribosomal subunit from a crystal structure of release factor rf1,2 trnas and mrna bound to the ribosome. this file contains the 50s3 subunit from a crystal structure of release factor rf1, trnas and4 mrna bound to the ribosome and is described in remark 400
2d1vs6z1



100.0 46 Fold:L28p-like
Superfamily:L28p-like
Family:Ribosomal protein L31p
3c3bbo1_



100.0 28 PDB header:ribosome
Chain: 1: PDB Molecule:ribosomal protein l31;
PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome
4d2j0141



99.9 39 Fold:L28p-like
Superfamily:L28p-like
Family:Ribosomal protein L31p
5c2j034_



99.9 39 PDB header:ribosome
Chain: 4: PDB Molecule:50s ribosomal protein l31;
PDBTitle: structure of the thermus thermophilus 70s ribosome2 complexed with mrna, trna and paromomycin (part 4 of 4).3 this file contains the 50s subunit from molecule ii.
6c3f1f4_



97.1 27 PDB header:ribosome
Chain: 4: PDB Molecule:50s ribosomal protein l31;
PDBTitle: crystal structure of a translation termination complex2 formed with release factor rf2. this file contains the 50s3 subunit of one 70s ribosome. the entire crystal structure4 contains two 70s ribosomes as described in remark 400.
7c2wh44_



97.1 27 PDB header:ribosome
Chain: 4: PDB Molecule:50s ribosomal protein l31;
PDBTitle: insights into translational termination from the structure2 of rf2 bound to the ribosome
8c2ketA_



29.0 31 PDB header:antibiotic
Chain: A: PDB Molecule:cathelicidin-6;
PDBTitle: solution structure of bmap-27
9d1x6ha1



27.6 16 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
10c3cucB_



21.9 54 PDB header:signaling protein
Chain: B: PDB Molecule:protein of unknown function with a fic domain;
PDBTitle: crystal structure of a fic domain containing signaling protein2 (bt_2513) from bacteroides thetaiotaomicron vpi-5482 at 2.71 a3 resolution
11d1tqza1



20.7 25 Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Necap1 N-terminal domain-like
12c3g66A_



17.8 11 PDB header:transferase
Chain: A: PDB Molecule:sortase c;
PDBTitle: the crystal structure of streptococcus pneumoniae sortase c2 provides novel insights into catalysis as well as pilin3 substrate specificity
13c3cngC_



16.6 14 PDB header:hydrolase
Chain: C: PDB Molecule:nudix hydrolase;
PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea
14d1eb7a2



16.5 25 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c peroxidase
15d2fiya1



16.5 0 Fold:FdhE-like
Superfamily:FdhE-like
Family:FdhE-like
16c3o0pA_



15.3 11 PDB header:transferase , hydrolase
Chain: A: PDB Molecule:sortase family protein;
PDBTitle: pilus-related sortase c of group b streptococcus
17c4a1eT_



15.2 26 PDB header:ribosome
Chain: T: PDB Molecule:rpl24;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1
18d1nmla2



15.0 17 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c peroxidase
19c2yiuE_



14.7 43 PDB header:oxidoreductase
Chain: E: PDB Molecule:cytochrome c1, heme protein;
PDBTitle: x-ray structure of the dimeric cytochrome bc1 complex from2 the soil bacterium paracoccus denitrificans at 2.73 angstrom resolution
20c3cwbQ_



13.6 43 PDB header:oxidoreductase
Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein;
PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d
21c2w1jB_



not modelled 13.5 11 PDB header:transferase
Chain: B: PDB Molecule:putative sortase;
PDBTitle: crystal structure of sortase c-1 (srtc-1) from2 streptococcus pneumoniae
22c3n3vA_



not modelled 12.7 46 PDB header:transferase
Chain: A: PDB Molecule:adenosine monophosphate-protein transferase ibpa;
PDBTitle: crystal structure of ibpafic2-h3717a in complex with adenylylated2 cdc42
23c2fynH_



not modelled 12.5 29 PDB header:oxidoreductase
Chain: H: PDB Molecule:cytochrome c1;
PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex
24c1nmlA_



not modelled 12.5 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:di-haem cytochrome c peroxidase;
PDBTitle: di-haemic cytochrome c peroxidase from pseudomonas nautica 617, form2 in (ph 4.0)
25d3cx5d1



not modelled 12.5 29 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Cytochrome bc1 domain
26c2kw8A_



not modelled 11.8 16 PDB header:protein binding
Chain: A: PDB Molecule:lpxtg-site transpeptidase family protein;
PDBTitle: solution structure of bacillus anthracis sortase a (srta)2 transpeptidase
27c1p84D_



not modelled 11.6 29 PDB header:oxidoreductase
Chain: D: PDB Molecule:cytochrome c1, heme protein;
PDBTitle: hdbt inhibited yeast cytochrome bc1 complex
28d1ppjd1



not modelled 11.5 43 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Cytochrome bc1 domain
29c1zrtD_



not modelled 11.2 43 PDB header:oxidoreductase/metal transport
Chain: D: PDB Molecule:cytochrome c1;
PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound
30c3hq7A_



not modelled 10.9 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c551 peroxidase;
PDBTitle: ccpa from g. sulfurreducens, g94k/k97q/r100i variant
31c1dvbA_



not modelled 10.7 4 PDB header:electron transport
Chain: A: PDB Molecule:rubrerythrin;
PDBTitle: rubrerythrin
32c3izcZ_



not modelled 10.7 19 PDB header:ribosome
Chain: Z: PDB Molecule:60s ribosomal protein rpl24 (l24e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
33c2b9vB_



not modelled 10.6 24 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-amino acid ester hydrolase;
PDBTitle: acetobacter turbidans alpha-amino acid ester hydrolase
34d1oa8a_



not modelled 10.1 20 Fold:AXH domain
Superfamily:AXH domain
Family:AXH domain
35d1e7la1



not modelled 10.1 60 Fold:LEM/SAP HeH motif
Superfamily:Recombination endonuclease VII, C-terminal and dimerization domains
Family:Recombination endonuclease VII, C-terminal and dimerization domains
36c2keqA_



not modelled 9.7 36 PDB header:splicing
Chain: A: PDB Molecule:dna polymerase iii alpha subunit, nucleic acid
PDBTitle: solution structure of dnae intein from nostoc punctiforme
37c3iz5Z_



not modelled 9.4 22 PDB header:ribosome
Chain: Z: PDB Molecule:60s ribosomal protein l24 (l24e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
38d1mi8a_



not modelled 9.3 25 Fold:Hedgehog/intein (Hint) domain
Superfamily:Hedgehog/intein (Hint) domain
Family:Intein (protein splicing domain)
39c1zd7B_



not modelled 8.7 25 PDB header:transferase
Chain: B: PDB Molecule:dna polymerase iii alpha subunit;
PDBTitle: 1.7 angstrom crystal structure of post-splicing form of a dnae intein2 from synechocystis sp. pcc 6803
40c3mdnD_



not modelled 8.6 23 PDB header:transferase
Chain: D: PDB Molecule:glutamine aminotransferase class-ii domain protein;
PDBTitle: structure of glutamine aminotransferase class-ii domain protein2 (spo2029) from silicibacter pomeroyi
41c3rbjB_



not modelled 8.5 11 PDB header:hydrolase
Chain: B: PDB Molecule:sortase family protein;
PDBTitle: crystal structure of the lid-mutant of streptococcus agalactiae2 sortase c1
42d1iufa2



not modelled 8.3 25 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Centromere-binding
43c3eqxB_



not modelled 8.3 46 PDB header:dna binding protein
Chain: B: PDB Molecule:fic domain containing transcriptional regulator;
PDBTitle: crystal structure of a fic family protein (so_4266) from shewanella2 oneidensis at 1.6 a resolution
44c1xezA_



not modelled 7.8 32 PDB header:toxin
Chain: A: PDB Molecule:hemolysin;
PDBTitle: crystal structure of the vibrio cholerae cytolysin (hlya)2 pro-toxin with octylglucoside bound
45c2w1kB_



not modelled 7.7 22 PDB header:transferase
Chain: B: PDB Molecule:putative sortase;
PDBTitle: crystal structure of sortase c-3 (srtc-3) from2 streptococcus pneumoniae
46d1wada_



not modelled 7.7 50 Fold:Multiheme cytochromes
Superfamily:Multiheme cytochromes
Family:Cytochrome c3-like
47d1at0a_



not modelled 7.7 21 Fold:Hedgehog/intein (Hint) domain
Superfamily:Hedgehog/intein (Hint) domain
Family:Hedgehog C-terminal (Hog) autoprocessing domain
48c1iqcB_



not modelled 7.3 25 PDB header:oxidoreductase
Chain: B: PDB Molecule:di-heme peroxidase;
PDBTitle: crystal structure of di-heme peroxidase from nitrosomonas europaea
49c1mpxB_



not modelled 7.2 26 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-amino acid ester hydrolase;
PDBTitle: alpha-amino acid ester hydrolase labeled with selenomethionine
50d1am2a_



not modelled 7.1 20 Fold:Hedgehog/intein (Hint) domain
Superfamily:Hedgehog/intein (Hint) domain
Family:Intein (protein splicing domain)
51c3dd7A_



not modelled 6.8 20 PDB header:ribosome inhibitor
Chain: A: PDB Molecule:death on curing protein;
PDBTitle: structure of doch66y in complex with the c-terminal domain of phd
52d1j5ya2



not modelled 6.6 19 Fold:HPr-like
Superfamily:Putative transcriptional regulator TM1602, C-terminal domain
Family:Putative transcriptional regulator TM1602, C-terminal domain
53c1l7qA_



not modelled 6.5 29 PDB header:hydrolase
Chain: A: PDB Molecule:cocaine esterase;
PDBTitle: ser117ala mutant of bacterial cocaine esterase coce
54c2lcjA_



not modelled 6.5 20 PDB header:hydrolase
Chain: A: PDB Molecule:pab polc intein;
PDBTitle: solution nmr structure of pab polii intein
55c2xwgA_



not modelled 6.4 17 PDB header:hydrolase
Chain: A: PDB Molecule:sortase;
PDBTitle: crystal structure of sortase c-1 from actinomyces oris (formerly2 actinomyces naeslundii)
56c3ougA_



not modelled 6.4 22 PDB header:lyase
Chain: A: PDB Molecule:aspartate 1-decarboxylase;
PDBTitle: crystal structure of cleaved l-aspartate-alpha-decarboxylase from2 francisella tularensis
57c1uheA_



not modelled 6.3 22 PDB header:lyase
Chain: A: PDB Molecule:aspartate 1-decarboxylase alpha chain;
PDBTitle: crystal structure of aspartate decarboxylase, isoaspargine complex
58c2jspA_



not modelled 6.2 10 PDB header:gene regulation
Chain: A: PDB Molecule:transcriptional regulatory protein ros;
PDBTitle: the prokaryotic cys2his2 zinc finger adopts a novel fold as2 revealed by the nmr structure of a. tumefaciens ros dna3 binding domain
59c3re9A_



not modelled 6.1 11 PDB header:transferase
Chain: A: PDB Molecule:sortase-like protein;
PDBTitle: crystal structure of sortasec1 from streptococcus suis
60c2imzA_



not modelled 6.0 17 PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease pi-mtui;
PDBTitle: crystal structure of mtu reca intein splicing domain
61c3floD_



not modelled 5.9 15 PDB header:transferase
Chain: D: PDB Molecule:dna polymerase alpha catalytic subunit a;
PDBTitle: crystal structure of the carboxyl-terminal domain of yeast2 dna polymerase alpha in complex with its b subunit
62c1iufA_



not modelled 5.8 25 PDB header:dna binding protein
Chain: A: PDB Molecule:centromere abp1 protein;
PDBTitle: low resolution solution structure of the two dna-binding2 domains in schizosaccharomyces pombe abp1 protein
63c2in0A_



not modelled 5.8 20 PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease pi-mtui;
PDBTitle: crystal structure of mtu reca intein splicing domain
64c2c45F_



not modelled 5.7 13 PDB header:lyase
Chain: F: PDB Molecule:aspartate 1-decarboxylase precursor;
PDBTitle: native precursor of pyruvoyl dependent aspartate2 decarboxylase
65d1i77a_



not modelled 5.6 67 Fold:Multiheme cytochromes
Superfamily:Multiheme cytochromes
Family:Cytochrome c3-like
66c3hq2A_



not modelled 5.6 42 PDB header:hydrolase
Chain: A: PDB Molecule:bacillus subtilis m32 carboxypeptidase;
PDBTitle: bsucp crystal structure
67c2jmzA_



not modelled 5.5 30 PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein mj0781;
PDBTitle: solution structure of a klba intein precursor from2 methanococcus jannaschii
68c1v0eB_



not modelled 5.4 41 PDB header:hydrolase
Chain: B: PDB Molecule:endo-alpha-sialidase;
PDBTitle: endosialidase of bacteriophage k1f
69c3gycB_



not modelled 5.2 10 PDB header:hydrolase
Chain: B: PDB Molecule:putative glycoside hydrolase;
PDBTitle: crystal structure of putative glycoside hydrolase (yp_001304622.1)2 from parabacteroides distasonis atcc 8503 at 1.85 a resolution
70c4znfA_



not modelled 5.2 21 PDB header:zinc finger dna binding domain
Chain: A: PDB Molecule:zinc finger;
PDBTitle: high-resolution three-dimensional structure of a single2 zinc finger from a human enhancer binding protein in3 solution
71c3znfA_



not modelled 5.2 21 PDB header:zinc finger dna binding domain
Chain: A: PDB Molecule:zinc finger;
PDBTitle: high-resolution three-dimensional structure of a single2 zinc finger from a human enhancer binding protein in3 solution
72d4znfa_



not modelled 5.2 21 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0