Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP00936
DateThu Jan 5 10:57:15 GMT 2012
Unique Job IDc2bda27bc582586c

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2rffA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:putative nucleotidyltransferase;
PDBTitle: crystal structure of a putative nucleotidyltransferase2 (np_343093.1) from sulfolobus solfataricus at 1.40 a3 resolution
Confidence and coverage
Confidence: 94.5% Coverage: 7%
62 residues ( 7% of your sequence) have been modelled with 94.5% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MYLYIETLKQRLDAINQLRVDRALAAMGPAFQQVYSLLPTLLHYHHPLMPGYLDGNVPKG
Secondary structure 
SS confidence 
Disorder  ????
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  ICLYTPDETQRHYLNELELYRGMSVQDPPKGELPITGVYTMGSTSSVGQSCSSDLDIWVC
Secondary structure 
SS confidence 
Disorder 
?
?????????????
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  HQSWLDSEERQLLQRKCSLLENWAASLGVEVSFFLIDENRFRHNESGSLGGEDCGSTQHI
Secondary structure 
SS confidence 
Disorder 
????????????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  LLLDEFYRTAVRLAGKRILWNMVPCDEEEHYDDYVMTLYAQGVLTPNEWLDLGGLSSLSA
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  EEYFGASLWQLYKSIDSPYKAVLKTLLLEAYSWEYPNPRLLAKDIKQRLHDGEIVSFGLD
Secondary structure 
SS confidence 
Disorder 
??
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  PYCMMLERVTEYLTAIEDFTRLDLVRRCFYLKVCEKLSRERACVGWRRAVLSQLVSEWGW
Secondary structure 
SS confidence 
Disorder 
?
?????????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  DEARLAMLDNRANWKIDQVREAHNELLDAMMQSYRNLIRFARRNNLSVSASPQDIGVLTR
Secondary structure 
SS confidence 
Disorder 
?
????????
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  KLYAAFEALPGKVTLVNPQISPDLSEPNLTFIYVPPGRANRSGWYLYNRAPNIESIISHQ
Secondary structure 
SS confidence 
Disorder 
?
????????
???????
????????
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  PLEYNRYLNKLVAWAWFNGLLTSRTRLYIKGNGIVDLPKLQEMVADVSHHFPLRLPAPTP
Secondary structure 
SS confidence 
Disorder 
?
?
?
??
?
????
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  KALYSPCEIRHLAIIVNLEYDPTAAFRNQVVHFDFRKLDVFSFGENQNCLVGSVDLLYRN
Secondary structure 
SS confidence 
Disorder 
???????????????????
??
??
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  SWNEVRTLHFNGEQSMIEALKTILGKMHQDAAPPDSVEVFCYSQHLRGLIRTRVQQLVSE
Secondary structure 
SS confidence 
Disorder 
?
????
?
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  CIELRLSSTRQETGRFKALRVSGQTWGLFFERLNVSVQKLENAIEFYGAISHNKLHGLSV
Secondary structure 
SS confidence 
Disorder 
???
??
?
?
???????
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  QVETNHVKLPAVVDGFASEGIIQFFFEETQDENGFNIYILDESNRVEVYHHCEGSKEELV
Secondary structure 
SS confidence 
Disorder  ?
??
?
?
Disorder confidence 
 
   .........790.........800.........810.........820.........830.........840
Sequence  RDVSRFYSSSHDRFTYGSSFINFNLPQFYQIVKVDGREQVIPFRTKSIGNMPPANQDHDT
Secondary structure 
SS confidence 
Disorder 
???????
?????
???????????????????
Disorder confidence 
 
   ........
Sequence  PLLQQYFS
Secondary structure 
SS confidence 
Disorder 
???
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2rff chain A

3D model

Region: 93 - 161
Aligned: 62
Modelled: 69
Confidence: 94.5%
Identity: 21%
PDB header:transferase
Chain: A: PDB Molecule:putative nucleotidyltransferase;
PDBTitle: crystal structure of a putative nucleotidyltransferase2 (np_343093.1) from sulfolobus solfataricus at 1.40 a3 resolution

Phyre2

PDB 1ylq chain A domain 1

3D model

Region: 93 - 161
Aligned: 64
Modelled: 69
Confidence: 93.6%
Identity: 16%
Fold: Nucleotidyltransferase
Superfamily: Nucleotidyltransferase
Family: Catalytic subunit of bi-partite nucleotidyltransferase

Phyre2

PDB 1wot chain A

3D model

Region: 94 - 157
Aligned: 58
Modelled: 64
Confidence: 93.6%
Identity: 24%
Fold: Nucleotidyltransferase
Superfamily: Nucleotidyltransferase
Family: Catalytic subunit of bi-partite nucleotidyltransferase

Phyre2

PDB 1no5 chain A

3D model

Region: 93 - 138
Aligned: 46
Modelled: 46
Confidence: 93.1%
Identity: 28%
Fold: Nucleotidyltransferase
Superfamily: Nucleotidyltransferase
Family: Catalytic subunit of bi-partite nucleotidyltransferase

Phyre2

PDB 3k7d chain A

3D model

Region: 68 - 157
Aligned: 90
Modelled: 90
Confidence: 91.5%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:glutamate-ammonia-ligase adenylyltransferase;
PDBTitle: c-terminal (adenylylation) domain of e.coli glutamine synthetase2 adenylyltransferase

Phyre2

PDB 1v4a chain A

3D model

Region: 97 - 157
Aligned: 60
Modelled: 61
Confidence: 91.3%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:glutamate-ammonia-ligase adenylyltransferase;
PDBTitle: structure of the n-terminal domain of escherichia coli2 glutamine synthetase adenylyltransferase

Phyre2

PDB 1kny chain A domain 2

3D model

Region: 95 - 126
Aligned: 32
Modelled: 32
Confidence: 89.8%
Identity: 13%
Fold: Nucleotidyltransferase
Superfamily: Nucleotidyltransferase
Family: Kanamycin nucleotidyltransferase (KNTase), N-terminal domain

Phyre2

PDB 1v4a chain A domain 2

3D model

Region: 97 - 157
Aligned: 60
Modelled: 61
Confidence: 85.7%
Identity: 15%
Fold: Nucleotidyltransferase
Superfamily: Nucleotidyltransferase
Family: GlnE-like domain

Phyre2

PDB 1kny chain A

3D model

Region: 95 - 124
Aligned: 30
Modelled: 30
Confidence: 76.4%
Identity: 13%
PDB header:transferase
Chain: A: PDB Molecule:kanamycin nucleotidyltransferase;
PDBTitle: kanamycin nucleotidyltransferase

Phyre2

PDB 2q66 chain A domain 2

3D model

Region: 98 - 138
Aligned: 41
Modelled: 41
Confidence: 75.2%
Identity: 20%
Fold: Nucleotidyltransferase
Superfamily: Nucleotidyltransferase
Family: Poly(A) polymerase, PAP, N-terminal domain

Phyre2

PDB 1mzj chain A domain 2

3D model

Region: 108 - 199
Aligned: 70
Modelled: 92
Confidence: 73.1%
Identity: 23%
Fold: Thiolase-like
Superfamily: Thiolase-like
Family: Chalcone synthase-like

Phyre2

PDB 1ub7 chain A domain 2

3D model

Region: 108 - 199
Aligned: 70
Modelled: 80
Confidence: 72.6%
Identity: 17%
Fold: Thiolase-like
Superfamily: Thiolase-like
Family: Chalcone synthase-like

Phyre2

PDB 1u6e chain A domain 2

3D model

Region: 113 - 201
Aligned: 67
Modelled: 89
Confidence: 70.6%
Identity: 18%
Fold: Thiolase-like
Superfamily: Thiolase-like
Family: Chalcone synthase-like

Phyre2

PDB 1q78 chain A

3D model

Region: 98 - 130
Aligned: 33
Modelled: 33
Confidence: 70.5%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:poly(a) polymerase alpha;
PDBTitle: crystal structure of poly(a) polymerase in complex with 3'-2 datp and magnesium chloride

Phyre2

PDB 1q79 chain A domain 2

3D model

Region: 98 - 130
Aligned: 33
Modelled: 33
Confidence: 68.7%
Identity: 18%
Fold: Nucleotidyltransferase
Superfamily: Nucleotidyltransferase
Family: Poly(A) polymerase, PAP, N-terminal domain

Phyre2

PDB 1hnj chain A domain 2

3D model

Region: 113 - 201
Aligned: 67
Modelled: 89
Confidence: 66.3%
Identity: 25%
Fold: Thiolase-like
Superfamily: Thiolase-like
Family: Chalcone synthase-like

Phyre2

PDB 1cml chain A

3D model

Region: 111 - 199
Aligned: 70
Modelled: 77
Confidence: 64.7%
Identity: 14%
PDB header:transferase
Chain: A: PDB Molecule:protein (chalcone synthase);
PDBTitle: chalcone synthase from alfalfa complexed with malonyl-coa

Phyre2

PDB 1u0m chain A domain 2

3D model

Region: 111 - 201
Aligned: 72
Modelled: 91
Confidence: 63.6%
Identity: 22%
Fold: Thiolase-like
Superfamily: Thiolase-like
Family: Chalcone synthase-like

Phyre2

PDB 3c66 chain B

3D model

Region: 98 - 130
Aligned: 33
Modelled: 33
Confidence: 59.0%
Identity: 24%
PDB header:transferase
Chain: B: PDB Molecule:poly(a) polymerase;
PDBTitle: yeast poly(a) polymerase in complex with fip1 residues 80-105

Phyre2

PDB 1u0m chain A

3D model

Region: 108 - 201
Aligned: 75
Modelled: 94
Confidence: 52.2%
Identity: 21%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:putative polyketide synthase;
PDBTitle: crystal structure of 1,3,6,8-tetrahydroxynaphthalene synthase (thns)2 from streptomyces coelicolor a3(2): a bacterial type iii polyketide3 synthase (pks) provides insights into enzymatic control of reactive4 polyketide intermediates

Phyre2

PDB 1gp1 chain A

3D model

Region: 752 - 788
Aligned: 37
Modelled: 37
Confidence: 51.4%
Identity: 8%
Fold: Thioredoxin fold
Superfamily: Thioredoxin-like
Family: Glutathione peroxidase-like

Phyre2
1
c2rffA_
2
d1ylqa1
3
d1wota_
4
d1no5a_
5
c3k7dA_
6
c1v4aA_
7
d1knya2
8
d1v4aa2
9
c1knyA_
10
d2q66a2
11
d1mzja2
12
d1ub7a2
13
d1u6ea2
14
c1q78A_
15
d1q79a2
16
d1hnja2
17
c1cmlA_
18
d1u0ma2
19
c3c66B_
20
c1u0mA_
21
d1gp1a_
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2rffA_
94.5 21 PDB header:transferase
Chain: A: PDB Molecule:putative nucleotidyltransferase;
PDBTitle: crystal structure of a putative nucleotidyltransferase2 (np_343093.1) from sulfolobus solfataricus at 1.40 a3 resolution
2d1ylqa1
93.6 16 Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Catalytic subunit of bi-partite nucleotidyltransferase
3d1wota_
93.6 24 Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Catalytic subunit of bi-partite nucleotidyltransferase
4d1no5a_
93.1 28 Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Catalytic subunit of bi-partite nucleotidyltransferase
5c3k7dA_
91.5 19 PDB header:transferase
Chain: A: PDB Molecule:glutamate-ammonia-ligase adenylyltransferase;
PDBTitle: c-terminal (adenylylation) domain of e.coli glutamine synthetase2 adenylyltransferase
6c1v4aA_
91.3 15 PDB header:transferase
Chain: A: PDB Molecule:glutamate-ammonia-ligase adenylyltransferase;
PDBTitle: structure of the n-terminal domain of escherichia coli2 glutamine synthetase adenylyltransferase
7d1knya2
89.8 13 Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Kanamycin nucleotidyltransferase (KNTase), N-terminal domain
8d1v4aa2
85.7 15 Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:GlnE-like domain
9c1knyA_
76.4 13 PDB header:transferase
Chain: A: PDB Molecule:kanamycin nucleotidyltransferase;
PDBTitle: kanamycin nucleotidyltransferase
10d2q66a2
75.2 20 Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Poly(A) polymerase, PAP, N-terminal domain
11d1mzja2
73.1 23 Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Chalcone synthase-like
12d1ub7a2
72.6 17 Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Chalcone synthase-like
13d1u6ea2
70.6 18 Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Chalcone synthase-like
14c1q78A_
70.5 18 PDB header:transferase
Chain: A: PDB Molecule:poly(a) polymerase alpha;
PDBTitle: crystal structure of poly(a) polymerase in complex with 3'-2 datp and magnesium chloride
15d1q79a2
68.7 18 Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Poly(A) polymerase, PAP, N-terminal domain
16d1hnja2
66.3 25 Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Chalcone synthase-like
17c1cmlA_
64.7 14 PDB header:transferase
Chain: A: PDB Molecule:protein (chalcone synthase);
PDBTitle: chalcone synthase from alfalfa complexed with malonyl-coa
18d1u0ma2
63.6 22 Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Chalcone synthase-like
19c3c66B_
59.0 24 PDB header:transferase
Chain: B: PDB Molecule:poly(a) polymerase;
PDBTitle: yeast poly(a) polymerase in complex with fip1 residues 80-105
20c1u0mA_
52.2 21 PDB header:biosynthetic protein
Chain: A: PDB Molecule:putative polyketide synthase;
PDBTitle: crystal structure of 1,3,6,8-tetrahydroxynaphthalene synthase (thns)2 from streptomyces coelicolor a3(2): a bacterial type iii polyketide3 synthase (pks) provides insights into enzymatic control of reactive4 polyketide intermediates
21d1gp1a_
51.4 8 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
22c3u80A_
not modelled 51.1 32 PDB header:unknown function
Chain: A: PDB Molecule:3-dehydroquinate dehydratase, type ii;
PDBTitle: 1.60 angstrom resolution crystal structure of a 3-dehydroquinate2 dehydratase-like protein from bifidobacterium longum
23d1t1ra2
not modelled 50.8 46 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
24c3a5qA_
not modelled 50.1 12 PDB header:transferase
Chain: A: PDB Molecule:benzalacetone synthase;
PDBTitle: benzalacetone synthase from rheum palmatum
25c3n8kG_
not modelled 49.4 25 PDB header:lyase
Chain: G: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: type ii dehydroquinase from mycobacterium tuberculosis complexed with2 citrazinic acid
26d2f8aa1
not modelled 48.5 8 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
27c2uygF_
not modelled 48.1 29 PDB header:lyase
Chain: F: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: crystallogaphic structure of the typeii 3-dehydroquinase2 from thermus thermophilus
28d1h05a_
not modelled 44.7 23 Fold:Flavodoxin-like
Superfamily:Type II 3-dehydroquinate dehydratase
Family:Type II 3-dehydroquinate dehydratase
29d1gtza_
not modelled 42.4 21 Fold:Flavodoxin-like
Superfamily:Type II 3-dehydroquinate dehydratase
Family:Type II 3-dehydroquinate dehydratase
30c3nybA_
not modelled 41.2 27 PDB header:transferase/rna binding protein
Chain: A: PDB Molecule:poly(a) rna polymerase protein 2;
PDBTitle: structure and function of the polymerase core of tramp, a rna2 surveillance complex
31d1bi5a2
not modelled 39.0 12 Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Chalcone synthase-like
32c2r37A_
not modelled 38.5 8 PDB header:oxidoreductase
Chain: A: PDB Molecule:glutathione peroxidase 3;
PDBTitle: crystal structure of human glutathione peroxidase 3 (selenocysteine to2 glycine mutant)
33c3o6xC_
not modelled 37.8 22 PDB header:ligase
Chain: C: PDB Molecule:glutamine synthetase;
PDBTitle: crystal structure of the type iii glutamine synthetase from2 bacteroides fragilis
34c1k5hB_
not modelled 37.4 46 PDB header:oxidoreductase
Chain: B: PDB Molecule:1-deoxy-d-xylulose-5-phosphate reductoisomerase;
PDBTitle: 1-deoxy-d-xylulose-5-phosphate reductoisomerase
35c3au9A_
not modelled 36.8 46 PDB header:isomerase/isomerase inhibitor
Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: crystal structure of the quaternary complex-1 of an isomerase
36d1xhna1
not modelled 36.6 31 Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
37d1fsfa_
not modelled 34.8 22 Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:NagB-like
38d1ee0a2
not modelled 33.0 12 Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Chalcone synthase-like
39d1q0qa2
not modelled 32.4 46 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
40c2h84A_
not modelled 31.5 21 PDB header:biosynthetic protein, transferase
Chain: A: PDB Molecule:steely1;
PDBTitle: crystal structure of the c-terminal type iii polyketide synthase (pks2 iii) domain of 'steely1' (a type i/iii pks hybrid from dictyostelium)
41c3oitB_
not modelled 31.5 19 PDB header:transferase
Chain: B: PDB Molecule:os07g0271500 protein;
PDBTitle: crystal structure of curcuminoid synthase cus from oryza sativa
42c2i6hA_
not modelled 31.2 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein atu0120;
PDBTitle: structure of protein of unknown function atu0120 from agrobacterium2 tumefaciens
43d2i6ha1
not modelled 31.2 14 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Atu0120-like
44c2he3A_
not modelled 30.1 8 PDB header:oxidoreductase
Chain: A: PDB Molecule:glutathione peroxidase 2;
PDBTitle: crystal structure of the selenocysteine to cysteine mutant of human2 glutathionine peroxidase 2 (gpx2)
45c2p0uB_
not modelled 29.7 15 PDB header:transferase
Chain: B: PDB Molecule:stilbenecarboxylate synthase 2;
PDBTitle: crystal structure of marchantia polymorpha stilbenecarboxylate2 synthase 2 (stcs2)
46c3jz0B_
not modelled 28.8 18 PDB header:transferase/antibiotic
Chain: B: PDB Molecule:lincosamide nucleotidyltransferase;
PDBTitle: linb complexed with clindamycin and ampcpp
47d1uqra_
not modelled 28.6 27 Fold:Flavodoxin-like
Superfamily:Type II 3-dehydroquinate dehydratase
Family:Type II 3-dehydroquinate dehydratase
48c2obiA_
not modelled 28.2 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:phospholipid hydroperoxide glutathione
PDBTitle: crystal structure of the selenocysteine to cysteine mutant2 of human phospholipid hydroperoxide glutathione peroxidase3 (gpx4)
49c2eghA_
not modelled 27.8 46 PDB header:oxidoreductase
Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase2 complexed with a magnesium ion, nadph and fosmidomycin
50c2p5qA_
not modelled 26.7 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:glutathione peroxidase 5;
PDBTitle: crystal structure of the poplar glutathione peroxidase 5 in2 the reduced form
51d1u0ua2
not modelled 26.6 18 Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Chalcone synthase-like
52c1sz1A_
not modelled 26.3 15 PDB header:transferase/rna
Chain: A: PDB Molecule:trna nucleotidyltransferase;
PDBTitle: mechanism of cca-adding enzymes specificity revealed by crystal2 structures of ternary complexes
53c2p31B_
not modelled 26.2 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:glutathione peroxidase 7;
PDBTitle: crystal structure of human glutathione peroxidase 7
54c2x3eA_
not modelled 25.6 19 PDB header:transferase
Chain: A: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase 3;
PDBTitle: crystal structure of 3-oxoacyl-(acyl carrier protein)2 synthase iii, fabh from pseudomonas aeruginosa pao1
55c1ee0A_
not modelled 25.2 11 PDB header:transferase
Chain: A: PDB Molecule:2-pyrone synthase;
PDBTitle: 2-pyrone synthase complexed with acetoacetyl-coa
56c2jcyA_
not modelled 25.0 46 PDB header:oxidoreductase
Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: x-ray structure of mutant 1-deoxy-d-xylulose 5-phosphate2 reductoisomerase, dxr, rv2870c, from mycobacterium3 tuberculosis
57d1r0ka2
not modelled 24.9 46 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
58d1rh2a_
not modelled 24.9 31 Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Interferons/interleukin-10 (IL-10)
59d1thga_
not modelled 24.6 17 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Fungal lipases
60d1teda_
not modelled 24.6 22 Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Chalcone synthase-like
61c3cynC_
not modelled 24.2 13 PDB header:oxidoreductase
Chain: C: PDB Molecule:probable glutathione peroxidase 8;
PDBTitle: the structure of human gpx8
62c3hn6D_
not modelled 24.2 14 PDB header:isomerase
Chain: D: PDB Molecule:glucosamine-6-phosphate deaminase;
PDBTitle: crystal structure of glucosamine-6-phosphate deaminase from borrelia2 burgdorferi
63c3hczA_
not modelled 23.2 9 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:possible thiol-disulfide isomerase;
PDBTitle: the crystal structure of a domain of possible thiol-disulfide2 isomerase from cytophaga hutchinsonii atcc 33406.
64c3l76B_
not modelled 22.9 18 PDB header:transferase
Chain: B: PDB Molecule:aspartokinase;
PDBTitle: crystal structure of aspartate kinase from synechocystis
65c2kw7A_
not modelled 22.6 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved domain protein;
PDBTitle: solution nmr structure of the n-terminal domain of protein pg_03612 from p.gingivalis, northeast structural genomics consortium target3 pgr37a
66c3ng0A_
not modelled 21.8 21 PDB header:ligase
Chain: A: PDB Molecule:glutamine synthetase;
PDBTitle: crystal structure of glutamine synthetase from synechocystis sp. pcc2 6803
67c1w17A_
not modelled 21.3 13 PDB header:hydrolase
Chain: A: PDB Molecule:probable polysaccharide deacetylase pdaa;
PDBTitle: structure of bacillus subtilis pdaa, a family 42 carbohydrate esterase.
68d1xdpa1
not modelled 21.2 73 Fold:Spectrin repeat-like
Superfamily:PPK N-terminal domain-like
Family:PPK N-terminal domain-like
69d1z21a1
not modelled 21.0 47 Fold:Type III secretion system domain
Superfamily:Type III secretion system domain
Family:YopR Core
70c3fkyD_
not modelled 20.8 12 PDB header:ligase
Chain: D: PDB Molecule:glutamine synthetase;
PDBTitle: crystal structure of the glutamine synthetase gln1deltan182 from the yeast saccharomyces cerevisiae
71d1qo7a_
not modelled 20.6 23 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Epoxide hydrolase
72c1zowB_
not modelled 20.1 17 PDB header:transferase
Chain: B: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase iii;
PDBTitle: crystal structure of s. aureus fabh, beta-ketoacyl carrier protein2 synthase iii
73d2h7ca1
not modelled 20.0 17 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Acetylcholinesterase-like
74c1r0lD_
not modelled 19.9 46 PDB header:oxidoreductase
Chain: D: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: 1-deoxy-d-xylulose 5-phosphate reductoisomerase from2 zymomonas mobilis in complex with nadph
75d1ne7a_
not modelled 19.6 17 Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:NagB-like
76c3dwvB_
not modelled 19.6 8 PDB header:oxidoreductase
Chain: B: PDB Molecule:glutathione peroxidase-like protein;
PDBTitle: glutathione peroxidase-type tryparedoxin peroxidase,2 oxidized form
77c1icfB_
not modelled 19.5 63 PDB header:hydrolase
Chain: B: PDB Molecule:protein (cathepsin l: light chain);
PDBTitle: crystal structure of mhc class ii associated p41 ii fragment in2 complex with cathepsin l
78c3a14B_
not modelled 19.2 31 PDB header:oxidoreductase
Chain: B: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: crystal structure of dxr from thermotoga maritima, in complex with2 nadph
79c2djgC_
not modelled 19.0 38 PDB header:hydrolase
Chain: C: PDB Molecule:dipeptidyl-peptidase 1;
PDBTitle: re-determination of the native structure of human dipeptidyl peptidase2 i (cathepsin c)
80c3il3A_
not modelled 19.0 21 PDB header:transferase
Chain: A: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase 3;
PDBTitle: structure of haemophilus influenzae fabh
81c2v1mA_
not modelled 18.7 8 PDB header:oxidoreductase
Chain: A: PDB Molecule:glutathione peroxidase;
PDBTitle: crystal structure of schistosoma mansoni glutathione2 peroxidase
82c2qm2B_
not modelled 18.7 21 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative hopj type iii effector protein;
PDBTitle: putative hopj type iii effector protein from vibrio parahaemolyticus
83c3eytA_
not modelled 18.1 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein spoa0173;
PDBTitle: crystal structure of thioredoxin-like superfamily protein spoa0173
84c1xetD_
not modelled 18.1 14 PDB header:transferase
Chain: D: PDB Molecule:dihydropinosylvin synthase;
PDBTitle: crystal structure of stilbene synthase from pinus2 sylvestris, complexed with methylmalonyl coa
85d1qhma_
not modelled 18.0 7 Fold:PFL-like glycyl radical enzymes
Superfamily:PFL-like glycyl radical enzymes
Family:PFL-like
86d1z5ye1
not modelled 17.9 6 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
87c3pw3E_
not modelled 17.9 38 PDB header:hydrolase
Chain: E: PDB Molecule:aminopeptidase c;
PDBTitle: crystal structure of a cysteine protease (bdi_2249) from2 parabacteroides distasonis atcc 8503 at 2.23 a resolution
88d1gqoa_
not modelled 17.8 27 Fold:Flavodoxin-like
Superfamily:Type II 3-dehydroquinate dehydratase
Family:Type II 3-dehydroquinate dehydratase
89c3lwzC_
not modelled 17.7 32 PDB header:lyase
Chain: C: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: 1.65 angstrom resolution crystal structure of type ii 3-2 dehydroquinate dehydratase (aroq) from yersinia pestis
90c3se4B_
not modelled 17.3 17 PDB header:immune system receptor
Chain: B: PDB Molecule:interferon omega-1;
PDBTitle: human ifnw-ifnar ternary complex
91c3ndjA_
not modelled 17.0 15 PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: x-ray structure of a c-3'-methyltransferase in complex with s-2 adenosyl-l-homocysteine and sugar product
92c3aleB_
not modelled 16.4 17 PDB header:transferase
Chain: B: PDB Molecule:os07g0271500 protein;
PDBTitle: a type iii polyketide synthase that produces diarylheptanoid
93d1b5la_
not modelled 16.4 16 Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Interferons/interleukin-10 (IL-10)
94c2rliA_
not modelled 16.2 22 PDB header:metal transport
Chain: A: PDB Molecule:sco2 protein homolog, mitochondrial;
PDBTitle: solution structure of cu(i) human sco2
95c2d3aJ_
not modelled 16.1 18 PDB header:ligase
Chain: J: PDB Molecule:glutamine synthetase;
PDBTitle: crystal structure of the maize glutamine synthetase2 complexed with adp and methionine sulfoximine phosphate
96d1thea_
not modelled 16.1 63 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Papain-like
97c2rcnA_
not modelled 15.9 24 PDB header:hydrolase
Chain: A: PDB Molecule:probable gtpase engc;
PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium.
98d1wu3i_
not modelled 15.9 31 Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Interferons/interleukin-10 (IL-10)
99d1u0la2
not modelled 15.7 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0