Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	H	P	R	F	Q	T	A	F	A	Q	L	A	D	N	L	Q	S	A	L	E	P	I	L	A	D	K	Y	F	P	A	L	L	T	G	E	Q	V	S	S	L	K	S	A	T	G	L	D	E	D	A	L	A	F	A	L	L	P	L	A
Secondary structure
SS confidence
Disorder		?	?	?	?							?	?	?																																?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	A	C	A	R	T	P	L	S	N	F	N	V	G	A	I	A	R	G	V	S	G	T	W	Y	F	G	A	N	M	E	F	I	G	A	T	M	Q	Q	T	V	H	A	E	Q	S	A	I	S	H	A	W	L	S	G	E	K	A	L	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	I	T	V	N	Y	T	P	C	G	H	C	R	Q	F	M	N	E	L	N	S	G	L	D	L	R	I	H	L	P	G	R	E	A	H	A	L	R	D	Y	L	P	D	A	F	G	P	K	D	L	E	I	K	T	L	L	M	D	E	Q
Secondary structure
SS confidence
Disorder																																		?														?	?	?	?	?	?	?	?	?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		D	H	G	Y	A	L	T	G	D	A	L	S	Q	A	A	I	A	A	A	N	R	S	H	M	P	Y	S	K	S	P	S	G	V	A	L	E	C	K	D	G	R	I	F	S	G	S	Y	A	E	N	A	A	F	N	P	T	L	P	P	L
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Sequence		Q	G	A	L	I	L	L	N	L	K	G	Y	D	Y	P	D	I	Q	R	A	V	L	A	E	K	A	D	A	P	L	I	Q	W	D	A	T	S	A	T	L	K	A	L	G	C	H	S	I	D	R	V	L	L	A
Secondary structure
SS confidence
Disorder																																																						?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1aln chain A Region: 1 - 294 Aligned: 294 Modelled: 294 Confidence: 100.0% Identity: 100% PDB header:hydrolase Chain: A: PDB Molecule:cytidine deaminase; PDBTitle: crystal structure of cytidine deaminase complexed with 3-deazacytidine Phyre2 PDB 1aln chain A domain 1 Region: 1 - 150 Aligned: 150 Modelled: 150 Confidence: 100.0% Identity: 100% Fold: Cytidine deaminase-like Superfamily: Cytidine deaminase-like Family: Cytidine deaminase Phyre2 PDB 1aln chain A domain 2 Region: 151 - 294 Aligned: 144 Modelled: 144 Confidence: 100.0% Identity: 100% Fold: Cytidine deaminase-like Superfamily: Cytidine deaminase-like Family: Cytidine deaminase Phyre2 PDB 1r5t chain A Region: 45 - 171 Aligned: 125 Modelled: 127 Confidence: 100.0% Identity: 29% Fold: Cytidine deaminase-like Superfamily: Cytidine deaminase-like Family: Cytidine deaminase Phyre2 PDB 1uwz chain A Region: 47 - 170 Aligned: 121 Modelled: 124 Confidence: 100.0% Identity: 28% Fold: Cytidine deaminase-like Superfamily: Cytidine deaminase-like Family: Cytidine deaminase Phyre2 PDB 1mq0 chain A Region: 48 - 170 Aligned: 121 Modelled: 123 Confidence: 100.0% Identity: 31% Fold: Cytidine deaminase-like Superfamily: Cytidine deaminase-like Family: Cytidine deaminase Phyre2 PDB 2fr5 chain A domain 1 Region: 49 - 171 Aligned: 121 Modelled: 123 Confidence: 100.0% Identity: 31% Fold: Cytidine deaminase-like Superfamily: Cytidine deaminase-like Family: Cytidine deaminase Phyre2 PDB 3ijf chain X Region: 48 - 166 Aligned: 115 Modelled: 119 Confidence: 100.0% Identity: 34% PDB header:hydrolase Chain: X: PDB Molecule:cytidine deaminase; PDBTitle: crystal structure of cytidine deaminase from mycobacterium2 tuberculosis Phyre2 PDB 3dmo chain D Region: 44 - 165 Aligned: 119 Modelled: 122 Confidence: 100.0% Identity: 32% PDB header:hydrolase Chain: D: PDB Molecule:cytidine deaminase; PDBTitle: 1.6 a crystal structure of cytidine deaminase from2 burkholderia pseudomallei Phyre2 PDB 2d30 chain A domain 1 Region: 47 - 164 Aligned: 115 Modelled: 118 Confidence: 100.0% Identity: 29% Fold: Cytidine deaminase-like Superfamily: Cytidine deaminase-like Family: Cytidine deaminase Phyre2 PDB 3r2n chain C Region: 49 - 163 Aligned: 111 Modelled: 115 Confidence: 100.0% Identity: 29% PDB header:hydrolase Chain: C: PDB Molecule:cytidine deaminase; PDBTitle: crystal structure of cytidine deaminase from mycobacterium leprae Phyre2 PDB 3b8f chain B Region: 47 - 171 Aligned: 121 Modelled: 125 Confidence: 100.0% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:putative blasticidin s deaminase; PDBTitle: crystal structure of the cytidine deaminase from bacillus anthracis Phyre2 PDB 3oj6 chain C Region: 49 - 168 Aligned: 114 Modelled: 120 Confidence: 100.0% Identity: 22% PDB header:hydrolase Chain: C: PDB Molecule:blasticidin-s deaminase; PDBTitle: crystal structure of blasticidin s deaminase from coccidioides immitis Phyre2 PDB 2z3g chain A domain 1 Region: 47 - 162 Aligned: 112 Modelled: 116 Confidence: 100.0% Identity: 21% Fold: Cytidine deaminase-like Superfamily: Cytidine deaminase-like Family: Cytidine deaminase Phyre2 PDB 2hvw chain C Region: 47 - 140 Aligned: 92 Modelled: 94 Confidence: 98.4% Identity: 22% PDB header:hydrolase Chain: C: PDB Molecule:deoxycytidylate deaminase; PDBTitle: crystal structure of dcmp deaminase from streptococcus2 mutans Phyre2 PDB 2w4l chain C Region: 47 - 138 Aligned: 83 Modelled: 92 Confidence: 98.1% Identity: 27% PDB header:hydrolase Chain: C: PDB Molecule:deoxycytidylate deaminase; PDBTitle: human dcmp deaminase Phyre2 PDB 1z3a chain A domain 1 Region: 44 - 180 Aligned: 132 Modelled: 135 Confidence: 97.8% Identity: 19% Fold: Cytidine deaminase-like Superfamily: Cytidine deaminase-like Family: Deoxycytidylate deaminase-like Phyre2 PDB 1p6o chain A Region: 185 - 290 Aligned: 99 Modelled: 106 Confidence: 97.7% Identity: 16% Fold: Cytidine deaminase-like Superfamily: Cytidine deaminase-like Family: Deoxycytidylate deaminase-like Phyre2 PDB 3ocq chain A Region: 47 - 153 Aligned: 102 Modelled: 105 Confidence: 97.6% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:putative cytosine/adenosine deaminase; PDBTitle: crystal structure of trna-specific adenosine deaminase from salmonella2 enterica Phyre2 PDB 1wkq chain A Region: 184 - 292 Aligned: 104 Modelled: 109 Confidence: 97.6% Identity: 11% Fold: Cytidine deaminase-like Superfamily: Cytidine deaminase-like Family: Deoxycytidylate deaminase-like Phyre2 1 c1alnA_ 2 d1alna1 3 d1alna2 4 d1r5ta_ 5 d1uwza_ 6 d1mq0a_ 7 d2fr5a1 8 c3ijfX_ 9 c3dmoD_ 10 d2d30a1 11 c3r2nC_ 12 c3b8fB_ 13 c3oj6C_ 14 d2z3ga1 15 c2hvwC_ 16 c2w4lC_ 17 d1z3aa1 18 d1p6oa_ 19 c3ocqA_ 20 d1wkqa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1alnA_ 100.0 100 PDB header:hydrolase Chain: A: PDB Molecule:cytidine deaminase; PDBTitle: crystal structure of cytidine deaminase complexed with 3-deazacytidine 2 d1alna1 100.0 100 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase 3 d1alna2 100.0 100 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase 4 d1r5ta_ 100.0 29 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase 5 d1uwza_ 100.0 28 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase 6 d1mq0a_ 100.0 31 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase 7 d2fr5a1 100.0 31 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase 8 c3ijfX_ 100.0 34 PDB header:hydrolase Chain: X: PDB Molecule:cytidine deaminase; PDBTitle: crystal structure of cytidine deaminase from mycobacterium2 tuberculosis 9 c3dmoD_ 100.0 32 PDB header:hydrolase Chain: D: PDB Molecule:cytidine deaminase; PDBTitle: 1.6 a crystal structure of cytidine deaminase from2 burkholderia pseudomallei 10 d2d30a1 100.0 29 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase 11 c3r2nC_ 100.0 29 PDB header:hydrolase Chain: C: PDB Molecule:cytidine deaminase; PDBTitle: crystal structure of cytidine deaminase from mycobacterium leprae 12 c3b8fB_ 100.0 19 PDB header:hydrolase Chain: B: PDB Molecule:putative blasticidin s deaminase; PDBTitle: crystal structure of the cytidine deaminase from bacillus anthracis 13 c3oj6C_ 100.0 22 PDB header:hydrolase Chain: C: PDB Molecule:blasticidin-s deaminase; PDBTitle: crystal structure of blasticidin s deaminase from coccidioides immitis 14 d2z3ga1 100.0 21 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase 15 c2hvwC_ 98.4 22 PDB header:hydrolase Chain: C: PDB Molecule:deoxycytidylate deaminase; PDBTitle: crystal structure of dcmp deaminase from streptococcus2 mutans 16 c2w4lC_ 98.1 27 PDB header:hydrolase Chain: C: PDB Molecule:deoxycytidylate deaminase; PDBTitle: human dcmp deaminase 17 d1z3aa1 97.8 19 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 18 d1p6oa_ 97.7 16 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 19 c3ocqA_ 97.6 21 PDB header:hydrolase Chain: A: PDB Molecule:putative cytosine/adenosine deaminase; PDBTitle: crystal structure of trna-specific adenosine deaminase from salmonella2 enterica 20 d1wkqa_ 97.6 11 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 21 d1wwra1 not modelled 97.5 20 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 22 d2g84a1 not modelled 97.5 20 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 23 d2b3ja1 not modelled 97.5 19 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 24 d1vq2a_ not modelled 97.4 21 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 25 d2a8na1 not modelled 97.2 19 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 26 c2hxvA_ not modelled 97.1 28 PDB header:biosynthetic protein Chain: A: PDB Molecule:diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5- PDBTitle: crystal structure of a diaminohydroxyphosphoribosylaminopyrimidine2 deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil reductase (tm1828)3 from thermotoga maritima at 1.80 a resolution 27 c2nx8A_ not modelled 96.9 14 PDB header:hydrolase Chain: A: PDB Molecule:trna-specific adenosine deaminase; PDBTitle: the crystal structure of the trna-specific adenosine deaminase from2 streptococcus pyogenes 28 c2o7pA_ not modelled 96.5 23 PDB header:hydrolase, oxidoreductase Chain: A: PDB Molecule:riboflavin biosynthesis protein ribd; PDBTitle: the crystal structure of ribd from escherichia coli in complex with2 the oxidised nadp+ cofactor in the active site of the reductase3 domain 29 c2d5nB_ not modelled 95.8 30 PDB header:hydrolase, oxidoreductase Chain: B: PDB Molecule:riboflavin biosynthesis protein ribd; PDBTitle: crystal structure of a bifunctional deaminase and reductase2 involved in riboflavin biosynthesis 30 d2hxva2 not modelled 95.7 15 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 31 c3dh1D_ not modelled 95.5 13 PDB header:hydrolase Chain: D: PDB Molecule:trna-specific adenosine deaminase 2; PDBTitle: crystal structure of human trna-specific adenosine-34 deaminase2 subunit adat2 32 d2b3za2 not modelled 95.1 29 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 33 d3d37a2 not modelled 57.7 16 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 34 c2d9sA_ not modelled 45.2 26 PDB header:ligase Chain: A: PDB Molecule:cbl e3 ubiquitin protein ligase; PDBTitle: solution structure of rsgi ruh-049, a uba domain from mouse2 cdna 35 c3gv1A_ not modelled 44.3 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:disulfide interchange protein; PDBTitle: crystal structure of disulfide interchange protein from neisseria2 gonorrhoeae 36 c2do6A_ not modelled 43.1 18 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of rsgi ruh-065, a uba domain from human2 cdna 37 c2eqjA_ not modelled 40.7 29 PDB header:transcription Chain: A: PDB Molecule:metal-response element-binding transcription PDBTitle: solution structure of the tudor domain of metal-response2 element-binding transcription factor 2 38 c2jnhA_ not modelled 37.8 17 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of the uba domain from cbl-b 39 d2fug21 not modelled 28.8 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:NQO2-like 40 c3dmlA_ not modelled 28.8 17 PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the periplasmic thioredoxin soxs from2 paracoccus pantotrophus (reduced form) 41 c3g9bA_ not modelled 27.4 16 PDB header:transferase Chain: A: PDB Molecule:dolichyl-diphosphooligosaccharide-protein PDBTitle: crystal structure of reduced ost6l 42 c2hlsB_ not modelled 26.4 14 PDB header:oxidoreductase Chain: B: PDB Molecule:protein disulfide oxidoreductase; PDBTitle: the crystal structure of a protein disulfide oxidoreductase from2 aeropyrum pernix k1 43 c2r2jA_ not modelled 26.3 9 PDB header:chaperone Chain: A: PDB Molecule:thioredoxin domain-containing protein 4; PDBTitle: crystal structure of human erp44 44 c1jn9B_ not modelled 25.9 19 PDB header:hydrolase Chain: B: PDB Molecule:putative l-asparaginase; PDBTitle: structure of putative asparaginase encoded by escherichia coli ybik2 gene 45 c1t3mD_ not modelled 25.9 19 PDB header:hydrolase Chain: D: PDB Molecule:putative l-asparaginase; PDBTitle: structure of the isoaspartyl peptidase with l-asparaginase2 activity from e. coli 46 c1t3mB_ not modelled 25.9 19 PDB header:hydrolase Chain: B: PDB Molecule:putative l-asparaginase; PDBTitle: structure of the isoaspartyl peptidase with l-asparaginase2 activity from e. coli 47 c3p8dB_ not modelled 25.4 16 PDB header:protein binding Chain: B: PDB Molecule:medulloblastoma antigen mu-mb-50.72; PDBTitle: crystal structure of the second tudor domain of human phf20 (homodimer2 form) 48 d1fo5a_ not modelled 24.5 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 49 c2ju5A_ not modelled 24.0 7 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin disulfide isomerase; PDBTitle: dsbh oxidoreductase 50 c2zalB_ not modelled 23.5 19 PDB header:hydrolase Chain: B: PDB Molecule:l-asparaginase; PDBTitle: crystal structure of e. coli isoaspartyl aminopeptidase/l-asparaginase2 in complex with l-aspartate 51 c1a8yA_ not modelled 22.2 11 PDB header:calcium-binding protein Chain: A: PDB Molecule:calsequestrin; PDBTitle: crystal structure of calsequestrin from rabbit skeletal muscle2 sarcoplasmic reticulum at 2.4 a resolution 52 d1z67a1 not modelled 21.9 28 Fold:YidB-like Superfamily:YidB-like Family:YidB-like 53 c3kp8A_ not modelled 21.6 27 PDB header:oxidoreductase Chain: A: PDB Molecule:vkorc1/thioredoxin domain protein; PDBTitle: the thioredoxin-like domain of a vkor homolog from2 synechococcus sp. 54 d1zmaa1 not modelled 21.0 29 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 55 c1x5eA_ not modelled 20.7 22 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin domain containing protein 1; PDBTitle: the solution structure of the thioredoxin-like domain of2 human thioredoxin-related transmembrane protein 56 c3gwlB_ not modelled 20.3 25 PDB header:oxidoreductase Chain: B: PDB Molecule:fad-linked sulfhydryl oxidase; PDBTitle: crystal structure of asfv pb119l, a viral sulfhydryl oxidase 57 c3dxbE_ not modelled 19.7 17 PDB header:splicing, transcription Chain: E: PDB Molecule:thioredoxin n-terminally fused to puf60(uhm); PDBTitle: structure of the uhm domain of puf60 fused to thioredoxin 58 c2e5qA_ not modelled 19.5 26 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 19; PDBTitle: solution structure of the tudor domain of phd finger2 protein 19, isoform b [homo sapiens] 59 d1jr8a_ not modelled 19.3 42 Fold:Four-helical up-and-down bundle Superfamily:FAD-dependent thiol oxidase Family:FAD-dependent thiol oxidase 60 c2zalD_ not modelled 19.2 19 PDB header:hydrolase Chain: D: PDB Molecule:l-asparaginase; PDBTitle: crystal structure of e. coli isoaspartyl aminopeptidase/l-asparaginase2 in complex with l-aspartate 61 c3f8uA_ not modelled 18.1 23 PDB header:immune system/isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a3erp57; PDBTitle: tapasin/erp57 heterodimer 62 c3gwnA_ not modelled 18.0 33 PDB header:oxidoreductase Chain: A: PDB Molecule:probable fad-linked sulfhydryl oxidase r596; PDBTitle: crystal structure of the fad binding domain from mimivirus sulfhydryl2 oxidase r596 63 d1sena_ not modelled 17.7 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 64 c1senA_ not modelled 17.7 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:thioredoxin-like protein p19; PDBTitle: endoplasmic reticulum protein rp19 o95881 65 c2ppvA_ not modelled 17.2 17 PDB header:transferase Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein belonging to the upf0052 (se_0549) from2 staphylococcus epidermidis atcc 12228 at 2.00 a resolution 66 c1t3bA_ not modelled 17.1 12 PDB header:isomerase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc; PDBTitle: x-ray structure of dsbc from haemophilus influenzae 67 c2nytB_ not modelled 17.0 23 PDB header:hydrolase Chain: B: PDB Molecule:probable c->u-editing enzyme apobec-2; PDBTitle: the apobec2 crystal structure and functional implications2 for aid 68 d1y0ua_ not modelled 16.8 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ArsR-like transcriptional regulators 69 d1hyua4 not modelled 16.4 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 70 c3l9vE_ not modelled 15.5 43 PDB header:oxidoreductase Chain: E: PDB Molecule:putative thiol-disulfide isomerase or thioredoxin; PDBTitle: crystal structure of salmonella enterica serovar typhimurium srga 71 c2zakB_ not modelled 15.5 19 PDB header:hydrolase Chain: B: PDB Molecule:l-asparaginase precursor; PDBTitle: orthorhombic crystal structure of precursor e. coli isoaspartyl2 peptidase/l-asparaginase (ecaiii) with active-site t179a mutation 72 d1v58a1 not modelled 15.2 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbC/DsbG C-terminal domain-like 73 d1j9ba_ not modelled 14.8 31 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:ArsC-like 74 c2r41A_ not modelled 14.4 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the protein of unknown function from enterococcus2 faecalis 75 c1zy7A_ not modelled 14.2 31 PDB header:hydrolase Chain: A: PDB Molecule:rna-specific adenosine deaminase b1, isoform PDBTitle: crystal structure of the catalytic domain of an adenosine2 deaminase that acts on rna (hadar2) bound to inositol3 hexakisphosphate (ihp) 76 c1jzdA_ not modelled 13.9 8 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc; PDBTitle: dsbc-dsbdalpha complex 77 c3f46A_ not modelled 13.7 17 PDB header:oxidoreductase Chain: A: PDB Molecule:5,10-methenyltetrahydromethanopterin hydrogenase; PDBTitle: the crystal structure of c176a mutated [fe]-hydrogenase (hmd)2 holoenzyme from methanocaldococcus jannaschii 78 c1k2xB_ not modelled 13.7 17 PDB header:hydrolase Chain: B: PDB Molecule:putative l-asparaginase; PDBTitle: crystal structure of putative asparaginase encoded by escherichia coli2 ybik gene 79 c1jn9D_ not modelled 13.7 17 PDB header:hydrolase Chain: D: PDB Molecule:putative l-asparaginase; PDBTitle: structure of putative asparaginase encoded by escherichia coli ybik2 gene 80 c1k2xD_ not modelled 13.7 17 PDB header:hydrolase Chain: D: PDB Molecule:putative l-asparaginase; PDBTitle: crystal structure of putative asparaginase encoded by escherichia coli2 ybik gene 81 c3feuA_ not modelled 13.6 71 PDB header:oxidoreductase Chain: A: PDB Molecule:putative lipoprotein; PDBTitle: crystal structure of dsba-like thioredoxin domain vf_a0457 from vibrio2 fischeri 82 c2albA_ not modelled 13.2 27 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a3; PDBTitle: nmr structure of the n-terminal domain a of the2 glycoprotein chaperone erp57 83 c2hj3A_ not modelled 13.1 33 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfhydryl oxidase erv1p; PDBTitle: structure of the arabidopsis thaliana erv1 thiol oxidase 84 d1qjta_ not modelled 12.8 11 Fold:EF Hand-like Superfamily:EF-hand Family:Eps15 homology domain (EH domain) 85 c3idvA_ not modelled 12.7 32 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a4; PDBTitle: crystal structure of the a0a fragment of erp72 86 d1rioa_ not modelled 12.6 8 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 87 c1sjiA_ not modelled 12.5 0 PDB header:metal binding protein Chain: A: PDB Molecule:calsequestrin, cardiac muscle isoform; PDBTitle: comparing skeletal and cardiac calsequestrin structures and2 their calcium binding: a proposed mechanism for coupled3 calcium binding and protein polymerization 88 c1p4vA_ not modelled 11.8 20 PDB header:hydrolase Chain: A: PDB Molecule:n(4)-(beta-n-acetylglucosaminyl)-l-asparaginase PDBTitle: crystal structure of the glycosylasparaginase precursor2 d151n mutant with glycine 89 c3cawB_ not modelled 11.7 32 PDB header:oxidoreductase Chain: B: PDB Molecule:o-succinylbenzoate synthase; PDBTitle: crystal structure of o-succinylbenzoate synthase from2 bdellovibrio bacteriovorus liganded with mg 90 c2gezF_ not modelled 11.6 24 PDB header:hydrolase Chain: F: PDB Molecule:l-asparaginase beta subunit; PDBTitle: crystal structure of potassium-independent plant asparaginase 91 c2b5eA_ not modelled 11.4 25 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase; PDBTitle: crystal structure of yeast protein disulfide isomerase 92 c2kboA_ not modelled 11.3 23 PDB header:hydrolase Chain: A: PDB Molecule:dna dc->du-editing enzyme apobec-3g; PDBTitle: structure, interaction, and real-time monitoring of the2 enzymatic reaction of wild type apobec3g 93 c2wz9A_ not modelled 11.2 13 PDB header:protein binding Chain: A: PDB Molecule:glutaredoxin-3; PDBTitle: crystal structure of the thioredoxin domain of human txnl2 94 c1zypB_ not modelled 11.0 13 PDB header:oxidoreductase Chain: B: PDB Molecule:alkyl hydroperoxide reductase subunit f; PDBTitle: synchrotron reduced form of the n-terminal domain of2 salmonella typhimurium ahpf 95 d2hzba1 not modelled 10.9 20 Fold:CofD-like Superfamily:CofD-like Family:CofD-like 96 d1f9ma_ not modelled 10.7 9 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 97 d1oqca_ not modelled 10.5 25 Fold:Four-helical up-and-down bundle Superfamily:FAD-dependent thiol oxidase Family:FAD-dependent thiol oxidase 98 c1j08A_ not modelled 10.4 17 PDB header:isomerase Chain: A: PDB Molecule:glutaredoxin-like protein; PDBTitle: crystal structure of glutaredoxin-like protein from2 pyrococcus horikoshii 99 d1j08a1 not modelled 10.2 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0