Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	R	G	A	T	L	V	N	L	D	S	K	G	R	L	S	V	P	T	R	Y	R	E	Q	L	L	E	N	A	A	G	Q	M	V	C	T	I	D	I	Y	H	P	C	L	L	L	Y	P	L	P	E	W	E	I	I	E	Q	K	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	R	L	S	S	M	N	P	V	E	R	R	V	Q	R	L	L	L	G	H	A	S	E	C	Q	M	D	G	A	G	R	L	L	I	A	P	V	L	R	Q	H	A	G	L	T	K	E	V	M	L	V	G	Q	F	N	K	F	E	L	W
Secondary structure
SS confidence
Disorder			?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Sequence		D	E	T	T	W	H	Q	Q	V	K	E	D	I	D	A	E	Q	L	A	T	G	D	L	S	E	R	L	Q	D	L	S	L
Secondary structure
SS confidence
Disorder											?	?	?	?	?	?	?	?	?	?	?	?							?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1n0f chain F Region: 1 - 143 Aligned: 137 Modelled: 143 Confidence: 100.0% Identity: 25% PDB header:biosynthetic protein Chain: F: PDB Molecule:protein mraz; PDBTitle: crystal structure of a cell division and cell wall2 biosynthesis protein upf0040 from mycoplasma pneumoniae:3 indication of a novel fold with a possible new conserved4 sequence motif Phyre2 PDB 1n0e chain A Region: 1 - 143 Aligned: 137 Modelled: 143 Confidence: 100.0% Identity: 25% Fold: Double-split beta-barrel Superfamily: AbrB/MazE/MraZ-like Family: Hypothetical protein MraZ Phyre2 PDB 2glw chain A Region: 6 - 112 Aligned: 74 Modelled: 74 Confidence: 95.8% Identity: 18% PDB header:transcription Chain: A: PDB Molecule:92aa long hypothetical protein; PDBTitle: the solution structure of phs018 from pyrococcus horikoshii Phyre2 PDB 2w1t chain B Region: 8 - 50 Aligned: 43 Modelled: 43 Confidence: 94.4% Identity: 21% PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: crystal structure of b. subtilis spovt Phyre2 PDB 1yfb chain A domain 1 Region: 8 - 50 Aligned: 43 Modelled: 43 Confidence: 88.9% Identity: 21% Fold: Double-split beta-barrel Superfamily: AbrB/MazE/MraZ-like Family: AbrB N-terminal domain-like Phyre2 PDB 2ro5 chain B Region: 8 - 47 Aligned: 39 Modelled: 40 Confidence: 88.0% Identity: 21% PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: rdc-refined solution structure of the n-terminal dna2 recognition domain of the bacillus subtilis transition-3 state regulator spovt Phyre2 PDB 2fy9 chain A domain 1 Region: 8 - 50 Aligned: 43 Modelled: 43 Confidence: 87.6% Identity: 21% Fold: Double-split beta-barrel Superfamily: AbrB/MazE/MraZ-like Family: AbrB N-terminal domain-like Phyre2 PDB 2l66 chain B Region: 15 - 47 Aligned: 33 Modelled: 33 Confidence: 50.8% Identity: 12% PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. Phyre2 PDB 3hs2 chain H Region: 20 - 59 Aligned: 40 Modelled: 40 Confidence: 41.5% Identity: 15% PDB header:antitoxin Chain: H: PDB Molecule:prevent host death protein; PDBTitle: crystal structure of phd truncated to residue 57 in an orthorhombic2 space group Phyre2 PDB 3hry chain A Region: 20 - 58 Aligned: 39 Modelled: 39 Confidence: 41.2% Identity: 15% PDB header:antitoxin Chain: A: PDB Molecule:prevent host death protein; PDBTitle: crystal structure of phd in a trigonal space group and partially2 disordered Phyre2 PDB 3nnq chain A Region: 13 - 26 Aligned: 14 Modelled: 14 Confidence: 33.9% Identity: 21% PDB header:viral protein Chain: A: PDB Molecule:n-terminal domain of moloney murine leukemia virus PDBTitle: crystal structure of the n-terminal domain of moloney murine leukemia2 virus integrase, northeast structural genomics consortium target or3 Phyre2 PDB 2odk chain A domain 1 Region: 20 - 58 Aligned: 39 Modelled: 39 Confidence: 32.2% Identity: 18% Fold: YefM-like Superfamily: YefM-like Family: YefM-like Phyre2 PDB 2odk chain D Region: 20 - 58 Aligned: 39 Modelled: 39 Confidence: 30.3% Identity: 18% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein; PDBTitle: putative prevent-host-death protein from nitrosomonas europaea Phyre2 PDB 3qq5 chain A Region: 79 - 111 Aligned: 33 Modelled: 33 Confidence: 27.5% Identity: 21% PDB header:oxidoreductase Chain: A: PDB Molecule:small gtp-binding protein; PDBTitle: crystal structure of the [fefe]-hydrogenase maturation protein hydf Phyre2 PDB 2k2e chain A Region: 93 - 130 Aligned: 38 Modelled: 38 Confidence: 22.9% Identity: 32% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bp2786; PDBTitle: solution nmr structure of bordetella pertussis protein2 bp2786, a mth938-like domain. northeast structural3 genomics consortium target ber31 Phyre2 PDB 2c45 chain F Region: 79 - 118 Aligned: 40 Modelled: 40 Confidence: 21.8% Identity: 13% PDB header:lyase Chain: F: PDB Molecule:aspartate 1-decarboxylase precursor; PDBTitle: native precursor of pyruvoyl dependent aspartate2 decarboxylase Phyre2 PDB 1pt1 chain B Region: 79 - 118 Aligned: 40 Modelled: 40 Confidence: 21.1% Identity: 15% PDB header:lyase Chain: B: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: unprocessed pyruvoyl dependent aspartate decarboxylase with histidine2 11 mutated to alanine Phyre2 PDB 1ppy chain A Region: 79 - 118 Aligned: 40 Modelled: 40 Confidence: 19.6% Identity: 15% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Pyruvoyl dependent aspartate decarboxylase, ADC Phyre2 PDB 1wid chain A Region: 10 - 22 Aligned: 13 Modelled: 13 Confidence: 17.8% Identity: 23% Fold: DNA-binding pseudobarrel domain Superfamily: DNA-binding pseudobarrel domain Family: B3 DNA binding domain Phyre2 PDB 2zgw chain A domain 1 Region: 10 - 18 Aligned: 9 Modelled: 9 Confidence: 16.5% Identity: 44% Fold: SH3-like barrel Superfamily: C-terminal domain of transcriptional repressors Family: Biotin repressor (BirA) Phyre2 1 c1n0fF_ 2 d1n0ea_ 3 c2glwA_ 4 c2w1tB_ 5 d1yfba1 6 c2ro5B_ 7 d2fy9a1 8 c2l66B_ 9 c3hs2H_ 10 c3hryA_ 11 c3nnqA_ 12 d2odka1 13 c2odkD_ 14 c3qq5A_ 15 c2k2eA_ 16 c2c45F_ 17 c1pt1B_ 18 d1ppya_ 19 d1wida_ 20 d2zgwa1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1n0fF_ 100.0 25 PDB header:biosynthetic protein Chain: F: PDB Molecule:protein mraz; PDBTitle: crystal structure of a cell division and cell wall2 biosynthesis protein upf0040 from mycoplasma pneumoniae:3 indication of a novel fold with a possible new conserved4 sequence motif 2 d1n0ea_ 100.0 25 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Hypothetical protein MraZ 3 c2glwA_ 95.8 18 PDB header:transcription Chain: A: PDB Molecule:92aa long hypothetical protein; PDBTitle: the solution structure of phs018 from pyrococcus horikoshii 4 c2w1tB_ 94.4 21 PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: crystal structure of b. subtilis spovt 5 d1yfba1 88.9 21 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:AbrB N-terminal domain-like 6 c2ro5B_ 88.0 21 PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: rdc-refined solution structure of the n-terminal dna2 recognition domain of the bacillus subtilis transition-3 state regulator spovt 7 d2fy9a1 87.6 21 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:AbrB N-terminal domain-like 8 c2l66B_ 50.8 12 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. 9 c3hs2H_ 41.5 15 PDB header:antitoxin Chain: H: PDB Molecule:prevent host death protein; PDBTitle: crystal structure of phd truncated to residue 57 in an orthorhombic2 space group 10 c3hryA_ 41.2 15 PDB header:antitoxin Chain: A: PDB Molecule:prevent host death protein; PDBTitle: crystal structure of phd in a trigonal space group and partially2 disordered 11 c3nnqA_ 33.9 21 PDB header:viral protein Chain: A: PDB Molecule:n-terminal domain of moloney murine leukemia virus PDBTitle: crystal structure of the n-terminal domain of moloney murine leukemia2 virus integrase, northeast structural genomics consortium target or3 12 d2odka1 32.2 18 Fold:YefM-like Superfamily:YefM-like Family:YefM-like 13 c2odkD_ 30.3 18 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein; PDBTitle: putative prevent-host-death protein from nitrosomonas europaea 14 c3qq5A_ 27.5 21 PDB header:oxidoreductase Chain: A: PDB Molecule:small gtp-binding protein; PDBTitle: crystal structure of the [fefe]-hydrogenase maturation protein hydf 15 c2k2eA_ 22.9 32 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bp2786; PDBTitle: solution nmr structure of bordetella pertussis protein2 bp2786, a mth938-like domain. northeast structural3 genomics consortium target ber31 16 c2c45F_ 21.8 13 PDB header:lyase Chain: F: PDB Molecule:aspartate 1-decarboxylase precursor; PDBTitle: native precursor of pyruvoyl dependent aspartate2 decarboxylase 17 c1pt1B_ 21.1 15 PDB header:lyase Chain: B: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: unprocessed pyruvoyl dependent aspartate decarboxylase with histidine2 11 mutated to alanine 18 d1ppya_ 19.6 15 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Pyruvoyl dependent aspartate decarboxylase, ADC 19 d1wida_ 17.8 23 Fold:DNA-binding pseudobarrel domain Superfamily:DNA-binding pseudobarrel domain Family:B3 DNA binding domain 20 d2zgwa1 16.5 44 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:Biotin repressor (BirA) 21 d2a6qb1 not modelled 15.2 10 Fold:YefM-like Superfamily:YefM-like Family:YefM-like 22 d1s6la1 not modelled 15.1 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MerB N-terminal domain-like 23 c3if4C_ not modelled 15.1 33 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:integron cassette protein hfx_cass5; PDBTitle: structure from the mobile metagenome of north west arm2 sewage outfall: integron cassette protein hfx_cass5 24 c2zcpA_ not modelled 15.1 5 PDB header:transferase Chain: A: PDB Molecule:dehydrosqualene synthase; PDBTitle: crystal structure of the c(30) carotenoid dehydrosqualene2 synthase from staphylococcus aureus complexed with3 farnesyl thiopyrophosphate 25 d2q4qa1 not modelled 14.9 16 Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like 26 c2gm2A_ not modelled 14.0 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: nmr structure of xanthomonas campestris xcc1710: northeast2 structural genomics consortium target xcr35 27 d1d7qa_ not modelled 13.7 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 28 d2a6qa1 not modelled 13.5 10 Fold:YefM-like Superfamily:YefM-like Family:YefM-like 29 c2kdnA_ not modelled 13.3 13 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein pfe0790c; PDBTitle: solution structure of pfe0790c, a putative bola-like2 protein from the protozoan parasite plasmodium falciparum. 30 c3dwmA_ not modelled 13.0 35 PDB header:transferase Chain: A: PDB Molecule:9.5 kda culture filtrate antigen cfp10a; PDBTitle: crystal structure of mycobacterium tuberculosis cyso, an antigen 31 c2oqkA_ not modelled 12.2 14 PDB header:translation Chain: A: PDB Molecule:putative translation initiation factor eif-1a; PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a 32 d1lpfa2 not modelled 12.0 6 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 33 c2dgyA_ not modelled 11.9 14 PDB header:translation Chain: A: PDB Molecule:mgc11102 protein; PDBTitle: solution structure of the eukaryotic initiation factor 1a2 in mgc11102 protein 34 d2fvta1 not modelled 11.2 8 Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like 35 d1ef4a_ not modelled 11.0 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:RNA polymerase subunit RPB10 Family:RNA polymerase subunit RPB10 36 d2fi9a1 not modelled 10.3 13 Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like 37 c3errB_ not modelled 10.1 24 PDB header:ligase Chain: B: PDB Molecule:fusion protein of microtubule binding domain from PDBTitle: microtubule binding domain from mouse cytoplasmic dynein as2 a fusion with seryl-trna synthetase 38 d1m7ja1 not modelled 10.0 23 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:D-aminoacylase 39 d2b7oa1 not modelled 9.7 21 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class-II DAHP synthetase 40 c3zvkG_ not modelled 9.5 20 PDB header:antitoxin/toxin/dna Chain: G: PDB Molecule:antitoxin of toxin-antitoxin system vapb; PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter 41 c2dq3A_ not modelled 9.1 25 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of aq_298 42 d2j7ja2 not modelled 9.1 40 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 43 c2ubpC_ not modelled 8.6 16 PDB header:hydrolase Chain: C: PDB Molecule:protein (urease alpha subunit); PDBTitle: structure of native urease from bacillus pasteurii 44 d1jt8a_ not modelled 8.1 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 45 c2dq0A_ not modelled 7.9 29 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of seryl-trna synthetase from pyrococcus2 horikoshii complexed with a seryl-adenylate analog 46 d1xova1 not modelled 7.9 63 Fold:SH3-like barrel Superfamily:Prokaryotic SH3-related domain Family:Ply C-terminal domain-like 47 d1seta2 not modelled 7.9 24 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 48 d1v59a2 not modelled 7.6 10 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 49 d1s32d_ not modelled 7.5 50 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 50 c3df0C_ not modelled 7.5 23 PDB header:hydrolase Chain: C: PDB Molecule:calpastatin; PDBTitle: calcium-dependent complex between m-calpain and calpastatin 51 c1hzeB_ not modelled 7.3 11 PDB header:transferase Chain: B: PDB Molecule:riboflavin synthase alpha chain; PDBTitle: solution structure of the n-terminal domain of riboflavin synthase2 from e. coli 52 c1i18B_ not modelled 7.3 11 PDB header:transferase Chain: B: PDB Molecule:riboflavin synthase alpha chain; PDBTitle: solution structure of the n-terminal domain of riboflavin synthase2 from e. coli 53 c3h5fB_ not modelled 7.3 39 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 54 c3h5gA_ not modelled 7.3 39 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 55 c3h5gC_ not modelled 7.3 39 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 56 c3h5fA_ not modelled 7.3 39 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 57 c3h5fC_ not modelled 7.3 39 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 58 c3h5gB_ not modelled 7.3 39 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 59 d1eqzb_ not modelled 7.2 50 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 60 d1k1da1 not modelled 7.2 25 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:Hydantoinase (dihydropyrimidinase) 61 c1sryB_ not modelled 7.1 21 PDB header:ligase(synthetase) Chain: B: PDB Molecule:seryl-trna synthetase; PDBTitle: refined crystal structure of the seryl-trna synthetase from2 thermus thermophilus at 2.5 angstroms resolution 62 d1tzyb_ not modelled 6.9 50 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 63 d2p9ba1 not modelled 6.8 30 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:Imidazolonepropionase-like 64 c1e9yB_ not modelled 6.5 16 PDB header:hydrolase Chain: B: PDB Molecule:urease subunit beta; PDBTitle: crystal structure of helicobacter pylori urease in complex with2 acetohydroxamic acid 65 c3la4A_ not modelled 6.5 21 PDB header:hydrolase Chain: A: PDB Molecule:urease; PDBTitle: crystal structure of the first plant urease from jack bean (canavalia2 ensiformis) 66 d1kx5d_ not modelled 6.5 50 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 67 d1lvla2 not modelled 6.4 16 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 68 d2gv8a2 not modelled 6.4 22 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 69 d2gf6a1 not modelled 6.3 4 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like 70 d2ftwa1 not modelled 6.3 14 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:Hydantoinase (dihydropyrimidinase) 71 c3jywM_ not modelled 6.2 19 PDB header:ribosome Chain: M: PDB Molecule:60s ribosomal protein l16(a); PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 72 d1id3d_ not modelled 6.2 42 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 73 c2vlgD_ not modelled 6.2 21 PDB header:transferase Chain: D: PDB Molecule:sporulation kinase a; PDBTitle: kina pas-a domain, homodimer 74 d2nn6d2 not modelled 6.2 23 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 75 d1d6za4 not modelled 6.1 10 Fold:N domain of copper amine oxidase-like Superfamily:Copper amine oxidase, domain N Family:Copper amine oxidase, domain N 76 d1ejxc1 not modelled 5.9 16 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:alpha-Subunit of urease 77 d1vi7a2 not modelled 5.8 14 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:YigZ C-terminal domain-like 78 c2pmzN_ not modelled 5.5 19 PDB header:translation, transferase Chain: N: PDB Molecule:dna-directed rna polymerase subunit n; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 79 d2p5zx1 not modelled 5.5 23 Fold:OB-fold Superfamily:gp5 N-terminal domain-like Family:gp4 N-terminal domain-like 80 d1wjwa_ not modelled 5.5 9 Fold:TBP-like Superfamily:Phosphoglucomutase, C-terminal domain Family:Phosphoglucomutase, C-terminal domain 81 c4a1aI_ not modelled 5.4 16 PDB header:ribosome Chain: I: PDB Molecule:60s ribosomal protein l13a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. 82 d1ojta2 not modelled 5.4 8 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 83 c3ei4D_ not modelled 5.4 5 PDB header:dna binding protein Chain: D: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-hsddb2 complex

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0