Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	G	I	F	K	A	K	N	P	C	T	K	N	T	I	F	T	T	S	N	T	L	I	Y	G	G	F	M	I	S	L	N	D	F	Y	E	Q	I	C	R	K	R	R	D	L	A	Y	H	M	S	E	C	E	W	A	V	D	T	D	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	E	E	D	H	P	E	I	R	I	E	L	G	R	M	R	E	Q	F	W	S	S	E	K	I	G	T	R	V	R	L	Y	S	C	D	V	P	W	E	T	R	H	H	T	V	N	G	Q	L	E	I	K	E	E	Y	T	E	L	Y	D
Secondary structure
SS confidence
Disorder																						?			?																					?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		P	A	Q	E	C	W	K	N	L	S	S	N	L	T	K	E	T	F	L	P	L	V	I	E	P	F	S	I	N	D	I	F	K	A	H	L	M	F	A	S	I	S	F	F	W	G	K	S	I	M	S	E	N	E	N	V	A	F	K	A
Secondary structure
SS confidence
Disorder																								?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		F	H	R	A	A	E	L	F	D	K	C	I	G	M	T	W	F	N	I	S	V	C	N	Q	K	K	L	S	E	V	R	R	S	A	G	K	K	G	G	K	S	K	A	E	V	Y	H	I	I	Q	L	K	L	V	E	L	I	N	D	S
Secondary structure
SS confidence
Disorder																												?	?			?	?	?	?	?	?	?	?	?	?	?																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		V	P	N	D	G	W	K	N	K	V	V	A	V	N	E	L	I	E	P	L	W	D	F	I	Q	M	S	E	F	E	I	N	N	Q	N	K	K	Y	R	V	A	T	M	S	Q	D	A	L	V	D	T	I	L	N	Q	W	S	L	K	N
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																						?	?	?	?	?	?	?	?																						?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Sequence		E	D	V	K	Q	A	F	D	S	A	V	R	R	K	K	R	S	K
Secondary structure
SS confidence
Disorder													?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2k19 chain A Region: 218 - 240 Aligned: 23 Modelled: 23 Confidence: 29.8% Identity: 22% PDB header:antimicrobial protein Chain: A: PDB Molecule:putative piscicolin 126 immunity protein; PDBTitle: nmr solution structure of pisi Phyre2 PDB 3rru chain A Region: 179 - 239 Aligned: 57 Modelled: 61 Confidence: 27.0% Identity: 16% PDB header:signaling protein Chain: A: PDB Molecule:tom1l1 protein; PDBTitle: x-ray crystal structure of the vhs domain of human tom1-like protein,2 northeast structural genomics consortium target hr3050e Phyre2 PDB 1mhq chain A Region: 182 - 239 Aligned: 56 Modelled: 56 Confidence: 26.9% Identity: 18% Fold: alpha-alpha superhelix Superfamily: ENTH/VHS domain Family: VHS domain Phyre2 PDB 1ujk chain A Region: 182 - 239 Aligned: 56 Modelled: 58 Confidence: 26.1% Identity: 20% Fold: alpha-alpha superhelix Superfamily: ENTH/VHS domain Family: VHS domain Phyre2 PDB 1wh4 chain A Region: 229 - 312 Aligned: 66 Modelled: 69 Confidence: 24.3% Identity: 27% Fold: DEATH domain Superfamily: DEATH domain Family: DEATH domain, DD Phyre2 PDB 1dvp chain A domain 1 Region: 182 - 239 Aligned: 51 Modelled: 58 Confidence: 23.7% Identity: 8% Fold: alpha-alpha superhelix Superfamily: ENTH/VHS domain Family: VHS domain Phyre2 PDB 1iqr chain A Region: 124 - 231 Aligned: 87 Modelled: 93 Confidence: 23.7% Identity: 17% PDB header:lyase Chain: A: PDB Molecule:photolyase; PDBTitle: crystal structure of dna photolyase from thermus2 thermophilus Phyre2 PDB 1elk chain A Region: 182 - 239 Aligned: 53 Modelled: 58 Confidence: 21.4% Identity: 21% Fold: alpha-alpha superhelix Superfamily: ENTH/VHS domain Family: VHS domain Phyre2 PDB 1x5b chain A Region: 182 - 239 Aligned: 51 Modelled: 58 Confidence: 19.7% Identity: 25% PDB header:protein binding Chain: A: PDB Molecule:signal transducing adaptor molecule 2; PDBTitle: the solution structure of the vhs domain of human signal2 transducing adaptor molecule 2 Phyre2 PDB 1u3d chain A domain 1 Region: 156 - 231 Aligned: 76 Modelled: 76 Confidence: 18.6% Identity: 12% Fold: Cryptochrome/photolyase FAD-binding domain Superfamily: Cryptochrome/photolyase FAD-binding domain Family: Cryptochrome/photolyase FAD-binding domain Phyre2 PDB 1dnp chain A domain 1 Region: 156 - 231 Aligned: 76 Modelled: 76 Confidence: 18.2% Identity: 12% Fold: Cryptochrome/photolyase FAD-binding domain Superfamily: Cryptochrome/photolyase FAD-binding domain Family: Cryptochrome/photolyase FAD-binding domain Phyre2 PDB 3fef chain B Region: 218 - 246 Aligned: 28 Modelled: 29 Confidence: 17.1% Identity: 21% PDB header:hydrolase Chain: B: PDB Molecule:putative glucosidase lpld; PDBTitle: crystal structure of putative glucosidase lpld from2 bacillus subtilis Phyre2 PDB 2bvc chain A domain 2 Region: 91 - 111 Aligned: 21 Modelled: 21 Confidence: 16.4% Identity: 43% Fold: Glutamine synthetase/guanido kinase Superfamily: Glutamine synthetase/guanido kinase Family: Glutamine synthetase catalytic domain Phyre2 PDB 3lo0 chain A Region: 220 - 260 Aligned: 41 Modelled: 41 Confidence: 15.5% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:inorganic pyrophosphatase; PDBTitle: crystal structure of inorganic pyrophosphatase from2 ehrlichia chaffeensis Phyre2 PDB 3nj2 chain B Region: 221 - 273 Aligned: 48 Modelled: 53 Confidence: 15.5% Identity: 6% PDB header:unknown function Chain: B: PDB Molecule:duf269-containing protein; PDBTitle: crystal structure of cce_0566 from the cyanobacterium cyanothece2 51142, a protein associated with nitrogen fixation from the duf2693 family Phyre2 PDB 2jqe chain A Region: 30 - 38 Aligned: 9 Modelled: 9 Confidence: 15.3% Identity: 56% PDB header:signaling protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: soution structure of af54 m-domain Phyre2 PDB 2ffh chain A domain 2 Region: 30 - 38 Aligned: 9 Modelled: 9 Confidence: 15.1% Identity: 56% Fold: Signal peptide-binding domain Superfamily: Signal peptide-binding domain Family: Signal peptide-binding domain Phyre2 PDB 1qb2 chain A Region: 30 - 38 Aligned: 9 Modelled: 9 Confidence: 14.8% Identity: 56% Fold: Signal peptide-binding domain Superfamily: Signal peptide-binding domain Family: Signal peptide-binding domain Phyre2 PDB 2j4d chain A Region: 159 - 231 Aligned: 73 Modelled: 73 Confidence: 12.7% Identity: 16% PDB header:dna-binding protein Chain: A: PDB Molecule:cryptochrome dash; PDBTitle: cryptochrome 3 from arabidopsis thaliana Phyre2 PDB 3fvy chain A Region: 27 - 67 Aligned: 41 Modelled: 41 Confidence: 12.1% Identity: 24% PDB header:hydrolase Chain: A: PDB Molecule:dipeptidyl-peptidase 3; PDBTitle: crystal structure of human dipeptidyl peptidase iii Phyre2 1 c2k19A_ 2 c3rruA_ 3 d1mhqa_ 4 d1ujka_ 5 d1wh4a_ 6 d1dvpa1 7 c1iqrA_ 8 d1elka_ 9 c1x5bA_ 10 d1u3da1 11 d1dnpa1 12 c3fefB_ 13 d2bvca2 14 c3lo0A_ 15 c3nj2B_ 16 c2jqeA_ 17 d2ffha2 18 d1qb2a_ 19 c2j4dA_ 20 c3fvyA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2k19A_ 29.8 22 PDB header:antimicrobial protein Chain: A: PDB Molecule:putative piscicolin 126 immunity protein; PDBTitle: nmr solution structure of pisi 2 c3rruA_ 27.0 16 PDB header:signaling protein Chain: A: PDB Molecule:tom1l1 protein; PDBTitle: x-ray crystal structure of the vhs domain of human tom1-like protein,2 northeast structural genomics consortium target hr3050e 3 d1mhqa_ 26.9 18 Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:VHS domain 4 d1ujka_ 26.1 20 Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:VHS domain 5 d1wh4a_ 24.3 27 Fold:DEATH domain Superfamily:DEATH domain Family:DEATH domain, DD 6 d1dvpa1 23.7 8 Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:VHS domain 7 c1iqrA_ 23.7 17 PDB header:lyase Chain: A: PDB Molecule:photolyase; PDBTitle: crystal structure of dna photolyase from thermus2 thermophilus 8 d1elka_ 21.4 21 Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:VHS domain 9 c1x5bA_ 19.7 25 PDB header:protein binding Chain: A: PDB Molecule:signal transducing adaptor molecule 2; PDBTitle: the solution structure of the vhs domain of human signal2 transducing adaptor molecule 2 10 d1u3da1 18.6 12 Fold:Cryptochrome/photolyase FAD-binding domain Superfamily:Cryptochrome/photolyase FAD-binding domain Family:Cryptochrome/photolyase FAD-binding domain 11 d1dnpa1 18.2 12 Fold:Cryptochrome/photolyase FAD-binding domain Superfamily:Cryptochrome/photolyase FAD-binding domain Family:Cryptochrome/photolyase FAD-binding domain 12 c3fefB_ 17.1 21 PDB header:hydrolase Chain: B: PDB Molecule:putative glucosidase lpld; PDBTitle: crystal structure of putative glucosidase lpld from2 bacillus subtilis 13 d2bvca2 16.4 43 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:Glutamine synthetase catalytic domain 14 c3lo0A_ 15.5 20 PDB header:hydrolase Chain: A: PDB Molecule:inorganic pyrophosphatase; PDBTitle: crystal structure of inorganic pyrophosphatase from2 ehrlichia chaffeensis 15 c3nj2B_ 15.5 6 PDB header:unknown function Chain: B: PDB Molecule:duf269-containing protein; PDBTitle: crystal structure of cce_0566 from the cyanobacterium cyanothece2 51142, a protein associated with nitrogen fixation from the duf2693 family 16 c2jqeA_ 15.3 56 PDB header:signaling protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: soution structure of af54 m-domain 17 d2ffha2 15.1 56 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 18 d1qb2a_ 14.8 56 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 19 c2j4dA_ 12.7 16 PDB header:dna-binding protein Chain: A: PDB Molecule:cryptochrome dash; PDBTitle: cryptochrome 3 from arabidopsis thaliana 20 c3fvyA_ 12.1 24 PDB header:hydrolase Chain: A: PDB Molecule:dipeptidyl-peptidase 3; PDBTitle: crystal structure of human dipeptidyl peptidase iii 21 d1w7pd1 not modelled 12.1 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 22 d1v66a_ not modelled 12.1 20 Fold:LEM/SAP HeH motif Superfamily:SAP domain Family:SAP domain 23 d2ebfx1 not modelled 11.5 7 Fold:PMT central region-like Superfamily:PMT central region-like Family:PMT central region-like 24 c2gjhA_ not modelled 11.4 50 PDB header:de novo protein Chain: A: PDB Molecule:designed protein; PDBTitle: nmr structure of cfr (c-terminal fragment of2 computationally designed novel-topology protein top7) 25 c1dvpA_ not modelled 11.3 8 PDB header:transferase Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction 26 c1u3cA_ not modelled 11.1 11 PDB header:signaling protein Chain: A: PDB Molecule:cryptochrome 1 apoprotein; PDBTitle: crystal structure of the phr domain of cryptochrome 1 from2 arabidopsis thaliana 27 d1r76a_ not modelled 11.0 26 Fold:alpha/alpha toroid Superfamily:Family 10 polysaccharide lyase Family:Family 10 polysaccharide lyase 28 c1oefA_ not modelled 10.8 33 PDB header:apolipoprotein Chain: A: PDB Molecule:apolipoprotein e; PDBTitle: peptide of human apoe residues 263-286, nmr, 5 structures2 at ph 4.8, 37 degrees celsius and peptide:sds mole ratio3 of 1:90 29 d2h80a1 not modelled 10.5 22 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:Variant SAM domain 30 d2dkya1 not modelled 10.5 33 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:Variant SAM domain 31 c1dnpA_ not modelled 10.4 12 PDB header:lyase (carbon-carbon) Chain: A: PDB Molecule:dna photolyase; PDBTitle: structure of deoxyribodipyrimidine photolyase 32 d1u5tb1 not modelled 10.3 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 33 c2qqoB_ not modelled 10.1 44 PDB header:signaling protein Chain: B: PDB Molecule:neuropilin-2; PDBTitle: crystal structure of the a2b1b2 domains from human neuropilin-2 34 d1vyva2 not modelled 9.8 37 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 35 d1qzxa2 not modelled 9.3 50 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 36 d2sh1a_ not modelled 9.0 42 Fold:Defensin-like Superfamily:Defensin-like Family:Defensin 37 c3s90D_ not modelled 8.9 55 PDB header:cell adhesion Chain: D: PDB Molecule:talin-1; PDBTitle: human vinculin head domain vh1 (residues 1-252) in complex with murine2 talin (vbs33; residues 1512-1546) 38 c1htoB_ not modelled 8.6 43 PDB header:ligase Chain: B: PDB Molecule:glutamine synthetase; PDBTitle: crystallographic structure of a relaxed glutamine synthetase from2 mycobacterium tuberculosis 39 c3g7pA_ not modelled 8.4 17 PDB header:unknown function Chain: A: PDB Molecule:nitrogen fixation protein; PDBTitle: crystal structure of a nifx-associated protein of unknown function2 (afe_1514) from acidithiobacillus ferrooxidans atcc at 2.00 a3 resolution 40 d1f52a2 not modelled 8.2 33 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:Glutamine synthetase catalytic domain 41 c1s6yA_ not modelled 8.1 19 PDB header:hydrolase Chain: A: PDB Molecule:6-phospho-beta-glucosidase; PDBTitle: 2.3a crystal structure of phospho-beta-glucosidase 42 c2qqmA_ not modelled 8.1 29 PDB header:signaling protein Chain: A: PDB Molecule:neuropilin-1; PDBTitle: crystal structure of the a2b1b2 domains from human neuropilin-1 43 c2jxfA_ not modelled 8.0 27 PDB header:viral protein, membrane protein Chain: A: PDB Molecule:genome polyprotein; PDBTitle: the solution structure of hcv ns4b(40-69) 44 c1np7A_ not modelled 7.9 14 PDB header:lyase Chain: A: PDB Molecule:dna photolyase; PDBTitle: crystal structure analysis of synechocystis sp. pcc6803 cryptochrome 45 c1u8xX_ not modelled 7.8 15 PDB header:hydrolase Chain: X: PDB Molecule:maltose-6'-phosphate glucosidase; PDBTitle: crystal structure of glva from bacillus subtilis, a metal-requiring,2 nad-dependent 6-phospho-alpha-glucosidase 46 c2iunD_ not modelled 7.8 30 PDB header:viral protein Chain: D: PDB Molecule:avian adenovirus celo long fibre; PDBTitle: structure of the c-terminal head domain of the avian2 adenovirus celo long fibre (p21 crystal form) 47 c3c8zB_ not modelled 7.7 23 PDB header:ligase Chain: B: PDB Molecule:cysteinyl-trna synthetase; PDBTitle: the 1.6 a crystal structure of mshc: the rate limiting2 enzyme in the mycothiol biosynthetic pathway 48 c1fpyE_ not modelled 7.5 33 PDB header:ligase Chain: E: PDB Molecule:glutamine synthetase; PDBTitle: crystal structure of glutamine synthetase from salmonella2 typhimurium with inhibitor phosphinothricin 49 c2hfzA_ not modelled 7.4 16 PDB header:transferase Chain: A: PDB Molecule:rna-directed rna polymerase(ns5); PDBTitle: crystal structure of rna dependent rna polymerase domain2 from west nile virus 50 c1zzpA_ not modelled 7.4 11 PDB header:transferase Chain: A: PDB Molecule:proto-oncogene tyrosine-protein kinase abl1; PDBTitle: solution structure of the f-actin binding domain of bcr-2 abl/c-abl 51 c1vjtA_ not modelled 7.4 12 PDB header:hydrolase Chain: A: PDB Molecule:alpha-glucosidase; PDBTitle: crystal structure of alpha-glucosidase (tm0752) from thermotoga2 maritima at 2.50 a resolution 52 d1np7a1 not modelled 7.1 14 Fold:Cryptochrome/photolyase FAD-binding domain Superfamily:Cryptochrome/photolyase FAD-binding domain Family:Cryptochrome/photolyase FAD-binding domain 53 c2eodA_ not modelled 7.0 38 PDB header:signaling protein Chain: A: PDB Molecule:tnf receptor-associated factor 4; PDBTitle: solution structure of traf-type zinc finger domains (190-2 248) from human tnf receptor-associated factor 4 54 c3zxpC_ not modelled 6.9 15 PDB header:protein transport Chain: C: PDB Molecule:bro1 domain-containing protein brox; PDBTitle: structural and functional analyses of the bro1 domain protein brox 55 d1enwa_ not modelled 6.8 10 Fold:RuvA C-terminal domain-like Superfamily:Elongation factor TFIIS domain 2 Family:Elongation factor TFIIS domain 2 56 c3r9mA_ not modelled 6.8 15 PDB header:protein binding Chain: A: PDB Molecule:bro1 domain-containing protein brox; PDBTitle: crystal structure of the brox bro1 domain 57 c1tezB_ not modelled 6.8 11 PDB header:lyase/dna Chain: B: PDB Molecule:deoxyribodipyrimidine photolyase; PDBTitle: complex between dna and the dna photolyase from anacystis nidulans 58 c1oegA_ not modelled 6.7 37 PDB header:apolipoprotein Chain: A: PDB Molecule:apolipoprotein e; PDBTitle: peptide of human apoe residues 267-289, nmr, 5 structures2 at ph 6.0, 37 degrees celsius and peptide:sds mole ratio3 of 1:90 59 d1t3la2 not modelled 6.6 53 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 60 d1t0hb_ not modelled 6.5 47 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 61 d1vyua2 not modelled 6.5 47 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 62 d1aq0a_ not modelled 6.4 33 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 63 c3juaB_ not modelled 6.3 16 PDB header:transcription Chain: B: PDB Molecule:65 kda yes-associated protein; PDBTitle: structural basis of yap recognition by tead4 in the hippo pathway 64 c2entA_ not modelled 6.0 35 PDB header:transcription Chain: A: PDB Molecule:krueppel-like factor 15; PDBTitle: solution structure of the second c2h2-type zinc finger2 domain from human krueppel-like factor 15 65 d1bvp11 not modelled 5.9 23 Fold:A virus capsid protein alpha-helical domain Superfamily:A virus capsid protein alpha-helical domain Family:Orbivirus capsid 66 c1up6F_ not modelled 5.9 22 PDB header:hydrolase Chain: F: PDB Molecule:6-phospho-beta-glucosidase; PDBTitle: structure of the 6-phospho-beta glucosidase from thermotoga2 maritima at 2.55 angstrom resolution in the tetragonal form3 with manganese, nad+ and glucose-6-phosphate 67 d1oqva_ not modelled 5.7 31 Fold:Pili subunits Superfamily:Pili subunits Family:TcpA-like pilin 68 d2bo9b1 not modelled 5.6 17 Fold:Cystatin-like Superfamily:Cystatin/monellin Family:Latexin-like 69 c3mkqB_ not modelled 5.6 12 PDB header:transport protein Chain: B: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat 70 c2kk1A_ not modelled 5.4 21 PDB header:transferase Chain: A: PDB Molecule:tyrosine-protein kinase abl2; PDBTitle: solution structure of c-terminal domain of tyrosine-protein2 kinase abl2 from homo sapiens, northeast structural3 genomics consortium (nesg) target hr5537a 71 c3cskA_ not modelled 5.2 25 PDB header:hydrolase Chain: A: PDB Molecule:probable dipeptidyl-peptidase 3; PDBTitle: structure of dpp iii from saccharomyces cerevisiae 72 d1hn6a_ not modelled 5.2 30 Fold:Apical membrane antigen 1 Superfamily:Apical membrane antigen 1 Family:Apical membrane antigen 1 73 c2v0xB_ not modelled 5.2 21 PDB header:cell cycle Chain: B: PDB Molecule:lamina-associated polypeptide 2 isoforms PDBTitle: the dimerization domain of lap2alpha 74 c3fkyD_ not modelled 5.2 14 PDB header:ligase Chain: D: PDB Molecule:glutamine synthetase; PDBTitle: crystal structure of the glutamine synthetase gln1deltan182 from the yeast saccharomyces cerevisiae 75 c2w2uA_ not modelled 5.1 27 PDB header:hydrolase/transport Chain: A: PDB Molecule:hypothetical p60 katanin; PDBTitle: structural insight into the interaction between archaeal2 escrt-iii and aaa-atpase 76 d1czsa_ not modelled 5.0 42 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) 77 c2l5rA_ not modelled 5.0 50 PDB header:antimicrobial protein Chain: A: PDB Molecule:antimicrobial peptide alyteserin-1c; PDBTitle: conformational and membrane interactins studies of antimicrobial2 peptide alyteserin-1c

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0