Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	T	Q	K	P	T	L	E	L	L	T	C	E	G	A	Y	R	D	N	P	T	A	L	F	H	Q	L	C	G	D	R	P	A	T	L	L	L	E	S	A	D	I	D	S	K	D	D	L	K	S	L	L	L	V	D	S	A	L	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?		?				?																												?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	T	A	L	G	D	T	V	T	I	Q	A	L	S	G	N	G	E	A	L	L	A	L	L	D	N	A	L	P	A	G	V	E	S	E	Q	S	P	N	C	R	V	L	R	F	P	P	V	S	P	L	L	D	E	D	A	R	L	C	S
Secondary structure
SS confidence
Disorder																?													?		?				?	?	?	?	?	?	?							?	?	?	?		?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	S	V	F	D	A	F	R	L	L	Q	N	L	L	N	V	P	K	E	E	R	E	A	M	F	F	G	G	L	F	S	Y	D	L	V	A	G	F	E	D	L	P	Q	L	S	A	E	N	N	C	P	D	F	C	F	Y	L	A	E	T
Secondary structure
SS confidence
Disorder																		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	M	V	I	D	H	Q	K	K	S	T	R	I	Q	A	S	L	F	A	P	N	E	E	E	K	Q	R	L	T	A	R	L	N	E	L	R	Q	Q	L	T	E	A	A	P	P	L	P	V	V	S	V	P	H	M	R	C	E	C	N	Q
Secondary structure
SS confidence
Disorder																																								?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		S	D	E	E	F	G	G	V	V	R	L	L	Q	K	A	I	R	A	G	E	I	F	Q	V	V	P	S	R	R	F	S	L	P	C	P	S	P	L	A	A	Y	Y	V	L	K	K	S	N	P	S	P	Y	M	F	F	M	Q	D	N	D
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		F	T	L	F	G	A	S	P	E	S	S	L	K	Y	D	A	T	S	R	Q	I	E	I	Y	P	I	A	G	T	R	P	R	G	R	R	A	D	G	S	L	D	R	D	L	D	S	R	I	E	L	E	M	R	T	D	H	K	E	L	S
Secondary structure
SS confidence
Disorder																	?																				?	?	?	?	?	?												?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		E	H	L	M	L	V	D	L	A	R	N	D	L	A	R	I	C	T	P	G	S	R	Y	V	A	D	L	T	K	V	D	R	Y	S	Y	V	M	H	L	V	S	R	V	V	G	E	L	R	H	D	L	D	A	L	H	A	Y	R	A	C
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		M	N	M	G	T	L	S	G	A	P	K	V	R	A	M	Q	L	I	A	E	A	E	G	R	R	R	G	S	Y	G	G	A	V	G	Y	F	T	A	H	G	D	L	D	T	C	I	V	I	R	S	A	L	V	E	N	G	I	A	T	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
Sequence		Q	A	G	A	G	V	V	L	D	S	V	P	Q	S	E	A	D	E	T	R	N	K	A	R	A	V	L	R	A	I	A	T	A	H	H	A	Q	E	T	F
Secondary structure
SS confidence
Disorder																																?	?		?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1i1q chain A Region: 5 - 516 Aligned: 512 Modelled: 512 Confidence: 100.0% Identity: 90% Fold: ADC synthase Superfamily: ADC synthase Family: ADC synthase Phyre2 PDB 1i7q chain A Region: 5 - 520 Aligned: 516 Modelled: 516 Confidence: 100.0% Identity: 72% Fold: ADC synthase Superfamily: ADC synthase Family: ADC synthase Phyre2 PDB 1qdl chain A Region: 14 - 512 Aligned: 406 Modelled: 414 Confidence: 100.0% Identity: 35% Fold: ADC synthase Superfamily: ADC synthase Family: ADC synthase Phyre2 PDB 1k0g chain A Region: 1 - 513 Aligned: 415 Modelled: 429 Confidence: 100.0% Identity: 27% Fold: ADC synthase Superfamily: ADC synthase Family: ADC synthase Phyre2 PDB 2g5f chain A domain 1 Region: 11 - 510 Aligned: 425 Modelled: 435 Confidence: 100.0% Identity: 24% Fold: ADC synthase Superfamily: ADC synthase Family: ADC synthase Phyre2 PDB 2i6y chain A Region: 12 - 510 Aligned: 411 Modelled: 427 Confidence: 100.0% Identity: 23% PDB header:lyase Chain: A: PDB Molecule:anthranilate synthase component i, putative; PDBTitle: structure and mechanism of mycobacterium tuberculosis salicylate2 synthase, mbti Phyre2 PDB 2fn0 chain A domain 1 Region: 20 - 510 Aligned: 393 Modelled: 415 Confidence: 100.0% Identity: 26% Fold: ADC synthase Superfamily: ADC synthase Family: ADC synthase Phyre2 PDB 3h9m chain A Region: 16 - 511 Aligned: 384 Modelled: 392 Confidence: 100.0% Identity: 26% PDB header:lyase Chain: A: PDB Molecule:p-aminobenzoate synthetase, component i; PDBTitle: crystal structure of para-aminobenzoate synthetase,2 component i from cytophaga hutchinsonii Phyre2 PDB 3bzn chain A domain 1 Region: 2 - 511 Aligned: 405 Modelled: 430 Confidence: 100.0% Identity: 21% Fold: ADC synthase Superfamily: ADC synthase Family: ADC synthase Phyre2 PDB 3os6 chain A Region: 225 - 512 Aligned: 278 Modelled: 287 Confidence: 100.0% Identity: 27% PDB header:isomerase Chain: A: PDB Molecule:isochorismate synthase dhbc; PDBTitle: crystal structure of putative 2,3-dihydroxybenzoate-specific2 isochorismate synthase, dhbc from bacillus anthracis. Phyre2 PDB 3hwo chain B Region: 225 - 512 Aligned: 278 Modelled: 288 Confidence: 100.0% Identity: 24% PDB header:isomerase Chain: B: PDB Molecule:isochorismate synthase entc; PDBTitle: crystal structure of escherichia coli enterobactin-specific2 isochorismate synthase entc in complex with isochorismate Phyre2 PDB 3r74 chain B Region: 225 - 518 Aligned: 281 Modelled: 292 Confidence: 100.0% Identity: 25% PDB header:lyase, biosynthetic protein Chain: B: PDB Molecule:anthranilate/para-aminobenzoate synthases component i; PDBTitle: crystal structure of 2-amino-2-desoxyisochorismate synthase (adic)2 synthase phze from burkholderia lata 383 Phyre2 PDB 3gse chain A Region: 2 - 506 Aligned: 402 Modelled: 418 Confidence: 100.0% Identity: 22% PDB header:isomerase Chain: A: PDB Molecule:menaquinone-specific isochorismate synthase; PDBTitle: crystal structure of menaquinone-specific isochorismate synthase from2 yersinia pestis co92 Phyre2 PDB 3nqk chain A Region: 447 - 483 Aligned: 37 Modelled: 37 Confidence: 39.0% Identity: 24% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a structural genomics, unknown function2 (bacova_03322) from bacteroides ovatus at 2.61 a resolution Phyre2 PDB 1cvr chain A domain 1 Region: 449 - 491 Aligned: 38 Modelled: 43 Confidence: 34.7% Identity: 24% Fold: Immunoglobulin-like beta-sandwich Superfamily: E set domains Family: Gingipain R (RgpB), C-terminal domain Phyre2 PDB 2qdy chain A domain 1 Region: 344 - 400 Aligned: 43 Modelled: 57 Confidence: 27.7% Identity: 14% Fold: Nitrile hydratase alpha chain Superfamily: Nitrile hydratase alpha chain Family: Nitrile hydratase alpha chain Phyre2 PDB 1wqk chain A Region: 443 - 456 Aligned: 13 Modelled: 14 Confidence: 26.0% Identity: 54% PDB header:toxin Chain: A: PDB Molecule:toxin apetx1; PDBTitle: solution structure of apetx1, a specific peptide inhibitor2 of human ether-a-go-go-related gene potassium channels3 from the venom of the sea anemone anthopleura4 elegantissima: a new fold for an herg toxin Phyre2 PDB 1ugp chain A Region: 344 - 400 Aligned: 43 Modelled: 57 Confidence: 26.0% Identity: 28% Fold: Nitrile hydratase alpha chain Superfamily: Nitrile hydratase alpha chain Family: Nitrile hydratase alpha chain Phyre2 PDB 2gut chain A Region: 206 - 258 Aligned: 52 Modelled: 53 Confidence: 23.5% Identity: 13% PDB header:transcription Chain: A: PDB Molecule:arc/mediator, positive cofactor 2 glutamine/q- PDBTitle: solution structure of the trans-activation domain of the2 human co-activator arc105 Phyre2 PDB 1wxn chain A Region: 443 - 456 Aligned: 13 Modelled: 14 Confidence: 22.3% Identity: 46% PDB header:toxin Chain: A: PDB Molecule:toxin apetx2; PDBTitle: solution structure of apetx2, a specific peptide inhibitor2 of asic3 proton-gated channels Phyre2 1 d1i1qa_ 2 d1i7qa_ 3 d1qdla_ 4 d1k0ga_ 5 d2g5fa1 6 c2i6yA_ 7 d2fn0a1 8 c3h9mA_ 9 d3bzna1 10 c3os6A_ 11 c3hwoB_ 12 c3r74B_ 13 c3gseA_ 14 c3nqkA_ 15 d1cvra1 16 d2qdya1 17 c1wqkA_ 18 d1ugpa_ 19 c2gutA_ 20 c1wxnA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1i1qa_ 100.0 90 Fold:ADC synthase Superfamily:ADC synthase Family:ADC synthase 2 d1i7qa_ 100.0 72 Fold:ADC synthase Superfamily:ADC synthase Family:ADC synthase 3 d1qdla_ 100.0 35 Fold:ADC synthase Superfamily:ADC synthase Family:ADC synthase 4 d1k0ga_ 100.0 27 Fold:ADC synthase Superfamily:ADC synthase Family:ADC synthase 5 d2g5fa1 100.0 24 Fold:ADC synthase Superfamily:ADC synthase Family:ADC synthase 6 c2i6yA_ 100.0 23 PDB header:lyase Chain: A: PDB Molecule:anthranilate synthase component i, putative; PDBTitle: structure and mechanism of mycobacterium tuberculosis salicylate2 synthase, mbti 7 d2fn0a1 100.0 26 Fold:ADC synthase Superfamily:ADC synthase Family:ADC synthase 8 c3h9mA_ 100.0 26 PDB header:lyase Chain: A: PDB Molecule:p-aminobenzoate synthetase, component i; PDBTitle: crystal structure of para-aminobenzoate synthetase,2 component i from cytophaga hutchinsonii 9 d3bzna1 100.0 21 Fold:ADC synthase Superfamily:ADC synthase Family:ADC synthase 10 c3os6A_ 100.0 27 PDB header:isomerase Chain: A: PDB Molecule:isochorismate synthase dhbc; PDBTitle: crystal structure of putative 2,3-dihydroxybenzoate-specific2 isochorismate synthase, dhbc from bacillus anthracis. 11 c3hwoB_ 100.0 24 PDB header:isomerase Chain: B: PDB Molecule:isochorismate synthase entc; PDBTitle: crystal structure of escherichia coli enterobactin-specific2 isochorismate synthase entc in complex with isochorismate 12 c3r74B_ 100.0 25 PDB header:lyase, biosynthetic protein Chain: B: PDB Molecule:anthranilate/para-aminobenzoate synthases component i; PDBTitle: crystal structure of 2-amino-2-desoxyisochorismate synthase (adic)2 synthase phze from burkholderia lata 383 13 c3gseA_ 100.0 22 PDB header:isomerase Chain: A: PDB Molecule:menaquinone-specific isochorismate synthase; PDBTitle: crystal structure of menaquinone-specific isochorismate synthase from2 yersinia pestis co92 14 c3nqkA_ 39.0 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a structural genomics, unknown function2 (bacova_03322) from bacteroides ovatus at 2.61 a resolution 15 d1cvra1 34.7 24 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Gingipain R (RgpB), C-terminal domain 16 d2qdya1 27.7 14 Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain 17 c1wqkA_ 26.0 54 PDB header:toxin Chain: A: PDB Molecule:toxin apetx1; PDBTitle: solution structure of apetx1, a specific peptide inhibitor2 of human ether-a-go-go-related gene potassium channels3 from the venom of the sea anemone anthopleura4 elegantissima: a new fold for an herg toxin 18 d1ugpa_ 26.0 28 Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain 19 c2gutA_ 23.5 13 PDB header:transcription Chain: A: PDB Molecule:arc/mediator, positive cofactor 2 glutamine/q- PDBTitle: solution structure of the trans-activation domain of the2 human co-activator arc105 20 c1wxnA_ 22.3 46 PDB header:toxin Chain: A: PDB Molecule:toxin apetx2; PDBTitle: solution structure of apetx2, a specific peptide inhibitor2 of asic3 proton-gated channels 21 c2qkdA_ not modelled 21.8 9 PDB header:signaling protein, cell cycle Chain: A: PDB Molecule:zinc finger protein zpr1; PDBTitle: crystal structure of tandem zpr1 domains 22 d1rp3b_ not modelled 18.2 22 Fold:Non-globular all-alpha subunits of globular proteins Superfamily:Anti-sigma factor FlgM Family:Anti-sigma factor FlgM 23 d1v29a_ not modelled 15.2 21 Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain 24 c1t2bA_ not modelled 14.7 14 PDB header:unknown function Chain: A: PDB Molecule:p450cin; PDBTitle: crystal structure of cytochrome p450cin complexed with its2 substrate 1,8-cineole 25 d2fefa2 not modelled 12.3 15 Fold:PA2201 C-terminal domain-like Superfamily:PA2201 C-terminal domain-like Family:PA2201 C-terminal domain-like 26 c2xt6B_ not modelled 11.8 14 PDB header:lyase Chain: B: PDB Molecule:2-oxoglutarate decarboxylase; PDBTitle: crystal structure of mycobacterium smegmatis alpha-ketoglutarate2 decarboxylase homodimer (orthorhombic form) 27 c3qyhG_ not modelled 11.6 16 PDB header:lyase Chain: G: PDB Molecule:co-type nitrile hydratase alpha subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-h71l from2 pseudomonas putida. 28 c2kztA_ not modelled 10.9 14 PDB header:apoptosis Chain: A: PDB Molecule:programmed cell death protein 4; PDBTitle: structure of the tandem ma-3 region of pdcd4 29 c2npbA_ not modelled 10.8 30 PDB header:oxidoreductase Chain: A: PDB Molecule:selenoprotein w; PDBTitle: nmr solution structure of mouse selw 30 c2crqA_ not modelled 10.8 16 PDB header:translation Chain: A: PDB Molecule:mitochondrial translational initiation factor 3; PDBTitle: solution structure of c-terminal domain of riken cdna2 2810012l14 31 c2km1A_ not modelled 10.3 13 PDB header:protein binding Chain: A: PDB Molecule:protein dre2; PDBTitle: solution structure of the n-terminal domain of the yeast protein dre2 32 c2jgdA_ not modelled 10.0 24 PDB header:oxidoreductase Chain: A: PDB Molecule:2-oxoglutarate dehydrogenase e1 component; PDBTitle: e. coli 2-oxoglutarate dehydrogenase (e1o) 33 c2rg8A_ not modelled 9.3 14 PDB header:apoptosis, translation Chain: A: PDB Molecule:programmed cell death protein 4; PDBTitle: crystal structure of programmed for cell death 4 middle ma32 domain 34 d1e6va1 not modelled 8.7 15 Fold:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain Superfamily:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain Family:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain 35 c2k27A_ not modelled 8.7 18 PDB header:transcription regulator Chain: A: PDB Molecule:paired box protein pax-8; PDBTitle: solution structure of human pax8 paired box domain 36 d1tiga_ not modelled 7.7 15 Fold:IF3-like Superfamily:Translation initiation factor IF3, C-terminal domain Family:Translation initiation factor IF3, C-terminal domain 37 c1chmA_ not modelled 7.1 15 PDB header:creatinase Chain: A: PDB Molecule:creatine amidinohydrolase; PDBTitle: enzymatic mechanism of creatine amidinohydrolase as deduced2 from crystal structures 38 d2acfa1 not modelled 7.1 18 Fold:Macro domain-like Superfamily:Macro domain-like Family:Macro domain 39 d1chma1 not modelled 7.0 14 Fold:Ribonuclease H-like motif Superfamily:Creatinase/prolidase N-terminal domain Family:Creatinase/prolidase N-terminal domain 40 c2vu4A_ not modelled 6.7 15 PDB header:photosynthesis Chain: A: PDB Molecule:oxygen-evolving enhancer protein 2; PDBTitle: structure of psbp protein from spinacia oleracea at 1.98 a2 resolution 41 c2kcdA_ not modelled 6.7 31 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ssp0047; PDBTitle: solution nmr structure of ssp0047 from staphylococcus2 saprophyticus. northeast structural genomics consortium3 target syr6. 42 c3f8tA_ not modelled 6.6 27 PDB header:hydrolase Chain: A: PDB Molecule:predicted atpase involved in replication control, PDBTitle: crystal structure analysis of a full-length mcm homolog2 from methanopyrus kandleri 43 c3rrrB_ not modelled 6.6 22 PDB header:viral protein Chain: B: PDB Molecule:fusion glycoprotein f0; PDBTitle: structure of the rsv f protein in the post-fusion conformation 44 c2z1tA_ not modelled 6.5 24 PDB header:lyase Chain: A: PDB Molecule:hydrogenase expression/formation protein hype; PDBTitle: crystal structure of hydrogenase maturation protein hype 45 d1hxra_ not modelled 6.4 11 Fold:Mss4-like Superfamily:Mss4-like Family:RabGEF Mss4 46 d1a6ca2 not modelled 6.2 22 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Comoviridae-like VP 47 d2af7a1 not modelled 6.1 14 Fold:AhpD-like Superfamily:AhpD-like Family:CMD-like 48 d1eyba_ not modelled 6.0 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Homogentisate dioxygenase 49 c1ey2A_ not modelled 6.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:homogentisate 1,2-dioxygenase; PDBTitle: human homogentisate dioxygenase with fe(ii) 50 d2fu5a1 not modelled 5.9 11 Fold:Mss4-like Superfamily:Mss4-like Family:RabGEF Mss4 51 c3dupB_ not modelled 5.8 29 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family hydrolase from rhodospirillum2 rubrum atcc 11170 52 c3lf9A_ not modelled 5.8 24 PDB header:immune system Chain: A: PDB Molecule:4e10_d0_1is1a_001_c (t161); PDBTitle: crystal structure of hiv epitope-scaffold 4e10_d0_1is1a_001_c 53 d1xe7a_ not modelled 5.7 26 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YML079-like 54 d2ifea_ not modelled 5.6 9 Fold:IF3-like Superfamily:Translation initiation factor IF3, C-terminal domain Family:Translation initiation factor IF3, C-terminal domain 55 c3c66B_ not modelled 5.6 26 PDB header:transferase Chain: B: PDB Molecule:poly(a) polymerase; PDBTitle: yeast poly(a) polymerase in complex with fip1 residues 80-105 56 c2uvnB_ not modelled 5.6 8 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome p450 130; PDBTitle: crystal structure of econazole-bound cyp130 from2 mycobacterium tuberculosis 57 c3nicA_ not modelled 5.5 14 PDB header:hydrolase/dna Chain: A: PDB Molecule:eco29kir; PDBTitle: dna binding and cleavage by the giy-yig endonuclease r.eco29ki2 inactive variant y49f 58 c3lk2B_ not modelled 5.5 10 PDB header:protein binding Chain: B: PDB Molecule:f-actin-capping protein subunit beta isoforms 1 and 2; PDBTitle: crystal structure of capz bound to the uncapping motif from carmil 59 d1zo0a1 not modelled 5.4 22 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:Ornithine decarboxylase antizyme-like 60 c2dyyG_ not modelled 5.4 20 PDB header:structural genomics, unknown function Chain: G: PDB Molecule:upf0076 protein ph0854; PDBTitle: crystal structure of putative translation initiation2 inhibitor ph0854 from pyrococcus horikoshii 61 d1ug3a1 not modelled 5.4 13 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:MIF4G domain-like 62 c2yicC_ not modelled 5.3 25 PDB header:lyase Chain: C: PDB Molecule:2-oxoglutarate decarboxylase; PDBTitle: crystal structure of the suca domain of mycobacterium smegmatis2 alpha-ketoglutarate decarboxylase (triclinic form) 63 c3mgxB_ not modelled 5.1 9 PDB header:oxidoreductase Chain: B: PDB Molecule:putative p450 monooxygenase; PDBTitle: crystal structure of p450 oxyd that is involved in the biosynthesis of2 vancomycin-type antibiotics 64 c2hlwA_ not modelled 5.0 21 PDB header:ligase, signaling protein Chain: A: PDB Molecule:ubiquitin-conjugating enzyme e2 variant 1; PDBTitle: solution structure of the human ubiquitin-conjugating2 enzyme variant uev1a

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0