Emaill.a.kelley@imperial.ac.uk
DescriptionP76147
DateThu Jan 5 12:19:41 GMT 2012
Unique Job IDb85969e74e69360e

Detailed template information 

#Template Alignment Coverage3D Model Confidence% i.d. Template Information
1c1w25B_



100.0 32 PDB header:signaling protein
Chain: B: PDB Molecule:stalked-cell differentiation controlling protein;
PDBTitle: response regulator pled in complex with c-digmp
2c3ezuA_



100.0 27 PDB header:signaling protein
Chain: A: PDB Molecule:ggdef domain protein;
PDBTitle: crystal structure of multidomain protein of unknown function with2 ggdef-domain (np_951600.1) from geobacter sulfurreducens at 1.95 a3 resolution
3c3breA_



100.0 33 PDB header:signaling protein
Chain: A: PDB Molecule:probable two-component response regulator;
PDBTitle: crystal structure of p.aeruginosa pa3702
4c3i5aA_



100.0 32 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator/ggdef domain protein;
PDBTitle: crystal structure of full-length wpsr from pseudomonas syringae
5c3hvaA_



100.0 20 PDB header:transferase
Chain: A: PDB Molecule:protein fimx;
PDBTitle: crystal structure of fimx ggdef domain from pseudomonas2 aeruginosa
6c3i5cA_



100.0 32 PDB header:signaling protein
Chain: A: PDB Molecule:fusion of general control protein gcn4 and wspr response
PDBTitle: crystal structure of a fusion protein containing the leucine zipper of2 gcn4 and the ggdef domain of wspr from pseudomonas aeruginosa
7c3ignA_



100.0 27 PDB header:transferase
Chain: A: PDB Molecule:diguanylate cyclase;
PDBTitle: crystal structure of the ggdef domain from marinobacter2 aquaeolei diguanylate cyclase complexed with c-di-gmp -3 northeast structural genomics consortium target mqr89a
8c3i5bA_



100.0 36 PDB header:signaling protein
Chain: A: PDB Molecule:wspr response regulator;
PDBTitle: crystal structure of the isolated ggdef domain of wpsr from2 pseudomonas aeruginosa
9c3iclA_



99.9 28 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:eal/ggdef domain protein;
PDBTitle: x-ray structure of protein (eal/ggdef domain protein) from2 m.capsulatus, northeast structural genomics consortium3 target mcr174c
10d1w25a3



99.9 37 Fold:Ferredoxin-like
Superfamily:Nucleotide cyclase
Family:GGDEF domain
11c3mtkA_



99.9 19 PDB header:transferase
Chain: A: PDB Molecule:diguanylate cyclase/phosphodiesterase;
PDBTitle: x-ray structure of diguanylate cyclase/phosphodiesterase from2 caldicellulosiruptor saccharolyticus, northeast structural genomics3 consortium target clr27c
12c3qyyB_



99.9 30 PDB header:signaling protein/inhibitor
Chain: B: PDB Molecule:response regulator;
PDBTitle: a novel interaction mode between a microbial ggdef domain and the bis-2 (3, 5 )-cyclic di-gmp
13c3pjwA_



99.9 17 PDB header:lyase
Chain: A: PDB Molecule:cyclic dimeric gmp binding protein;
PDBTitle: structure of pseudomonas fluorescence lapd ggdef-eal dual domain, i23
14c3hvwA_



99.9 14 PDB header:lyase
Chain: A: PDB Molecule:diguanylate-cyclase (dgc);
PDBTitle: crystal structure of the ggdef domain of the pa2567 protein2 from pseudomonas aeruginosa, northeast structural genomics3 consortium target par365c
15c3gfzB_



99.3 11 PDB header:hydrolase, signaling protein
Chain: B: PDB Molecule:klebsiella pneumoniae blrp1;
PDBTitle: klebsiella pneumoniae blrp1 ph 6 manganese/cy-digmp complex
16c3p7nB_



98.1 6 PDB header:dna binding protein
Chain: B: PDB Molecule:sensor histidine kinase;
PDBTitle: crystal structure of light activated transcription factor el222 from2 erythrobacter litoralis
17c2qv6D_



97.2 17 PDB header:hydrolase
Chain: D: PDB Molecule:gtp cyclohydrolase iii;
PDBTitle: gtp cyclohydrolase iii from m. jannaschii (mj0145)2 complexed with gtp and metal ions
18c1wc6B_



90.8 12 PDB header:lyase
Chain: B: PDB Molecule:adenylate cyclase;
PDBTitle: soluble adenylyl cyclase cyac from s. platensis in complex2 with rp-atpalphas in presence of bicarbonate
19d1wc1a_



90.7 15 Fold:Ferredoxin-like
Superfamily:Nucleotide cyclase
Family:Adenylyl and guanylyl cyclase catalytic domain
20d1azsa_



89.6 15 Fold:Ferredoxin-like
Superfamily:Nucleotide cyclase
Family:Adenylyl and guanylyl cyclase catalytic domain
21c1cjkA_



not modelled 89.4 14 PDB header:lyase/lyase/signaling protein
Chain: A: PDB Molecule:adenylate cyclase, type v;
PDBTitle: complex of gs-alpha with the catalytic domains of mammalian adenylyl2 cyclase: complex with adenosine 5'-(alpha thio)-triphosphate (rp),3 mg, and mn
22d1fx4a_



not modelled 89.2 18 Fold:Ferredoxin-like
Superfamily:Nucleotide cyclase
Family:Adenylyl and guanylyl cyclase catalytic domain
23c1y10C_



not modelled 89.2 16 PDB header:lyase
Chain: C: PDB Molecule:hypothetical protein rv1264/mt1302;
PDBTitle: mycobacterial adenylyl cyclase rv1264, holoenzyme, inhibited state
24d1fx2a_



not modelled 88.7 15 Fold:Ferredoxin-like
Superfamily:Nucleotide cyclase
Family:Adenylyl and guanylyl cyclase catalytic domain
25c3et6A_



not modelled 88.4 14 PDB header:lyase
Chain: A: PDB Molecule:soluble guanylyl cyclase beta;
PDBTitle: the crystal structure of the catalytic domain of a eukaryotic2 guanylate cyclase
26c3uvjC_



not modelled 86.0 11 PDB header:lyase
Chain: C: PDB Molecule:guanylate cyclase soluble subunit alpha-3;
PDBTitle: crystal structure of the catalytic domain of the heterodimeric human2 soluble guanylate cyclase 1.
27c3mr7B_



not modelled 84.9 12 PDB header:hydrolase
Chain: B: PDB Molecule:adenylate/guanylate cyclase/hydrolase, alpha/beta fold
PDBTitle: crystal structure of adenylate/guanylate cyclase/hydrolase from2 silicibacter pomeroyi
28c2w01C_



not modelled 84.2 12 PDB header:lyase
Chain: C: PDB Molecule:adenylate cyclase;
PDBTitle: crystal structure of the guanylyl cyclase cya2
29c3r5gB_



not modelled 82.3 20 PDB header:lyase
Chain: B: PDB Molecule:cyab;
PDBTitle: crystal structure of the adenylyl cyclase cyab from p. aeruginosa
30d1vh8a_



not modelled 76.6 10 Fold:Bacillus chorismate mutase-like
Superfamily:IpsF-like
Family:IpsF-like
31c3b6nA_



not modelled 76.1 10 PDB header:lyase
Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate
PDBTitle: crystal structure of 2c-methyl-d-erythritol 2,4-2 cyclodiphosphate synthase pv003920 from plasmodium vivax
32c1s97D_



not modelled 73.0 15 PDB header:transferase/dna
Chain: D: PDB Molecule:dna polymerase iv;
PDBTitle: dpo4 with gt mismatch
33c1ybuA_



not modelled 72.6 13 PDB header:hydrolase
Chain: A: PDB Molecule:lipj;
PDBTitle: mycobacterium tuberculosis adenylyl cyclase rv1900c chd, in complex2 with a substrate analog.
34c2pmpA_



not modelled 72.4 12 PDB header:lyase
Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase;
PDBTitle: structure of 2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase from2 the isoprenoid biosynthetic pathway of arabidopsis thaliana
35d1w55a2



not modelled 70.5 11 Fold:Bacillus chorismate mutase-like
Superfamily:IpsF-like
Family:IpsF-like
36d1t0aa_



not modelled 70.1 14 Fold:Bacillus chorismate mutase-like
Superfamily:IpsF-like
Family:IpsF-like
37d1gx1a_



not modelled 69.4 12 Fold:Bacillus chorismate mutase-like
Superfamily:IpsF-like
Family:IpsF-like
38d1iv3a_



not modelled 68.8 14 Fold:Bacillus chorismate mutase-like
Superfamily:IpsF-like
Family:IpsF-like
39c2aq4A_



not modelled 67.9 23 PDB header:transferase
Chain: A: PDB Molecule:dna repair protein rev1;
PDBTitle: ternary complex of the catalytic core of rev1 with dna and dctp.
40c3f0gA_



not modelled 67.9 12 PDB header:lyase
Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase;
PDBTitle: co-crystal structure of 2c-methyl-d-erythritol 2,4-cyclodiphosphate2 synthase with cmp
41c1yk9A_



not modelled 66.2 12 PDB header:lyase
Chain: A: PDB Molecule:adenylate cyclase;
PDBTitle: crystal structure of a mutant form of the mycobacterial2 adenylyl cyclase rv1625c
42d1im4a_



not modelled 64.1 20 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:Lesion bypass DNA polymerase (Y-family), catalytic domain
43c3gqcB_



not modelled 61.0 24 PDB header:transferase/dna
Chain: B: PDB Molecule:dna repair protein rev1;
PDBTitle: structure of human rev1-dna-dntp ternary complex
44c3re3B_



not modelled 57.8 12 PDB header:lyase
Chain: B: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase;
PDBTitle: crystal structure of 2-c-methyl-d-erythritol 2,4-cyclodiphosphate2 synthase from francisella tularensis
45c1k1qA_



not modelled 55.6 18 PDB header:transcription
Chain: A: PDB Molecule:dbh protein;
PDBTitle: crystal structure of a dinb family error prone dna2 polymerase from sulfolobus solfataricus
46c2wz1B_



not modelled 55.3 9 PDB header:lyase
Chain: B: PDB Molecule:guanylate cyclase soluble subunit beta-1;
PDBTitle: structure of the catalytic domain of human soluble2 guanylate cyclase 1 beta 3.
47c1w57A_



not modelled 55.1 10 PDB header:transferase
Chain: A: PDB Molecule:ispd/ispf bifunctional enzyme;
PDBTitle: structure of the bifunctional ispdf from campylobacter2 jejuni containing zn
48d1jx4a2



not modelled 51.0 15 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:Lesion bypass DNA polymerase (Y-family), catalytic domain
49c2r8kB_



not modelled 50.7 28 PDB header:replication, transferase/dna
Chain: B: PDB Molecule:dna polymerase eta;
PDBTitle: structure of the eukaryotic dna polymerase eta in complex with 1,2-2 d(gpg)-cisplatin containing dna
50d1azsb_



not modelled 40.5 11 Fold:Ferredoxin-like
Superfamily:Nucleotide cyclase
Family:Adenylyl and guanylyl cyclase catalytic domain
51c1jihA_



not modelled 37.8 29 PDB header:translation
Chain: A: PDB Molecule:dna polymerase eta;
PDBTitle: yeast dna polymerase eta
52c3mr2A_



not modelled 32.7 32 PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase eta;
PDBTitle: human dna polymerase eta in complex with normal dna and incoming2 nucleotide (nrm)
53c2oh2B_



not modelled 31.3 21 PDB header:transferase/dna
Chain: B: PDB Molecule:dna polymerase kappa;
PDBTitle: ternary complex of human dna polymerase
54c1xaxA_



not modelled 24.9 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical upf0054 protein hi0004;
PDBTitle: nmr structure of hi0004, a putative essential gene product2 from haemophilus influenzae
55d1k1sa2



not modelled 24.9 16 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:Lesion bypass DNA polymerase (Y-family), catalytic domain
56d2ox6a1



not modelled 20.5 12 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:YdiL-like
57c3qkbB_



not modelled 20.0 20 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protein with unknown function which belongs to2 pfam duf74 family (pepe_0654) from pediococcus pentosaceus atcc 257453 at 2.73 a resolution
58d1jiha2



not modelled 19.5 28 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:Lesion bypass DNA polymerase (Y-family), catalytic domain
59c1yy3A_



not modelled 19.0 18 PDB header:isomerase
Chain: A: PDB Molecule:s-adenosylmethionine:trna ribosyltransferase-
PDBTitle: structure of s-adenosylmethionine:trna ribosyltransferase-2 isomerase (quea)
60d2o5aa1



not modelled 17.3 10 Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Iojap/YbeB-like
61d1wdia_



not modelled 16.9 18 Fold:QueA-like
Superfamily:QueA-like
Family:QueA-like
62c2uzhB_



not modelled 15.3 21 PDB header:lyase
Chain: B: PDB Molecule:2c-methyl-d-erythritol 2,4-cyclodiphosphate
PDBTitle: mycobacterium smegmatis 2c-methyl-d-erythritol-2,4-2 cyclodiphosphate synthase (ispf)
63c1qgeE_



not modelled 14.5 16 PDB header:hydrolase
Chain: E: PDB Molecule:protein (triacylglycerol hydrolase);
PDBTitle: new crystal form of pseudomonas glumae (formerly chromobacterium2 viscosum atcc 6918) lipase
64c2y1bA_



not modelled 14.1 14 PDB header:membrane protein
Chain: A: PDB Molecule:putative outer membrane protein, signal;
PDBTitle: crystal structure of the e. coli outer membrane lipoprotein2 rcsf
65d2fiqa1



not modelled 12.8 15 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:GatZ-like
66c2bblA_



not modelled 11.0 14 PDB header:viral protein
Chain: A: PDB Molecule:genome linked protein vpg;
PDBTitle: nmr structures of the peptide linked to the genome (vpg) of2 poliovirus in a stabilizing solvent
67c3l7xA_



not modelled 10.7 23 PDB header:cell cycle
Chain: A: PDB Molecule:putative hit-like protein involved in cell-cycle
PDBTitle: the crystal structure of smu.412c from streptococcus mutans ua159
68d1xxaa_



not modelled 10.7 18 Fold:DCoH-like
Superfamily:C-terminal domain of arginine repressor
Family:C-terminal domain of arginine repressor
69d2oyra1



not modelled 10.6 25 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:YhiQ-like
70d2djka1



not modelled 9.9 19 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:PDI-like
71c2r6zA_



not modelled 9.7 15 PDB header:transferase
Chain: A: PDB Molecule:upf0341 protein in rsp 3' region;
PDBTitle: crystal structure of the sam-dependent methyltransferase2 ngo1261 from neisseria gonorrhoeae, northeast structural3 genomics consortium target ngr48
72c3iyuY_



not modelled 9.3 20 PDB header:virus
Chain: Y: PDB Molecule:outer capsid protein vp4;
PDBTitle: atomic model of an infectious rotavirus particle
73c3onqB_



not modelled 9.1 7 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:regulator of polyketide synthase expression;
PDBTitle: crystal structure of regulator of polyketide synthase expression2 bad_0249 from bifidobacterium adolescentis
74c1iojA_



not modelled 9.0 56 PDB header:apolipoprotein
Chain: A: PDB Molecule:apoc-i;
PDBTitle: human apolipoprotein c-i, nmr, 18 structures
75d2dlxa1



not modelled 8.7 8 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:UAS domain
76c3anoA_



not modelled 8.6 19 PDB header:transferase
Chain: A: PDB Molecule:ap-4-a phosphorylase;
PDBTitle: crystal structure of a novel diadenosine 5',5'''-p1,p4-tetraphosphate2 phosphorylase from mycobacterium tuberculosis h37rv
77d1ei7a_



not modelled 8.5 40 Fold:Four-helical up-and-down bundle
Superfamily:TMV-like viral coat proteins
Family:TMV-like viral coat proteins
78d2pkwa1



not modelled 8.5 25 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:YhiQ-like
79d1nhoa_



not modelled 8.5 17 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
80c3kmlB_



not modelled 8.5 36 PDB header:viral protein
Chain: B: PDB Molecule:coat protein;
PDBTitle: circular permutant of the tobacco mosaic virus
81c3upsA_



not modelled 8.3 9 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:iojap-like protein;
PDBTitle: crystal structure of iojap-like protein from zymomonas mobilis
82d1zaka2



not modelled 8.3 29 Fold:Rubredoxin-like
Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain
Family:Microbial and mitochondrial ADK, insert "zinc finger" domain
83c3hf3A_



not modelled 8.3 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:chromate reductase;
PDBTitle: old yellow enzyme from thermus scotoductus sa-01
84c2zhoB_



not modelled 8.2 9 PDB header:transferase
Chain: B: PDB Molecule:aspartokinase;
PDBTitle: crystal structure of the regulatory subunit of aspartate2 kinase from thermus thermophilus (ligand free form)
85c3imiB_



not modelled 8.1 14 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hit family protein;
PDBTitle: 2.01 angstrom resolution crystal structure of a hit family protein2 from bacillus anthracis str. 'ames ancestor'
86c2i46A_



not modelled 8.1 5 PDB header:protein binding
Chain: A: PDB Molecule:adrenocortical dysplasia protein homolog;
PDBTitle: crystal structure of human tpp1
87d1vtmp_



not modelled 8.0 20 Fold:Four-helical up-and-down bundle
Superfamily:TMV-like viral coat proteins
Family:TMV-like viral coat proteins
88d1xm5a_



not modelled 8.0 18 Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Predicted metal-dependent hydrolase
89d1fo5a_



not modelled 7.9 8 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
90d2jnwa1



not modelled 7.8 10 Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:XPF/Rad1/Mus81 nuclease
91d2id1a1



not modelled 7.7 5 Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Iojap/YbeB-like
92d1h2vc2



not modelled 7.7 36 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:MIF4G domain-like
93d1qgva_



not modelled 7.6 25 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:spliceosomal protein U5-15Kd
94c3nj2B_



not modelled 7.4 19 PDB header:unknown function
Chain: B: PDB Molecule:duf269-containing protein;
PDBTitle: crystal structure of cce_0566 from the cyanobacterium cyanothece2 51142, a protein associated with nitrogen fixation from the duf2693 family
95c2htfA_



not modelled 7.4 27 PDB header:transferase
Chain: A: PDB Molecule:dna polymerase mu;
PDBTitle: the solution structure of the brct domain from human2 polymerase reveals homology with the tdt brct domain
96c2qsiB_



not modelled 7.3 11 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative hydrogenase expression/formation protein hupg;
PDBTitle: crystal structure of putative hydrogenase expression/formation protein2 hupg from rhodopseudomonas palustris cga009
97c1ps9A_



not modelled 7.3 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:2,4-dienoyl-coa reductase;
PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase
98c3k30B_



not modelled 7.2 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:histamine dehydrogenase;
PDBTitle: histamine dehydrogenase from nocardiodes simplex
99c2zqeA_



not modelled 7.1 14 PDB header:dna binding protein
Chain: A: PDB Molecule:muts2 protein;
PDBTitle: crystal structure of the smr domain of thermus thermophilus muts2