Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP77718
DateThu Jan 5 12:32:03 GMT 2012
Unique Job IDb77e7da066f58855

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2c5sA_
Top template information
PDB header:rna-binding protein
Chain: A: PDB Molecule:probable thiamine biosynthesis protein thii;
PDBTitle: crystal structure of bacillus anthracis thii, a trna-2 modifying enzyme containing the predicted rna-binding3 thump domain
Confidence and coverage
Confidence:100.0% Coverage: 76%
367 residues ( 76% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
462 residues ( 96%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKFIIKLFPEITIKSQSVRLRFIKILTGNIRNVLKHYDETLAVVRHWDNIEVRAKDENQR
Secondary structure 
SS confidence 
Disorder  ??
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  LAIRDALTRIPGIHHILEVEDVPFTDMHDIFEKALVQYRDQLEGKTFCVRVKRRGKHDFS
Secondary structure 
SS confidence 
Disorder 
?
???
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  SIDVERYVGGGLNQHIESARVKLTNPDVTVHLEVEDDRLLLIKGRYEGIGGFPIGTQEDV
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  LSLISGGFDSGVSSYMLMRRGCRVHYCFFNLGGAAHEIGVRQVAHYLWNRFGSSHRVRFV
Secondary structure 
SS confidence 
Disorder 
?
?
?
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  AINFEPVVGEILEKIDDGQMGVILKRMMVRAASKVAERYGVQALVTGEALGQVSSQTLTN
Secondary structure 
SS confidence 
Disorder 
?
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  LRLIDNVSDTLILRPLISYDKEHIINLARQIGTEDFARTMPEYCGVISKSPTVKAVKSKI
Secondary structure 
SS confidence 
Disorder 
??????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  EAEEEKFDFSILDKVVEEANNVDIREIAQQTEQEVVEVETVNGFGPNDVILDIRSIDEQE
Secondary structure 
SS confidence 
Disorder 
?
?????????????
?????
?
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  DKPLKVEGIDVVSLPFYKLSTKFGDLDQNKTWLLWCERGVMSRLQALYLREQGFNNVKVY
Secondary structure 
SS confidence 
Disorder 
??
?
????
Disorder confidence 
 
   ..
Sequence  RP
Secondary structure 
SS confidence 
Disorder  ??
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2c5s chain A

3D model

Region: 2 - 388
Aligned: 367
Modelled: 387
Confidence: 100.0%
Identity: 29%
PDB header:rna-binding protein
Chain: A: PDB Molecule:probable thiamine biosynthesis protein thii;
PDBTitle: crystal structure of bacillus anthracis thii, a trna-2 modifying enzyme containing the predicted rna-binding3 thump domain

Phyre2

PDB 1vbk chain A

3D model

Region: 1 - 333
Aligned: 300
Modelled: 311
Confidence: 100.0%
Identity: 23%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ph1313;
PDBTitle: crystal structure of ph1313 from pyrococcus horikoshii ot3

Phyre2

PDB 1vbk chain A domain 2

3D model

Region: 1 - 173
Aligned: 168
Modelled: 173
Confidence: 100.0%
Identity: 27%
Fold: THUMP domain
Superfamily: THUMP domain-like
Family: THUMP domain

Phyre2

PDB 2c5s chain A domain 2

3D model

Region: 2 - 173
Aligned: 165
Modelled: 172
Confidence: 100.0%
Identity: 25%
Fold: THUMP domain
Superfamily: THUMP domain-like
Family: THUMP domain

Phyre2

PDB 2c5s chain A domain 1

3D model

Region: 174 - 388
Aligned: 202
Modelled: 215
Confidence: 100.0%
Identity: 33%
Fold: Adenine nucleotide alpha hydrolase-like
Superfamily: Adenine nucleotide alpha hydrolases-like
Family: ThiI-like

Phyre2

PDB 1vbk chain A domain 1

3D model

Region: 174 - 333
Aligned: 132
Modelled: 136
Confidence: 100.0%
Identity: 17%
Fold: Adenine nucleotide alpha hydrolase-like
Superfamily: Adenine nucleotide alpha hydrolases-like
Family: ThiI-like

Phyre2

PDB 2der chain A

3D model

Region: 177 - 348
Aligned: 171
Modelled: 172
Confidence: 99.9%
Identity: 18%
PDB header:transferase/rna
Chain: A: PDB Molecule:trna-specific 2-thiouridylase mnma;
PDBTitle: cocrystal structure of an rna sulfuration enzyme mnma and2 trna-glu in the initial trna binding state

Phyre2

PDB 2hma chain A

3D model

Region: 176 - 344
Aligned: 166
Modelled: 169
Confidence: 99.9%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:probable trna (5-methylaminomethyl-2-thiouridylate)-
PDBTitle: the crystal structure of trna (5-methylaminomethyl-2-thiouridylate)-2 methyltransferase trmu from streptococcus pneumoniae

Phyre2

PDB 3k32 chain D

3D model

Region: 180 - 341
Aligned: 152
Modelled: 162
Confidence: 99.8%
Identity: 18%
PDB header:transferase
Chain: D: PDB Molecule:uncharacterized protein mj0690;
PDBTitle: the crystal structure of predicted subunit of trna2 methyltransferase from methanocaldococcus jannaschii dsm

Phyre2

PDB 2dpl chain A

3D model

Region: 177 - 373
Aligned: 176
Modelled: 181
Confidence: 99.8%
Identity: 17%
PDB header:ligase
Chain: A: PDB Molecule:gmp synthase [glutamine-hydrolyzing] subunit b;
PDBTitle: crystal structure of the gmp synthase from pyrococcus horikoshii ot3

Phyre2

PDB 1vl2 chain A domain 1

3D model

Region: 177 - 333
Aligned: 149
Modelled: 150
Confidence: 99.8%
Identity: 19%
Fold: Adenine nucleotide alpha hydrolase-like
Superfamily: Adenine nucleotide alpha hydrolases-like
Family: N-type ATP pyrophosphatases

Phyre2

PDB 2pg3 chain A domain 1

3D model

Region: 179 - 344
Aligned: 160
Modelled: 166
Confidence: 99.8%
Identity: 19%
Fold: Adenine nucleotide alpha hydrolase-like
Superfamily: Adenine nucleotide alpha hydrolases-like
Family: N-type ATP pyrophosphatases

Phyre2

PDB 1gpm chain A domain 1

3D model

Region: 177 - 341
Aligned: 150
Modelled: 165
Confidence: 99.8%
Identity: 19%
Fold: Adenine nucleotide alpha hydrolase-like
Superfamily: Adenine nucleotide alpha hydrolases-like
Family: N-type ATP pyrophosphatases

Phyre2

PDB 3tqi chain B

3D model

Region: 177 - 365
Aligned: 170
Modelled: 189
Confidence: 99.8%
Identity: 19%
PDB header:ligase
Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: structure of the gmp synthase (guaa) from coxiella burnetii

Phyre2

PDB 3bl5 chain E

3D model

Region: 177 - 344
Aligned: 161
Modelled: 168
Confidence: 99.8%
Identity: 17%
PDB header:hydrolase
Chain: E: PDB Molecule:queuosine biosynthesis protein quec;
PDBTitle: crystal structure of quec from bacillus subtilis: an enzyme2 involved in preq1 biosynthesis

Phyre2

PDB 1j20 chain A domain 1

3D model

Region: 179 - 333
Aligned: 147
Modelled: 148
Confidence: 99.8%
Identity: 16%
Fold: Adenine nucleotide alpha hydrolase-like
Superfamily: Adenine nucleotide alpha hydrolases-like
Family: N-type ATP pyrophosphatases

Phyre2

PDB 2ywc chain C

3D model

Region: 177 - 371
Aligned: 175
Modelled: 181
Confidence: 99.8%
Identity: 21%
PDB header:ligase
Chain: C: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: crystal structure of gmp synthetase from thermus thermophilus in2 complex with xmp

Phyre2

PDB 1k92 chain A domain 1

3D model

Region: 172 - 337
Aligned: 158
Modelled: 166
Confidence: 99.8%
Identity: 13%
Fold: Adenine nucleotide alpha hydrolase-like
Superfamily: Adenine nucleotide alpha hydrolases-like
Family: N-type ATP pyrophosphatases

Phyre2

PDB 3a2k chain B

3D model

Region: 174 - 333
Aligned: 152
Modelled: 159
Confidence: 99.8%
Identity: 14%
PDB header:ligase/rna
Chain: B: PDB Molecule:trna(ile)-lysidine synthase;
PDBTitle: crystal structure of tils complexed with trna

Phyre2

PDB 2nz2 chain A

3D model

Region: 178 - 333
Aligned: 148
Modelled: 156
Confidence: 99.8%
Identity: 18%
PDB header:ligase
Chain: A: PDB Molecule:argininosuccinate synthase;
PDBTitle: crystal structure of human argininosuccinate synthase in complex with2 aspartate and citrulline

Phyre2

PDB 3nta chain A

3D model

Region: 394 - 480
Aligned: 82
Modelled: 81
Confidence: 99.5%
Identity: 18%
PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide
PDBTitle: structure of the shewanella loihica pv-4 nadh-dependent persulfide2 reductase

Phyre2

PDB 3tp9 chain B

3D model

Region: 406 - 481
Aligned: 72
Modelled: 70
Confidence: 99.5%
Identity: 25%
PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase and rhodanese domain protein;
PDBTitle: crystal structure of alicyclobacillus acidocaldarius protein with2 beta-lactamase and rhodanese domains

Phyre2

PDB 3icr chain A

3D model

Region: 385 - 480
Aligned: 91
Modelled: 86
Confidence: 99.5%
Identity: 20%
PDB header:oxidoreductase
Chain: A: PDB Molecule:coenzyme a-disulfide reductase;
PDBTitle: crystal structure of oxidized bacillus anthracis coadr-rhd

Phyre2

PDB 3r2u chain C

3D model

Region: 384 - 481
Aligned: 93
Modelled: 93
Confidence: 99.4%
Identity: 15%
PDB header:hydrolase
Chain: C: PDB Molecule:metallo-beta-lactamase family protein;
PDBTitle: 2.1 angstrom resolution crystal structure of metallo-beta-lactamase2 from staphylococcus aureus subsp. aureus col

Phyre2

PDB 1yt8 chain A domain 4

3D model

Region: 400 - 481
Aligned: 77
Modelled: 75
Confidence: 99.3%
Identity: 22%
Fold: Rhodanese/Cell cycle control phosphatase
Superfamily: Rhodanese/Cell cycle control phosphatase
Family: Multidomain sulfurtransferase (rhodanese)

Phyre2

PDB 3foj chain A

3D model

Region: 405 - 479
Aligned: 71
Modelled: 69
Confidence: 99.3%
Identity: 23%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of ssp1007 from staphylococcus2 saprophyticus subsp. saprophyticus. northeast structural3 genomics target syr101a.

Phyre2
1
c2c5sA_
2
c1vbkA_
3
d1vbka2
4
d2c5sa2
5
d2c5sa1
6
d1vbka1
7
c2derA_
8
c2hmaA_
9
c3k32D_
10
c2dplA_
11
d1vl2a1
12
d2pg3a1
13
d1gpma1
14
c3tqiB_
15
c3bl5E_
16
d1j20a1
17
c2ywcC_
18
d1k92a1
19
c3a2kB_
20
c2nz2A_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
c3ntaA_
36
c3tp9B_
37
c3icrA_
38
39
c3r2uC_
40
41
42
d1yt8a4
43
44
c3fojA_
45
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2c5sA_
100.0 29 PDB header:rna-binding protein
Chain: A: PDB Molecule:probable thiamine biosynthesis protein thii;
PDBTitle: crystal structure of bacillus anthracis thii, a trna-2 modifying enzyme containing the predicted rna-binding3 thump domain
2c1vbkA_
100.0 23 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ph1313;
PDBTitle: crystal structure of ph1313 from pyrococcus horikoshii ot3
3d1vbka2
100.0 27 Fold:THUMP domain
Superfamily:THUMP domain-like
Family:THUMP domain
4d2c5sa2
100.0 25 Fold:THUMP domain
Superfamily:THUMP domain-like
Family:THUMP domain
5d2c5sa1
100.0 33 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:ThiI-like
6d1vbka1
100.0 17 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:ThiI-like
7c2derA_
99.9 18 PDB header:transferase/rna
Chain: A: PDB Molecule:trna-specific 2-thiouridylase mnma;
PDBTitle: cocrystal structure of an rna sulfuration enzyme mnma and2 trna-glu in the initial trna binding state
8c2hmaA_
99.9 19 PDB header:transferase
Chain: A: PDB Molecule:probable trna (5-methylaminomethyl-2-thiouridylate)-
PDBTitle: the crystal structure of trna (5-methylaminomethyl-2-thiouridylate)-2 methyltransferase trmu from streptococcus pneumoniae
9c3k32D_
99.8 18 PDB header:transferase
Chain: D: PDB Molecule:uncharacterized protein mj0690;
PDBTitle: the crystal structure of predicted subunit of trna2 methyltransferase from methanocaldococcus jannaschii dsm
10c2dplA_
99.8 17 PDB header:ligase
Chain: A: PDB Molecule:gmp synthase [glutamine-hydrolyzing] subunit b;
PDBTitle: crystal structure of the gmp synthase from pyrococcus horikoshii ot3
11d1vl2a1
99.8 19 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
12d2pg3a1
99.8 19 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
13d1gpma1
99.8 19 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
14c3tqiB_
99.8 19 PDB header:ligase
Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: structure of the gmp synthase (guaa) from coxiella burnetii
15c3bl5E_
99.8 17 PDB header:hydrolase
Chain: E: PDB Molecule:queuosine biosynthesis protein quec;
PDBTitle: crystal structure of quec from bacillus subtilis: an enzyme2 involved in preq1 biosynthesis
16d1j20a1
99.8 16 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
17c2ywcC_
99.8 21 PDB header:ligase
Chain: C: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: crystal structure of gmp synthetase from thermus thermophilus in2 complex with xmp
18d1k92a1
99.8 13 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
19c3a2kB_
99.8 14 PDB header:ligase/rna
Chain: B: PDB Molecule:trna(ile)-lysidine synthase;
PDBTitle: crystal structure of tils complexed with trna
20c2nz2A_
99.8 18 PDB header:ligase
Chain: A: PDB Molecule:argininosuccinate synthase;
PDBTitle: crystal structure of human argininosuccinate synthase in complex with2 aspartate and citrulline
21c2e21A_
not modelled 99.8 17 PDB header:ligase
Chain: A: PDB Molecule:trna(ile)-lysidine synthase;
PDBTitle: crystal structure of tils in a complex with amppnp from aquifex2 aeolicus.
22d1wy5a1
not modelled 99.7 15 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:PP-loop ATPase
23c1gpmD_
not modelled 99.7 18 PDB header:transferase (glutamine amidotransferase)
Chain: D: PDB Molecule:gmp synthetase;
PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate
24c3fiuD_
not modelled 99.7 13 PDB header:ligase
Chain: D: PDB Molecule:nh(3)-dependent nad(+) synthetase;
PDBTitle: structure of nmn synthetase from francisella tularensis
25c1vl2C_
not modelled 99.7 19 PDB header:ligase
Chain: C: PDB Molecule:argininosuccinate synthase;
PDBTitle: crystal structure of argininosuccinate synthase (tm1780) from2 thermotoga maritima at 1.65 a resolution
26c1ni5A_
not modelled 99.7 20 PDB header:cell cycle
Chain: A: PDB Molecule:putative cell cycle protein mesj;
PDBTitle: structure of the mesj pp-atpase from escherichia coli
27c1kh2D_
not modelled 99.7 16 PDB header:ligase
Chain: D: PDB Molecule:argininosuccinate synthetase;
PDBTitle: crystal structure of thermus thermophilus hb82 argininosuccinate synthetase in complex with atp
28d1ni5a1
not modelled 99.7 18 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:PP-loop ATPase
29c3uowB_
not modelled 99.7 16 PDB header:ligase
Chain: B: PDB Molecule:gmp synthetase;
PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum
30c3p52B_
not modelled 99.6 15 PDB header:ligase
Chain: B: PDB Molecule:nh(3)-dependent nad(+) synthetase;
PDBTitle: nh3-dependent nad synthetase from campylobacter jejuni subsp. jejuni2 nctc 11168 in complex with the nitrate ion
31c2vxoB_
not modelled 99.6 19 PDB header:ligase
Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: human gmp synthetase in complex with xmp
32c1k97A_
not modelled 99.6 13 PDB header:ligase
Chain: A: PDB Molecule:argininosuccinate synthase;
PDBTitle: crystal structure of e. coli argininosuccinate synthetase in complex2 with aspartate and citrulline
33d2dira1
not modelled 99.5 23 Fold:THUMP domain
Superfamily:THUMP domain-like
Family:Minimal THUMP
34c2e18B_
not modelled 99.5 20 PDB header:ligase
Chain: B: PDB Molecule:nh(3)-dependent nad(+) synthetase;
PDBTitle: crystal structure of project ph0182 from pyrococcus horikoshii ot3
35c3ntaA_
99.5 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide
PDBTitle: structure of the shewanella loihica pv-4 nadh-dependent persulfide2 reductase
36c3tp9B_
99.5 25 PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase and rhodanese domain protein;
PDBTitle: crystal structure of alicyclobacillus acidocaldarius protein with2 beta-lactamase and rhodanese domains
37c3icrA_
99.5 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:coenzyme a-disulfide reductase;
PDBTitle: crystal structure of oxidized bacillus anthracis coadr-rhd
38d1xnga1
not modelled 99.5 12 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
39c3r2uC_
99.4 15 PDB header:hydrolase
Chain: C: PDB Molecule:metallo-beta-lactamase family protein;
PDBTitle: 2.1 angstrom resolution crystal structure of metallo-beta-lactamase2 from staphylococcus aureus subsp. aureus col
40c3q4gA_
not modelled 99.4 17 PDB header:ligase
Chain: A: PDB Molecule:nh(3)-dependent nad(+) synthetase;
PDBTitle: structure of nad synthetase from vibrio cholerae
41c1yt8A_
not modelled 99.4 12 PDB header:transferase
Chain: A: PDB Molecule:thiosulfate sulfurtransferase;
PDBTitle: crystal structure of thiosulfate sulfurtransferase from pseudomonas2 aeruginosa
42d1yt8a4
99.3 22 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
43d1kqpa_
not modelled 99.3 15 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
44c3fojA_
99.3 23 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of ssp1007 from staphylococcus2 saprophyticus subsp. saprophyticus. northeast structural3 genomics target syr101a.
45c2jtqA_
not modelled 99.3 19 PDB header:transferase
Chain: A: PDB Molecule:phage shock protein e;
PDBTitle: rhodanese from e.coli
46d1wxia1
not modelled 99.2 16 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
47c3ilmD_
not modelled 99.2 19 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:alr3790 protein;
PDBTitle: crystal structure of the alr3790 protein from anabaena sp. northeast2 structural genomics consortium target nsr437h
48d1sura_
not modelled 99.2 13 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:PAPS reductase-like
49c3d1pA_
not modelled 99.2 22 PDB header:transferase
Chain: A: PDB Molecule:putative thiosulfate sulfurtransferase yor285w;
PDBTitle: atomic resolution structure of uncharacterized protein from2 saccharomyces cerevisiae
50c3dpiA_
not modelled 99.2 19 PDB header:ligase
Chain: A: PDB Molecule:nad+ synthetase;
PDBTitle: crystal structure of nad+ synthetase from burkholderia pseudomallei
51c2hhgA_
not modelled 99.2 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein rpa3614;
PDBTitle: structure of protein of unknown function rpa3614, possible tyrosine2 phosphatase, from rhodopseudomonas palustris cga009
52c1wv9B_
not modelled 99.2 23 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:rhodanese homolog tt1651;
PDBTitle: crystal structure of rhodanese homolog tt1651 from an2 extremely thermophilic bacterium thermus thermophilus hb8
53d1yt8a3
not modelled 99.1 13 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
54c3emeA_
not modelled 99.1 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:rhodanese-like domain protein;
PDBTitle: crystal structure of rhodanese-like domain protein from2 staphylococcus aureus
55c3olhA_
not modelled 99.1 25 PDB header:transferase
Chain: A: PDB Molecule:3-mercaptopyruvate sulfurtransferase;
PDBTitle: human 3-mercaptopyruvate sulfurtransferase
56c3gk5A_
not modelled 99.1 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized rhodanese-related protein
PDBTitle: crystal structure of rhodanese-related protein (tvg0868615)2 from thermoplasma volcanium, northeast structural genomics3 consortium target tvr109a
57c3k9rA_
not modelled 99.1 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:alr3790 protein;
PDBTitle: x-ray structure of the rhodanese-like domain of the alr3790 protein2 from anabaena sp. northeast structural genomics consortium target3 nsr437c.
58d1gmxa_
not modelled 99.1 24 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Single-domain sulfurtransferase
59d1ru8a_
not modelled 99.1 18 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
60d1yt8a2
not modelled 99.1 15 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
61c2o8vA_
not modelled 99.1 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:phosphoadenosine phosphosulfate reductase;
PDBTitle: paps reductase in a covalent complex with thioredoxin c35a
62c3g5jA_
not modelled 99.1 21 PDB header:nucleotide binding protein
Chain: A: PDB Molecule:putative atp/gtp binding protein;
PDBTitle: crystal structure of n-terminal domain of putative atp/gtp binding2 protein from clostridium difficile 630
63c3ldgA_
not modelled 99.1 14 PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein smu.472;
PDBTitle: crystal structure of smu.472, a putative methyltransferase complexed2 with sah
64d1okga2
not modelled 99.1 21 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
65c3i2vA_
not modelled 99.0 19 PDB header:transferase
Chain: A: PDB Molecule:adenylyltransferase and sulfurtransferase mocs3;
PDBTitle: crystal structure of human mocs3 rhodanese-like domain
66c2fsxA_
not modelled 99.0 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:cog0607: rhodanese-related sulfurtransferase;
PDBTitle: crystal structure of rv0390 from m. tuberculosis
67c3ippA_
not modelled 99.0 19 PDB header:transferase
Chain: A: PDB Molecule:putative thiosulfate sulfurtransferase ynje;
PDBTitle: crystal structure of sulfur-free ynje
68d1tq1a_
not modelled 99.0 23 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Single-domain sulfurtransferase
69c2k0zA_
not modelled 99.0 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein hp1203;
PDBTitle: solution nmr structure of protein hp1203 from helicobacter pylori2 26695. northeast structural genomics consortium (nesg) target3 pt1/ontario center for structural proteomics target hp1203
70c2dcqA_
not modelled 99.0 25 PDB header:unknown function
Chain: A: PDB Molecule:putative protein at4g01050;
PDBTitle: fully automated nmr structure determination of the2 rhodanese homology domain at4g01050(175-295) from3 arabidopsis thaliana
71c1urhA_
not modelled 99.0 23 PDB header:transferase
Chain: A: PDB Molecule:3-mercaptopyruvate sulfurtransferase;
PDBTitle: the "rhodanese" fold and catalytic mechanism of2 3-mercaptopyruvate sulfotransferases: crystal structure3 of ssea from escherichia coli
72c3hzuA_
not modelled 99.0 17 PDB header:transferase
Chain: A: PDB Molecule:thiosulfate sulfurtransferase ssea;
PDBTitle: crystal structure of probable thiosulfate sulfurtransferase ssea2 (rhodanese) from mycobacterium tuberculosis
73d1uara2
not modelled 99.0 21 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
74c3aaxB_
not modelled 98.9 28 PDB header:transferase
Chain: B: PDB Molecule:putative thiosulfate sulfurtransferase;
PDBTitle: crystal structure of probable thiosulfate sulfurtransferase2 cysa3 (rv3117) from mycobacterium tuberculosis: monoclinic3 form
75d1yt8a1
not modelled 98.9 26 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
76c1e0cA_
not modelled 98.9 23 PDB header:sulfurtransferase
Chain: A: PDB Molecule:sulfurtransferase;
PDBTitle: sulfurtransferase from azotobacter vinelandii
77c1boiA_
not modelled 98.9 21 PDB header:transferase
Chain: A: PDB Molecule:rhodanese;
PDBTitle: n-terminally truncated rhodanese
78c3nhvE_
not modelled 98.9 18 PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:bh2092 protein;
PDBTitle: crystal structure of bh2092 protein from bacillus halodurans,2 northeast structural genomics consortium target bhr228f
79d1qxna_
not modelled 98.8 17 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Single-domain sulfurtransferase
80c1okgA_
not modelled 98.8 18 PDB header:transferase
Chain: A: PDB Molecule:possible 3-mercaptopyruvate sulfurtransferase;
PDBTitle: 3-mercaptopyruvate sulfurtransferase from leishmania major
81c1uarA_
not modelled 98.8 21 PDB header:transferase
Chain: A: PDB Molecule:rhodanese;
PDBTitle: crystal structure of rhodanese from thermus thermophilus hb8
82c3k0bA_
not modelled 98.8 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:predicted n6-adenine-specific dna methylase;
PDBTitle: crystal structure of a predicted n6-adenine-specific dna methylase2 from listeria monocytogenes str. 4b f2365
83c2eg4B_
not modelled 98.7 18 PDB header:transferase
Chain: B: PDB Molecule:probable thiosulfate sulfurtransferase;
PDBTitle: crystal structure of probable thiosulfate sulfurtransferase
84d1urha2
not modelled 98.7 23 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
85d1e0ca1
not modelled 98.7 9 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
86c3n05B_
not modelled 98.7 20 PDB header:ligase
Chain: B: PDB Molecule:nh(3)-dependent nad(+) synthetase;
PDBTitle: crystal structure of nh3-dependent nad+ synthetase from streptomyces2 avermitilis
87d1ymka1
not modelled 98.6 22 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Cell cycle control phosphatase, catalytic domain
88d1c25a_
not modelled 98.6 23 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Cell cycle control phosphatase, catalytic domain
89c3lduA_
not modelled 98.6 12 PDB header:transferase
Chain: A: PDB Molecule:putative methylase;
PDBTitle: the crystal structure of a possible methylase from2 clostridium difficile 630.
90d2d13a1
not modelled 98.6 23 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
91c3f4aA_
not modelled 98.6 19 PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized protein ygr203w;
PDBTitle: structure of ygr203w, a yeast protein tyrosine phosphatase2 of the rhodanese family
92c2goyC_
not modelled 98.6 16 PDB header:oxidoreductase
Chain: C: PDB Molecule:adenosine phosphosulfate reductase;
PDBTitle: crystal structure of assimilatory adenosine 5'-2 phosphosulfate reductase with bound aps
93c2uzqE_
not modelled 98.5 25 PDB header:hydrolase
Chain: E: PDB Molecule:m-phase inducer phosphatase 2;
PDBTitle: protein phosphatase, new crystal form
94d1e0ca2
not modelled 98.5 26 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
95d1rhsa2
not modelled 98.5 24 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
96c2j6pF_
not modelled 98.5 18 PDB header:oxidoreductase
Chain: F: PDB Molecule:sb(v)-as(v) reductase;
PDBTitle: structure of as-sb reductase from leishmania major
97c2oq2B_
not modelled 98.4 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:phosphoadenosine phosphosulfate reductase;
PDBTitle: crystal structure of yeast paps reductase with pap, a product complex
98d1t3ka_
not modelled 98.4 14 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Cell cycle control phosphatase, catalytic domain
99d1rhsa1
not modelled 98.3 14 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
100d1zuna1
not modelled 98.3 12 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:PAPS reductase-like
101d1urha1
not modelled 98.2 23 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
102d1okga1
not modelled 98.2 9 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
103c3op3A_
not modelled 98.2 18 PDB header:hydrolase
Chain: A: PDB Molecule:m-phase inducer phosphatase 3;
PDBTitle: crystal structure of cell division cycle 25c protein isoform a from2 homo sapiens
104c1zunA_
not modelled 98.1 12 PDB header:transferase
Chain: A: PDB Molecule:sulfate adenylyltransferase subunit 2;
PDBTitle: crystal structure of a gtp-regulated atp sulfurylase2 heterodimer from pseudomonas syringae
105c1ct9D_
not modelled 98.1 21 PDB header:ligase
Chain: D: PDB Molecule:asparagine synthetase b;
PDBTitle: crystal structure of asparagine synthetase b from2 escherichia coli
106d1uara1
not modelled 98.0 10 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
107d1q15a1
not modelled 98.0 18 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
108c2vswB_
not modelled 97.9 16 PDB header:hydrolase
Chain: B: PDB Molecule:dual specificity protein phosphatase 16;
PDBTitle: the structure of the rhodanese domain of the human dual2 specificity phosphatase 16
109d1jgta1
not modelled 97.9 17 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
110d1ct9a1
not modelled 97.8 14 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
111c2oucB_
not modelled 97.8 18 PDB header:hydrolase
Chain: B: PDB Molecule:dual specificity protein phosphatase 10;
PDBTitle: crystal structure of the map kinase binding domain of mkp5
112d1hzma_
not modelled 97.7 21 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Cell cycle control phosphatase, catalytic domain
113d2gwfa1
not modelled 97.5 13 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Ubiquitin carboxyl-terminal hydrolase 8, USP8
114c1q15A_
not modelled 97.4 18 PDB header:biosynthetic protein
Chain: A: PDB Molecule:cara;
PDBTitle: carbapenam synthetase
115d1whba_
not modelled 97.3 11 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Ubiquitin carboxyl-terminal hydrolase 8, USP8
116c1m1zB_
not modelled 97.3 17 PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactam synthetase;
PDBTitle: beta-lactam synthetase apo enzyme
117c3g59A_
not modelled 97.3 12 PDB header:transferase
Chain: A: PDB Molecule:fmn adenylyltransferase;
PDBTitle: crystal structure of candida glabrata fmn2 adenylyltransferase in complex with atp
118c3dlaD_
not modelled 97.1 18 PDB header:ligase
Chain: D: PDB Molecule:glutamine-dependent nad(+) synthetase;
PDBTitle: x-ray crystal structure of glutamine-dependent nad+ synthetase from2 mycobacterium tuberculosis bound to naad+ and don
119c3ilvA_
not modelled 97.0 16 PDB header:ligase
Chain: A: PDB Molecule:glutamine-dependent nad(+) synthetase;
PDBTitle: crystal structure of a glutamine-dependent nad(+) synthetase2 from cytophaga hutchinsonii
120c3flhC_
not modelled 96.9 33 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein lp_1913;
PDBTitle: crystal structure of lp_1913 protein from lactobacillus2 plantarum,northeast structural genomics consortium target3 lpr140b

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0