Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	D	F	I	T	E	A	W	L	R	A	N	H	T	L	S	E	G	A	E	I	H	L	P	A	D	S	R	L	T	P	S	A	R	E	L	L	E	S	R	H	L	R	I	K	F	I	D	E	Q	G	R	L	F	V	D	D	E	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?												?	?																						?									?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	Q	P	Q	P	V	H	G	L	T	S	S	D	E	H	P	Q	A	C	C	E	L	C	R	Q	P	V	A	K	K	P	D	T	L	T	H	L	S	A	E	K	M	V	A	K	S	D	P	R	L	G	F	R	A	V	L	D	S	T	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																							?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	L	A	V	W	L	Q	I	E	L	A	E	P	W	Q	P	W	L	A	D	I	R	S	R	L	G	N	I	M	R	A	D	A	L	G	E	P	L	G	C	Q	A	I	V	G	L	S	D	E	D	L	H	R	L	S	H	Q	P	L	R
Secondary structure
SS confidence
Disorder																																	?			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Y	L	D	H	D	H	L	V	P	E	A	S	H	G	R	D	A	A	L	L	N	L	L	R	T	K	V	R	E	T	E	T	V	A	A	Q	V	F	I	T	R	S	F	E	V	L	R	P	D	I	L	Q	A	L	N	R	L	S	S	T
Secondary structure
SS confidence
Disorder												?																													?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Sequence		V	Y	V	M	M	I	L	S	V	T	K	Q	P	L	T	V	K	Q	I	Q	Q	R	L	G	E	T	Q
Secondary structure
SS confidence
Disorder																								?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3ke4 chain B Region: 93 - 255 Aligned: 159 Modelled: 163 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:hypothetical cytosolic protein; PDBTitle: crystal structure of a pduo-type atp:cob(i)alamin adenosyltransferase2 from bacillus cereus Phyre2 PDB 2nt8 chain A Region: 93 - 248 Aligned: 153 Modelled: 156 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:cobalamin adenosyltransferase; PDBTitle: atp bound at the active site of a pduo type atp:co(i)rrinoid2 adenosyltransferase from lactobacillus reuteri Phyre2 PDB 3ci1 chain A Region: 93 - 248 Aligned: 153 Modelled: 156 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:cobalamin adenosyltransferase pduo-like protein; PDBTitle: structure of the pduo-type atp:co(i)rrinoid2 adenosyltransferase from lactobacillus reuteri complexed3 with four-coordinate cob(ii)alamin and atp Phyre2 PDB 2zhz chain C Region: 93 - 252 Aligned: 154 Modelled: 160 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: C: PDB Molecule:atp:cob(i)alamin adenosyltransferase, putative; PDBTitle: crystal structure of a pduo-type atp:cobalamin adenosyltransferase2 from burkholderia thailandensis Phyre2 PDB 1rty chain B Region: 102 - 253 Aligned: 148 Modelled: 152 Confidence: 100.0% Identity: 18% Fold: Ferritin-like Superfamily: Cobalamin adenosyltransferase-like Family: Cobalamin adenosyltransferase Phyre2 PDB 2ah6 chain B Region: 102 - 252 Aligned: 147 Modelled: 151 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: B: PDB Molecule:bh1595, unknown conserved protein; PDBTitle: crystal structure of a putative cobalamin adenosyltransferase (bh1595)2 from bacillus halodurans c-125 at 1.60 a resolution Phyre2 PDB 2g2d chain A Region: 106 - 253 Aligned: 146 Modelled: 148 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:atp:cobalamin adenosyltransferase; PDBTitle: crystal structure of a putative pduo-type atp:cobalamin2 adenosyltransferase from mycobacterium tuberculosis Phyre2 PDB 1woz chain A Region: 105 - 254 Aligned: 146 Modelled: 150 Confidence: 100.0% Identity: 16% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:177aa long conserved hypothetical protein (st1454); PDBTitle: crystal structure of uncharacterized protein st1454 from sulfolobus2 tokodaii Phyre2 PDB 1wvt chain A Region: 105 - 245 Aligned: 133 Modelled: 138 Confidence: 100.0% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein st2180; PDBTitle: crystal structure of uncharacterized protein st2180 from sulfolobus2 tokodaii Phyre2 PDB 1rty chain A Region: 105 - 253 Aligned: 142 Modelled: 149 Confidence: 100.0% Identity: 19% Fold: Ferritin-like Superfamily: Cobalamin adenosyltransferase-like Family: Cobalamin adenosyltransferase Phyre2 PDB 1nog chain A Region: 107 - 252 Aligned: 141 Modelled: 146 Confidence: 100.0% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein ta0546; PDBTitle: crystal structure of conserved protein 0546 from thermoplasma2 acidophilum Phyre2 PDB 1nog chain A Region: 107 - 252 Aligned: 141 Modelled: 146 Confidence: 100.0% Identity: 13% Fold: Ferritin-like Superfamily: Cobalamin adenosyltransferase-like Family: Cobalamin adenosyltransferase Phyre2 PDB 2idx chain A Region: 106 - 248 Aligned: 133 Modelled: 143 Confidence: 100.0% Identity: 13% PDB header:transferase Chain: A: PDB Molecule:cob(i)yrinic acid a,c-diamide PDBTitle: structure of human atp:cobalamin adenosyltransferase bound2 to atp. Phyre2 PDB 1wy1 chain B Region: 106 - 245 Aligned: 133 Modelled: 140 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: B: PDB Molecule:hypothetical protein ph0671; PDBTitle: crystal structure of the ph0671 protein from pyrococcus horikoshii ot3 Phyre2 PDB 3t6g chain B Region: 168 - 261 Aligned: 83 Modelled: 94 Confidence: 71.9% Identity: 18% PDB header:signaling protein, cell adhesion Chain: B: PDB Molecule:breast cancer anti-estrogen resistance protein 1; PDBTitle: structure of the complex between nsp3 (shep1) and p130cas Phyre2 PDB 1nig chain A Region: 103 - 241 Aligned: 124 Modelled: 124 Confidence: 62.4% Identity: 13% Fold: Ferritin-like Superfamily: Cobalamin adenosyltransferase-like Family: Hypothetical protein Ta1238 Phyre2 PDB 1w4h chain A domain 1 Region: 25 - 53 Aligned: 29 Modelled: 29 Confidence: 53.1% Identity: 28% Fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Phyre2 PDB 1bal chain A Region: 25 - 52 Aligned: 28 Modelled: 28 Confidence: 48.2% Identity: 29% Fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Phyre2 PDB 2cyu chain A domain 1 Region: 30 - 53 Aligned: 24 Modelled: 24 Confidence: 46.8% Identity: 33% Fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Phyre2 PDB 1r61 chain A Region: 5 - 49 Aligned: 44 Modelled: 45 Confidence: 41.0% Identity: 25% Fold: The "swivelling" beta/beta/alpha domain Superfamily: Putative cyclase Family: Putative cyclase Phyre2 1 c3ke4B_ 2 c2nt8A_ 3 c3ci1A_ 4 c2zhzC_ 5 d1rtyb_ 6 c2ah6B_ 7 c2g2dA_ 8 c1wozA_ 9 c1wvtA_ 10 d1rtya_ 11 c1nogA_ 12 d1noga_ 13 c2idxA_ 14 c1wy1B_ 15 c3t6gB_ 16 d1niga_ 17 d1w4ha1 18 d1bala_ 19 d2cyua1 20 d1r61a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3ke4B_ 100.0 17 PDB header:transferase Chain: B: PDB Molecule:hypothetical cytosolic protein; PDBTitle: crystal structure of a pduo-type atp:cob(i)alamin adenosyltransferase2 from bacillus cereus 2 c2nt8A_ 100.0 16 PDB header:transferase Chain: A: PDB Molecule:cobalamin adenosyltransferase; PDBTitle: atp bound at the active site of a pduo type atp:co(i)rrinoid2 adenosyltransferase from lactobacillus reuteri 3 c3ci1A_ 100.0 16 PDB header:transferase Chain: A: PDB Molecule:cobalamin adenosyltransferase pduo-like protein; PDBTitle: structure of the pduo-type atp:co(i)rrinoid2 adenosyltransferase from lactobacillus reuteri complexed3 with four-coordinate cob(ii)alamin and atp 4 c2zhzC_ 100.0 19 PDB header:transferase Chain: C: PDB Molecule:atp:cob(i)alamin adenosyltransferase, putative; PDBTitle: crystal structure of a pduo-type atp:cobalamin adenosyltransferase2 from burkholderia thailandensis 5 d1rtyb_ 100.0 18 Fold:Ferritin-like Superfamily:Cobalamin adenosyltransferase-like Family:Cobalamin adenosyltransferase 6 c2ah6B_ 100.0 18 PDB header:transferase Chain: B: PDB Molecule:bh1595, unknown conserved protein; PDBTitle: crystal structure of a putative cobalamin adenosyltransferase (bh1595)2 from bacillus halodurans c-125 at 1.60 a resolution 7 c2g2dA_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:atp:cobalamin adenosyltransferase; PDBTitle: crystal structure of a putative pduo-type atp:cobalamin2 adenosyltransferase from mycobacterium tuberculosis 8 c1wozA_ 100.0 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:177aa long conserved hypothetical protein (st1454); PDBTitle: crystal structure of uncharacterized protein st1454 from sulfolobus2 tokodaii 9 c1wvtA_ 100.0 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein st2180; PDBTitle: crystal structure of uncharacterized protein st2180 from sulfolobus2 tokodaii 10 d1rtya_ 100.0 19 Fold:Ferritin-like Superfamily:Cobalamin adenosyltransferase-like Family:Cobalamin adenosyltransferase 11 c1nogA_ 100.0 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein ta0546; PDBTitle: crystal structure of conserved protein 0546 from thermoplasma2 acidophilum 12 d1noga_ 100.0 13 Fold:Ferritin-like Superfamily:Cobalamin adenosyltransferase-like Family:Cobalamin adenosyltransferase 13 c2idxA_ 100.0 13 PDB header:transferase Chain: A: PDB Molecule:cob(i)yrinic acid a,c-diamide PDBTitle: structure of human atp:cobalamin adenosyltransferase bound2 to atp. 14 c1wy1B_ 100.0 20 PDB header:transferase Chain: B: PDB Molecule:hypothetical protein ph0671; PDBTitle: crystal structure of the ph0671 protein from pyrococcus horikoshii ot3 15 c3t6gB_ 71.9 18 PDB header:signaling protein, cell adhesion Chain: B: PDB Molecule:breast cancer anti-estrogen resistance protein 1; PDBTitle: structure of the complex between nsp3 (shep1) and p130cas 16 d1niga_ 62.4 13 Fold:Ferritin-like Superfamily:Cobalamin adenosyltransferase-like Family:Hypothetical protein Ta1238 17 d1w4ha1 53.1 28 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 18 d1bala_ 48.2 29 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 19 d2cyua1 46.8 33 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 20 d1r61a_ 41.0 25 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Putative cyclase Family:Putative cyclase 21 c2eq9C_ not modelled 38.6 27 PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdb 22 c2eq7C_ not modelled 37.2 18 PDB header:oxidoreductase Chain: C: PDB Molecule:2-oxoglutarate dehydrogenase e2 component; PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo 23 c1w3dA_ not modelled 35.9 22 PDB header:transferase Chain: A: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase PDBTitle: nmr structure of the peripheral-subunit binding domain of2 bacillus stearothermophilus e2p 24 c2p8tA_ not modelled 33.1 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ph0730; PDBTitle: hypothetical protein ph0730 from pyrococcus horikoshii ot3 25 c1zwvA_ not modelled 32.0 22 PDB header:transferase Chain: A: PDB Molecule:lipoamide acyltransferase component of branched- PDBTitle: solution structure of the subunit binding domain (hbsbd) of2 the human mitochondrial branched-chain alpha-ketoacid3 dehydrogenase 26 c1w4kA_ not modelled 30.2 17 PDB header:transferase Chain: A: PDB Molecule:pyruvate dehydrogenase e2; PDBTitle: peripheral-subunit binding domains from mesophilic,2 thermophilic, and hyperthermophilic bacteria fold by3 ultrafast, apparently two-state transitions 27 c1v9lA_ not modelled 27.4 29 PDB header:oxidoreductase Chain: A: PDB Molecule:glutamate dehydrogenase; PDBTitle: l-glutamate dehydrogenase from pyrobaculum islandicum2 complexed with nad 28 c3dv0I_ not modelled 26.7 20 PDB header:oxidoreductase/transferase Chain: I: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase PDBTitle: snapshots of catalysis in the e1 subunit of the pyruvate2 dehydrogenase multi-enzyme complex 29 c2eq8C_ not modelled 26.6 22 PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp 30 d1b26a1 not modelled 26.2 35 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 31 c3godA_ not modelled 26.1 17 PDB header:immune system Chain: A: PDB Molecule:cas1; PDBTitle: structural basis for dnase activity of a conserved protein2 implicated in crispr-mediated antiviral defense 32 d1eija_ not modelled 26.1 50 Fold:RuvA C-terminal domain-like Superfamily:Double-stranded DNA-binding domain Family:Double-stranded DNA-binding domain 33 c2fh0A_ not modelled 25.9 42 PDB header:unknown function Chain: A: PDB Molecule:hypothetical 16.0 kda protein in abf2-chl12 PDBTitle: nmr ensemble of the yeast saccharomyces cerevisiae protein2 ymr074cp core region 34 c2cooA_ not modelled 25.9 23 PDB header:transferase Chain: A: PDB Molecule:lipoamide acyltransferase component of branched- PDBTitle: solution structure of the e3_binding domain of2 dihydrolipoamide branched chaintransacylase 35 d1w85i_ not modelled 25.0 20 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 36 c2ek0B_ not modelled 23.8 18 PDB header:metal binding protein Chain: B: PDB Molecule:stage v sporulation protein s (spovs) related protein; PDBTitle: stage v sporolation protein s (spovs) from thermus thermophilus zinc2 form 37 d1gtma1 not modelled 23.4 29 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 38 d1v9la1 not modelled 23.1 29 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 39 c2jxnA_ not modelled 22.7 42 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein ymr074c; PDBTitle: solution structure of s. cerevisiae pdcd5-like protein ymr074cp 40 d1bvua1 not modelled 22.2 35 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 41 c2hfqA_ not modelled 21.9 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: nmr structure of protein ne1680 from nitrosomonas europaea:2 northeast structural genomics consortium target net5 42 d2hfqa1 not modelled 21.9 27 Fold:NE1680-like Superfamily:NE1680-like Family:NE1680-like 43 c2tmgD_ not modelled 21.6 35 PDB header:oxidoreductase Chain: D: PDB Molecule:protein (glutamate dehydrogenase); PDBTitle: thermotoga maritima glutamate dehydrogenase mutant s128r,2 t158e, n117r, s160e 44 d2q4qa1 not modelled 21.3 9 Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like 45 c3k8zD_ not modelled 21.0 18 PDB header:oxidoreductase Chain: D: PDB Molecule:nad-specific glutamate dehydrogenase; PDBTitle: crystal structure of gudb1 a decryptified secondary glutamate2 dehydrogenase from b. subtilis 46 c3nkdB_ not modelled 20.2 22 PDB header:immune system Chain: B: PDB Molecule:crispr-associated protein cas1; PDBTitle: structure of crisp-associated protein cas1 from escherichia coli str.2 k-12 47 d2crua1 not modelled 20.2 45 Fold:RuvA C-terminal domain-like Superfamily:Double-stranded DNA-binding domain Family:Double-stranded DNA-binding domain 48 d1h75a_ not modelled 20.2 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 49 c3aogA_ not modelled 19.9 24 PDB header:oxidoreductase Chain: A: PDB Molecule:glutamate dehydrogenase; PDBTitle: crystal structure of glutamate dehydrogenase (gdhb) from thermus2 thermophilus (glu bound form) 50 c1nr1A_ not modelled 19.6 24 PDB header:oxidoreductase Chain: A: PDB Molecule:glutamate dehydrogenase 1; PDBTitle: crystal structure of the r463a mutant of human glutamate2 dehydrogenase 51 c2bmaA_ not modelled 19.4 14 PDB header:oxidoreductase Chain: A: PDB Molecule:glutamate dehydrogenase (nadp+); PDBTitle: the crystal structure of plasmodium falciparum glutamate2 dehydrogenase, a putative target for novel antimalarial3 drugs 52 d1euza1 not modelled 19.4 24 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 53 d2bl7a1 not modelled 18.8 21 Fold:Bromodomain-like Superfamily:Bacteriocin immunity protein-like Family:EntA-Im 54 d1g7oa1 not modelled 18.5 33 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 55 d1st6a5 not modelled 18.4 8 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 56 d2ge7a1 not modelled 18.4 24 Fold:Nucleocapsid protein dimerization domain Superfamily:Nucleocapsid protein dimerization domain Family:Coronavirus nucleocapsid protein 57 d1hwxa1 not modelled 18.1 24 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 58 c3aoeC_ not modelled 17.9 24 PDB header:oxidoreductase Chain: C: PDB Molecule:glutamate dehydrogenase; PDBTitle: crystal structure of hetero-hexameric glutamate dehydrogenase from2 thermus thermophilus (leu bound form) 59 d1ryaa_ not modelled 17.3 10 Fold:Nudix Superfamily:Nudix Family:GDP-mannose mannosyl hydrolase NudD 60 c2lafA_ not modelled 17.2 22 PDB header:membrane protein Chain: A: PDB Molecule:lipoprotein 34; PDBTitle: nmr solution structure of the n-terminal domain of the e. coli2 lipoprotein bamc 61 c1bvuF_ not modelled 16.1 21 PDB header:oxidoreductase Chain: F: PDB Molecule:protein (glutamate dehydrogenase); PDBTitle: glutamate dehydrogenase from thermococcus litoralis 62 d1v43a1 not modelled 15.8 33 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 63 d2giba1 not modelled 15.5 17 Fold:Nucleocapsid protein dimerization domain Superfamily:Nucleocapsid protein dimerization domain Family:Coronavirus nucleocapsid protein 64 d1rw1a_ not modelled 15.2 31 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:ArsC-like 65 c2q4dB_ not modelled 14.9 5 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:lysine decarboxylase-like protein at5g11950; PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at5g11950 66 c2yfqA_ not modelled 14.8 17 PDB header:oxidoreductase Chain: A: PDB Molecule:nad-specific glutamate dehydrogenase; PDBTitle: crystal structure of glutamate dehydrogenase from2 peptoniphilus asaccharolyticus 67 c2qgoA_ not modelled 14.8 33 PDB header:biosynthetic protein Chain: A: PDB Molecule:putative fe-s biosynthesis protein; PDBTitle: crystal structure of a putative fe-s biosynthesis protein from2 lactobacillus acidophilus 68 c1zunA_ not modelled 14.6 7 PDB header:transferase Chain: A: PDB Molecule:sulfate adenylyltransferase subunit 2; PDBTitle: crystal structure of a gtp-regulated atp sulfurylase2 heterodimer from pseudomonas syringae 69 d2fvta1 not modelled 13.6 11 Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like 70 d1ydha_ not modelled 12.3 5 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 71 c3ebqA_ not modelled 11.7 9 PDB header:hydrolase Chain: A: PDB Molecule:molecule: pppde1 (permuted papain fold PDBTitle: crystal structure of human pppde1 72 d2p2ea1 not modelled 11.6 25 Fold:HesB-like domain Superfamily:HesB-like domain Family:HesB-like domain 73 d1abaa_ not modelled 11.3 31 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 74 c2wmyH_ not modelled 11.2 21 PDB header:hydrolase Chain: H: PDB Molecule:putative acid phosphatase wzb; PDBTitle: crystal structure of the tyrosine phosphatase wzb from2 escherichia coli k30 in complex with sulphate. 75 c3lfxE_ not modelled 10.6 18 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:uncharacterized protein; PDBTitle: structure of tm1797, a cas1 protein from thermotoga maritima 76 d1aw9a1 not modelled 10.5 13 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 77 d2cjra1 not modelled 10.3 14 Fold:Nucleocapsid protein dimerization domain Superfamily:Nucleocapsid protein dimerization domain Family:Coronavirus nucleocapsid protein 78 d2dlka1 not modelled 10.1 43 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 79 d1c4ka3 not modelled 10.0 4 Fold:Ornithine decarboxylase C-terminal domain Superfamily:Ornithine decarboxylase C-terminal domain Family:Ornithine decarboxylase C-terminal domain 80 d1oywa1 not modelled 10.0 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:RecQ helicase DNA-binding domain-like 81 d1r7ha_ not modelled 9.9 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 82 c1iq8B_ not modelled 9.7 22 PDB header:transferase Chain: B: PDB Molecule:archaeosine trna-guanine transglycosylase; PDBTitle: crystal structure of archaeosine trna-guanine2 transglycosylase from pyrococcus horikoshii 83 c1y88A_ not modelled 9.4 4 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein af1548; PDBTitle: crystal structure of protein of unknown function af1548 84 d1igna2 not modelled 9.4 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:DNA-binding domain of rap1 85 d16vpa_ not modelled 9.3 22 Fold:Conserved core of transcriptional regulatory protein vp16 Superfamily:Conserved core of transcriptional regulatory protein vp16 Family:Conserved core of transcriptional regulatory protein vp16 86 c3gkxB_ not modelled 9.3 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative arsc family related protein; PDBTitle: crystal structure of putative arsc family related protein from2 bacteroides fragilis 87 d1in4a1 not modelled 9.0 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Helicase DNA-binding domain 88 d1ixsb1 not modelled 8.8 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Helicase DNA-binding domain 89 d1zuna1 not modelled 8.7 9 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PAPS reductase-like 90 c3e0sA_ not modelled 8.6 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from2 chlorobium tepidum 91 c3f0iA_ not modelled 8.4 25 PDB header:oxidoreductase Chain: A: PDB Molecule:arsenate reductase; PDBTitle: arsenate reductase from vibrio cholerae. 92 c2yzsB_ not modelled 8.3 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of uncharacterized conserved protein from2 aquifex aeolicus 93 d1ixrc1 not modelled 8.0 31 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Helicase DNA-binding domain 94 d1kyha_ not modelled 7.9 30 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:YjeF C-terminal domain-like 95 d1a4ia2 not modelled 7.8 10 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Tetrahydrofolate dehydrogenase/cyclohydrolase 96 c3edpB_ not modelled 7.6 7 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:lin2111 protein; PDBTitle: the crystal structure of the protein lin2111 (functionally unknown)2 from listeria innocua clip11262 97 d1j9ba_ not modelled 7.5 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:ArsC-like 98 d1t1va_ not modelled 7.4 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:SH3BGR (SH3-binding, glutamic acid-rich protein-like) 99 c3pv9D_ not modelled 7.4 17 PDB header:immune system Chain: D: PDB Molecule:putative uncharacterized protein ph1245; PDBTitle: structure of ph1245, a cas1 from pyrococcus horikoshii

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0