Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	Q	P	K	R	T	K	F	R	K	M	H	K	G	R	N	R	G	L	A	Q	G	T	D	V	S	F	G	S	F	G	L	K	A	V	G	R	G	R	L	T	A	R	Q	I	E	A	A	R	R	A	M	T	R	A	V	K	R	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?															?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	K	I	W	I	R	V	F	P	D	K	P	I	T	E	K	P	L	A	V	R	M	G	K	G	K	G	N	V	E	Y	W	V	A	L	I	Q	P	G	K	V	L	Y	E	M	D	G	V	P	E	E	L	A	R	E	A	F	K	L	A
Secondary structure
SS confidence
Disorder																?		?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Sequence		A	A	K	L	P	I	K	T	T	F	V	T	K	T	V	M
Secondary structure
SS confidence
Disorder														?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3bbo chain O Region: 1 - 133 Aligned: 133 Modelled: 133 Confidence: 100.0% Identity: 54% PDB header:ribosome Chain: O: PDB Molecule:ribosomal protein l16; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome Phyre2 PDB 2gyc chain K domain 1 Region: 3 - 133 Aligned: 131 Modelled: 131 Confidence: 100.0% Identity: 100% Fold: alpha/beta-Hammerhead Superfamily: Ribosomal protein L16p/L10e Family: Ribosomal protein L16p Phyre2 PDB 2j01 chain Q domain 1 Region: 6 - 136 Aligned: 131 Modelled: 131 Confidence: 100.0% Identity: 55% Fold: alpha/beta-Hammerhead Superfamily: Ribosomal protein L16p/L10e Family: Ribosomal protein L16p Phyre2 PDB 2zjr chain J domain 1 Region: 5 - 136 Aligned: 132 Modelled: 132 Confidence: 100.0% Identity: 54% Fold: alpha/beta-Hammerhead Superfamily: Ribosomal protein L16p/L10e Family: Ribosomal protein L16p Phyre2 PDB 2ftc chain I Region: 18 - 129 Aligned: 112 Modelled: 112 Confidence: 100.0% Identity: 32% PDB header:ribosome Chain: I: PDB Molecule:mitochondrial ribosomal protein l16; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome Phyre2 PDB 2zkr chain H Region: 4 - 131 Aligned: 128 Modelled: 128 Confidence: 100.0% Identity: 23% PDB header:ribosomal protein/rna Chain: H: PDB Molecule:rna expansion segment es12; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 1jj2 chain H Region: 4 - 134 Aligned: 129 Modelled: 131 Confidence: 100.0% Identity: 20% Fold: alpha/beta-Hammerhead Superfamily: Ribosomal protein L16p/L10e Family: Ribosomal protein L10e Phyre2 PDB 1ffk chain F Region: 3 - 134 Aligned: 131 Modelled: 132 Confidence: 100.0% Identity: 18% Fold: alpha/beta-Hammerhead Superfamily: Ribosomal protein L16p/L10e Family: Ribosomal protein L10e Phyre2 PDB 1vqo chain H domain 1 Region: 4 - 130 Aligned: 125 Modelled: 127 Confidence: 100.0% Identity: 20% Fold: alpha/beta-Hammerhead Superfamily: Ribosomal protein L16p/L10e Family: Ribosomal protein L10e Phyre2 PDB 1s1i chain I Region: 4 - 131 Aligned: 128 Modelled: 128 Confidence: 100.0% Identity: 19% PDB header:ribosome Chain: I: PDB Molecule:60s ribosomal protein l10; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. Phyre2 PDB 4a1a chain H Region: 4 - 132 Aligned: 127 Modelled: 129 Confidence: 100.0% Identity: 24% PDB header:ribosome Chain: H: PDB Molecule:60s ribosomal protein l10; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. Phyre2 PDB 3iz5 chain I Region: 33 - 131 Aligned: 99 Modelled: 99 Confidence: 100.0% Identity: 23% PDB header:ribosome Chain: I: PDB Molecule:60s ribosomal protein l10 (l10e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Phyre2 PDB 3izc chain I Region: 33 - 132 Aligned: 100 Modelled: 100 Confidence: 99.9% Identity: 20% PDB header:ribosome Chain: I: PDB Molecule:60s ribosomal protein rpl10 (l10e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome Phyre2 PDB 2pa2 chain A domain 1 Region: 33 - 131 Aligned: 79 Modelled: 79 Confidence: 99.7% Identity: 25% Fold: alpha/beta-Hammerhead Superfamily: Ribosomal protein L16p/L10e Family: Ribosomal protein L10e Phyre2 PDB 2q9v chain A Region: 87 - 135 Aligned: 49 Modelled: 49 Confidence: 63.4% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz domain- PDBTitle: crystal structure of the c890s mutant of the 4th pdz domain of human2 membrane associated guanylate kinase Phyre2 PDB 1x45 chain A Region: 87 - 134 Aligned: 48 Modelled: 48 Confidence: 50.3% Identity: 17% PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:amyloid beta (a4) precursor protein-binding, PDBTitle: solution structure of the first pdz domain of amyloid beta2 a4 precursor protein-binding family a, member 1 Phyre2 PDB 1x45 chain A domain 1 Region: 86 - 131 Aligned: 46 Modelled: 46 Confidence: 48.3% Identity: 17% Fold: PDZ domain-like Superfamily: PDZ domain-like Family: PDZ domain Phyre2 PDB 2yt7 chain A Region: 87 - 136 Aligned: 50 Modelled: 50 Confidence: 45.1% Identity: 16% PDB header:protein transport Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding family PDBTitle: solution structure of the pdz domain of amyloid beta a42 precursor protein-binding family a member 3 Phyre2 PDB 1v6b chain A Region: 87 - 131 Aligned: 45 Modelled: 45 Confidence: 40.8% Identity: 18% Fold: PDZ domain-like Superfamily: PDZ domain-like Family: PDZ domain Phyre2 PDB 2css chain A domain 1 Region: 87 - 134 Aligned: 47 Modelled: 48 Confidence: 40.5% Identity: 15% Fold: PDZ domain-like Superfamily: PDZ domain-like Family: PDZ domain Phyre2 1 c3bboO_ 2 d2gyck1 3 d2j01q1 4 d2zjrj1 5 c2ftcI_ 6 c2zkrh_ 7 d1jj2h_ 8 d1ffkf_ 9 d1vqoh1 10 c1s1iI_ 11 c4a1aH_ 12 c3iz5I_ 13 c3izcI_ 14 d2pa2a1 15 c2q9vA_ 16 c1x45A_ 17 d1x45a1 18 c2yt7A_ 19 d1v6ba_ 20 d2cssa1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3bboO_ 100.0 54 PDB header:ribosome Chain: O: PDB Molecule:ribosomal protein l16; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 2 d2gyck1 100.0 100 Fold:alpha/beta-Hammerhead Superfamily:Ribosomal protein L16p/L10e Family:Ribosomal protein L16p 3 d2j01q1 100.0 55 Fold:alpha/beta-Hammerhead Superfamily:Ribosomal protein L16p/L10e Family:Ribosomal protein L16p 4 d2zjrj1 100.0 54 Fold:alpha/beta-Hammerhead Superfamily:Ribosomal protein L16p/L10e Family:Ribosomal protein L16p 5 c2ftcI_ 100.0 32 PDB header:ribosome Chain: I: PDB Molecule:mitochondrial ribosomal protein l16; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 6 c2zkrh_ 100.0 23 PDB header:ribosomal protein/rna Chain: H: PDB Molecule:rna expansion segment es12; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 7 d1jj2h_ 100.0 20 Fold:alpha/beta-Hammerhead Superfamily:Ribosomal protein L16p/L10e Family:Ribosomal protein L10e 8 d1ffkf_ 100.0 18 Fold:alpha/beta-Hammerhead Superfamily:Ribosomal protein L16p/L10e Family:Ribosomal protein L10e 9 d1vqoh1 100.0 20 Fold:alpha/beta-Hammerhead Superfamily:Ribosomal protein L16p/L10e Family:Ribosomal protein L10e 10 c1s1iI_ 100.0 19 PDB header:ribosome Chain: I: PDB Molecule:60s ribosomal protein l10; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 11 c4a1aH_ 100.0 24 PDB header:ribosome Chain: H: PDB Molecule:60s ribosomal protein l10; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. 12 c3iz5I_ 100.0 23 PDB header:ribosome Chain: I: PDB Molecule:60s ribosomal protein l10 (l10e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 13 c3izcI_ 99.9 20 PDB header:ribosome Chain: I: PDB Molecule:60s ribosomal protein rpl10 (l10e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 14 d2pa2a1 99.7 25 Fold:alpha/beta-Hammerhead Superfamily:Ribosomal protein L16p/L10e Family:Ribosomal protein L10e 15 c2q9vA_ 63.4 18 PDB header:transferase Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz domain- PDBTitle: crystal structure of the c890s mutant of the 4th pdz domain of human2 membrane associated guanylate kinase 16 c1x45A_ 50.3 17 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:amyloid beta (a4) precursor protein-binding, PDBTitle: solution structure of the first pdz domain of amyloid beta2 a4 precursor protein-binding family a, member 1 17 d1x45a1 48.3 17 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 18 c2yt7A_ 45.1 16 PDB header:protein transport Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding family PDBTitle: solution structure of the pdz domain of amyloid beta a42 precursor protein-binding family a member 3 19 d1v6ba_ 40.8 18 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 20 d2cssa1 40.5 15 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 21 c2i04B_ not modelled 35.5 9 PDB header:peptide binding protein Chain: B: PDB Molecule:membrane-associated guanylate kinase, ww and pdz PDBTitle: x-ray crystal structure of magi-1 pdz1 bound to the c-2 terminal peptide of hpv18 e6 22 d1uepa_ not modelled 35.3 20 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 23 d2f0aa1 not modelled 33.4 18 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 24 d1rzxa_ not modelled 33.1 16 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 25 c1z87A_ not modelled 31.3 16 PDB header:protein binding Chain: A: PDB Molecule:alpha-1-syntrophin; PDBTitle: solution structure of the split ph-pdz supramodule of alpha-2 syntrophin 26 c1u38A_ not modelled 30.3 18 PDB header:protein transport Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding, PDBTitle: auto-inhibition mechanism of x11s/mints family scaffold2 proteins revealed by the closed conformation of the tandem3 pdz domains 27 c2ehrA_ not modelled 28.8 21 PDB header:structural protein Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the sixth pdz domain of human inad-2 like protein 28 d1wi4a1 not modelled 28.7 20 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 29 d2byga1 not modelled 28.7 21 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 30 c2ogpA_ not modelled 28.1 12 PDB header:signaling protein Chain: A: PDB Molecule:partitioning-defective 3 homolog; PDBTitle: solution structure of the second pdz domain of par-3 31 c3cyyA_ not modelled 27.8 18 PDB header:peptide binding protein Chain: A: PDB Molecule:tight junction protein zo-1; PDBTitle: the crystal structure of zo-1 pdz2 in complex with the cx43 peptide 32 d1ry4a_ not modelled 27.3 16 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 33 d1nf3c_ not modelled 26.7 15 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 34 c1p1eA_ not modelled 26.6 11 PDB header:protein binding Chain: A: PDB Molecule:glutamate receptor interacting protein; PDBTitle: structural insights into the inter-domain chaperoning of2 tandem pdz domains in glutamate receptor interacting3 proteins 35 d1vb7a_ not modelled 25.9 17 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 36 d1ihja_ not modelled 25.7 14 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 37 c2dmzA_ not modelled 25.5 21 PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the third pdz domain of human inad-2 like protein 38 d1ozia_ not modelled 25.0 14 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 39 c2dc2A_ not modelled 24.9 11 PDB header:structural protein Chain: A: PDB Molecule:golgi associated pdz and coiled-coil motif PDBTitle: solution structure of pdz domain 40 d1wf8a1 not modelled 24.7 21 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 41 c2gzvA_ not modelled 24.0 9 PDB header:signaling protein Chain: A: PDB Molecule:prkca-binding protein; PDBTitle: the cystal structure of the pdz domain of human pick1 (casp target) 42 d1i16a_ not modelled 24.0 21 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:Interleukin 16 43 d1uewa_ not modelled 23.8 17 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 44 c2jreA_ not modelled 23.8 16 PDB header:de novo protein Chain: A: PDB Molecule:c60-1 pdz domain peptide; PDBTitle: c60-1, a pdz domain designed using statistical coupling2 analysis 45 c2komA_ not modelled 23.7 13 PDB header:signaling protein Chain: A: PDB Molecule:partitioning defective 3 homolog; PDBTitle: solution structure of humar par-3b pdz2 (residues 451-549) 46 d1p1da2 not modelled 23.1 20 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 47 d1vq3a_ not modelled 23.0 31 Fold:PurS-like Superfamily:PurS-like Family:PurS subunit of FGAM synthetase 48 d1whaa_ not modelled 22.7 19 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 49 c1u37A_ not modelled 22.7 18 PDB header:protein transport Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding, PDBTitle: auto-inhibition mechanism of x11s/mints family scaffold2 proteins revealed by the closed conformation of the tandem3 pdz domains 50 d1p1da1 not modelled 22.6 11 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 51 d1wjla_ not modelled 22.6 24 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 52 d1qava_ not modelled 22.4 14 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 53 d2fcfa1 not modelled 22.2 23 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 54 d1gtda_ not modelled 22.1 14 Fold:PurS-like Superfamily:PurS-like Family:PurS subunit of FGAM synthetase 55 d1rgwa_ not modelled 22.0 21 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 56 c3l4fD_ not modelled 21.7 29 PDB header:signaling protein/protein binding Chain: D: PDB Molecule:sh3 and multiple ankyrin repeat domains protein PDBTitle: crystal structure of betapix coiled-coil domain and shank2 pdz complex 57 c2osgB_ not modelled 21.3 16 PDB header:cell adhesion Chain: B: PDB Molecule:tight junction protein zo-2; PDBTitle: solution structure and binding property of the domain-2 swapped dimer of zo2pdz2 58 c3b76A_ not modelled 21.2 24 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase lnx; PDBTitle: crystal structure of the third pdz domain of human ligand-of-numb2 protein-x (lnx1) in complex with the c-terminal peptide from the3 coxsackievirus and adenovirus receptor 59 d1qlca_ not modelled 21.0 23 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 60 c2k1zA_ not modelled 21.0 13 PDB header:signaling protein Chain: A: PDB Molecule:partitioning-defective 3 homolog; PDBTitle: solution structure of par-3 pdz3 61 c2zw2B_ not modelled 20.4 24 PDB header:ligase Chain: B: PDB Molecule:putative uncharacterized protein sts178; PDBTitle: crystal structure of formylglycinamide ribonucleotide amidotransferase2 iii from sulfolobus tokodaii (stpurs) 62 c2iwqA_ not modelled 20.4 23 PDB header:signaling protein Chain: A: PDB Molecule:multiple pdz domain protein; PDBTitle: 7th pdz domain of multiple pdz domain protein mpdz 63 c2edvA_ not modelled 20.0 22 PDB header:protein binding Chain: A: PDB Molecule:ferm and pdz domain-containing protein 1; PDBTitle: solution structure of the pdz domain from human ferm and2 pdz domain containing 1 64 c2xkxB_ not modelled 19.7 18 PDB header:structural protein Chain: B: PDB Molecule:disks large homolog 4; PDBTitle: single particle analysis of psd-95 in negative stain 65 d1wg6a_ not modelled 19.6 15 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 66 c3eggC_ not modelled 19.3 27 PDB header:hydrolase Chain: C: PDB Molecule:spinophilin; PDBTitle: crystal structure of a complex between protein phosphatase 1 alpha2 (pp1) and the pp1 binding and pdz domains of spinophilin 67 c2iwnA_ not modelled 19.3 19 PDB header:signaling protein Chain: A: PDB Molecule:multiple pdz domain protein; PDBTitle: 3rd pdz domain of multiple pdz domain protein mpdz (casp2 target) 68 d2fnea1 not modelled 18.9 16 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 69 d1um7a_ not modelled 18.8 23 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 70 c2dkrA_ not modelled 18.7 25 PDB header:protein transport Chain: A: PDB Molecule:lin-7 homolog b; PDBTitle: solution structure of the pdz domain from human lin-72 homolog b 71 c2jikB_ not modelled 18.5 14 PDB header:membrane protein Chain: B: PDB Molecule:synaptojanin-2 binding protein; PDBTitle: crystal structure of pdz domain of synaptojanin-2 binding2 protein 72 d1uhpa_ not modelled 18.5 21 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 73 c2vwrA_ not modelled 18.1 12 PDB header:protein-binding Chain: A: PDB Molecule:ligand of numb protein x 2; PDBTitle: crystal structure of the second pdz domain of numb-binding2 protein 2 74 c2edpA_ not modelled 18.0 16 PDB header:structural protein Chain: A: PDB Molecule:shroom family member 4; PDBTitle: solution structure of the pdz domain from human shroom2 family member 4 75 d1wfva_ not modelled 17.5 14 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 76 c3hpmA_ not modelled 17.0 7 PDB header:protein binding Chain: A: PDB Molecule:protein interacting with prkca 1; PDBTitle: oxidized dimeric pick1 pdz c46g mutant in complex with the carboxyl2 tail peptide of glur2 77 c2q3gA_ not modelled 16.8 18 PDB header:structural genomics Chain: A: PDB Molecule:pdz and lim domain protein 7; PDBTitle: structure of the pdz domain of human pdlim7 bound to a c-2 terminal extension from human beta-tropomyosin 78 c2fneB_ not modelled 16.8 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:multiple pdz domain protein; PDBTitle: the crystal structure of the 13th pdz domain of mpdz 79 c3o46A_ not modelled 16.0 21 PDB header:protein binding Chain: A: PDB Molecule:maguk p55 subfamily member 7; PDBTitle: crystal structure of the pdz domain of mpp7 80 c2jilA_ not modelled 15.6 22 PDB header:membrane protein Chain: A: PDB Molecule:glutamate receptor interacting protein-1; PDBTitle: crystal structure of 2nd pdz domain of glutamate receptor2 interacting protein-1 (grip1) 81 d1d5ga_ not modelled 15.5 14 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 82 c2opgB_ not modelled 15.5 9 PDB header:structural protein Chain: B: PDB Molecule:multiple pdz domain protein; PDBTitle: the crystal structure of the 10th pdz domain of mpdz 83 d1q3oa_ not modelled 15.4 24 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 84 d1um1a_ not modelled 15.4 14 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 85 c2pkuA_ not modelled 15.3 7 PDB header:protein binding Chain: A: PDB Molecule:prkca-binding protein; PDBTitle: solution structure of pick1 pdz in complex with the2 carboxyl tail peptide of glur2 86 d1wfga_ not modelled 15.3 24 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 87 d1zoka1 not modelled 15.1 19 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 88 d1ky9b2 not modelled 14.9 12 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:HtrA-like serine proteases 89 d1x5ra1 not modelled 14.8 18 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 90 c2ka9A_ not modelled 14.8 23 PDB header:cell adhesion Chain: A: PDB Molecule:disks large homolog 4; PDBTitle: solution structure of psd-95 pdz12 complexed with cypin2 peptide 91 d1qpoa2 not modelled 14.8 15 Fold:alpha/beta-Hammerhead Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like Family:NadC N-terminal domain-like 92 c2dazA_ not modelled 14.8 16 PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the 7th pdz domain of inad-like2 protein 93 d2i0xa1 not modelled 14.6 15 Fold:Ferredoxin-like Superfamily:TTP0101/SSO1404-like Family:TTP0101/SSO1404-like 94 c2qv6D_ not modelled 13.9 11 PDB header:hydrolase Chain: D: PDB Molecule:gtp cyclohydrolase iii; PDBTitle: gtp cyclohydrolase iii from m. jannaschii (mj0145)2 complexed with gtp and metal ions 95 d1v62a_ not modelled 13.8 16 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 96 d1t2ma1 not modelled 13.7 21 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 97 d1rgra_ not modelled 13.5 16 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 98 d2fe5a1 not modelled 13.3 21 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 99 c2wdtA_ not modelled 13.2 24 PDB header:hydrolase/protein binding Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase l3; PDBTitle: crystal structure of plasmodium falciparum uchl3 in complex2 with the suicide inhibitor ubvme

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0