Email l.a.kelley@imperial.ac.uk Description P22525 Date Thu Jan 5 11:38:56 GMT 2012 Unique Job ID b49ab12f3f68dcc3

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2hklB_ 99.6 21 PDB header:transferase Chain: B: PDB Molecule:l,d-transpeptidase; PDBTitle: crystal structure of enterococcus faecium l,d-2 transpeptidase c442s mutant 2 d1zata1 99.5 24 Fold:L,D-transpeptidase catalytic domain-like Superfamily:L,D-transpeptidase catalytic domain-like Family:L,D-transpeptidase catalytic domain-like 3 d1lbua1 99.2 34 Fold:PGBD-like Superfamily:PGBD-like Family:Peptidoglycan binding domain, PGBD 4 c1y7mB_ 99.2 29 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein bsu14040; PDBTitle: crystal structure of the b. subtilis ykud protein at 2 a2 resolution 5 c1lbuA_ 99.1 34 PDB header:hydrolase Chain: A: PDB Molecule:muramoyl-pentapeptide carboxypeptidase; PDBTitle: hydrolase metallo (zn) dd-peptidase 6 c3bkhA_ 99.1 29 PDB header:hydrolase Chain: A: PDB Molecule:lytic transglycosylase; PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144 7 d1y7ma1 99.1 30 Fold:L,D-transpeptidase catalytic domain-like Superfamily:L,D-transpeptidase catalytic domain-like Family:L,D-transpeptidase catalytic domain-like 8 c2bh7A_ 98.2 19 PDB header:hydrolase Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase; PDBTitle: crystal structure of a semet derivative of amid at 2.22 angstroms 9 c1l6jA_ 97.3 26 PDB header:hydrolase Chain: A: PDB Molecule:matrix metalloproteinase-9; PDBTitle: crystal structure of human matrix metalloproteinase mmp92 (gelatinase b). 10 d1eaka1 97.1 16 Fold:PGBD-like Superfamily:PGBD-like Family:MMP N-terminal domain 11 d2ikba1 97.0 28 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:NMB1012-like 12 d1slma1 97.0 18 Fold:PGBD-like Superfamily:PGBD-like Family:MMP N-terminal domain 13 c1slmA_ 97.0 18 PDB header:hydrolase Chain: A: PDB Molecule:stromelysin-1; PDBTitle: crystal structure of fibroblast stromelysin-1: the c-truncated human2 proenzyme 14 d1su3a1 96.8 22 Fold:PGBD-like Superfamily:PGBD-like Family:MMP N-terminal domain 15 c1su3A_ 96.7 22 PDB header:hydrolase Chain: A: PDB Molecule:interstitial collagenase; PDBTitle: x-ray structure of human prommp-1: new insights into2 collagenase action 16 c1eakA_ 96.5 22 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:72 kda type iv collagenase; PDBTitle: catalytic domain of prommp-2 e404q mutant 17 d2nr7a1 96.3 21 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:NMB1012-like 18 d1l6ja1 96.2 23 Fold:PGBD-like Superfamily:PGBD-like Family:MMP N-terminal domain 19 c1gxdA_ 93.0 23 PDB header:hydrolase Chain: A: PDB Molecule:72 kda type iv collagenase; PDBTitle: prommp-2/timp-2 complex 20 c3a05A_ 74.1 24 PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from2 hyperthermophilic archaeon, aeropyrum pernix k1 complex3 with tryptophan 21 d2bgxa1 not modelled 67.0 20 Fold:PGBD-like Superfamily:PGBD-like Family:Peptidoglycan binding domain, PGBD 22 d2oo3a1 not modelled 49.4 27 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:LPG1296-like 23 c2rjbD_ not modelled 45.2 23 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein ydcj (sf1787)2 from shigella flexneri which includes domain duf1338.3 northeast structural genomics consortium target sfr276 24 c2juoA_ not modelled 40.4 33 PDB header:transcription Chain: A: PDB Molecule:ga-binding protein alpha chain; PDBTitle: gabpa ost domain 25 c3n9iA_ not modelled 38.2 15 PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from yersinia pestis2 co92 26 c1wsuA_ not modelled 35.6 12 PDB header:translation/rna Chain: A: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: c-terminal domain of elongation factor selb complexed with2 secis rna 27 d2ns0a1 not modelled 34.4 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:RHA1 ro06458-like 28 d1r1ga_ not modelled 30.2 67 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Short-chain scorpion toxins 29 c1r1gB_ not modelled 30.2 67 PDB header:toxin Chain: B: PDB Molecule:neurotoxin bmk37; PDBTitle: crystal structure of the scorpion toxin bmbkttx1 30 c1r1gA_ not modelled 30.2 67 PDB header:toxin Chain: A: PDB Molecule:neurotoxin bmk37; PDBTitle: crystal structure of the scorpion toxin bmbkttx1 31 d2d69a1 not modelled 29.3 19 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 32 c2d69B_ not modelled 25.9 19 PDB header:lyase Chain: B: PDB Molecule:ribulose bisphosphate carboxylase; PDBTitle: crystal structure of the complex of sulfate ion and octameric2 ribulose-1,5-bisphosphate carboxylase/oxygenase (rubisco) from3 pyrococcus horikoshii ot3 (form-2 crystal) 33 c2r5kE_ not modelled 25.8 27 PDB header:viral protein Chain: E: PDB Molecule:major capsid protein l1; PDBTitle: pentamer structure of major capsid protein l1 of human2 papilloma virus type 11 34 c3phuA_ not modelled 24.5 28 PDB header:hydrolase Chain: A: PDB Molecule:rna-directed rna polymerase l; PDBTitle: otu domain of crimean congo hemorrhagic fever virus 35 c2r5iL_ not modelled 23.8 24 PDB header:viral protein Chain: L: PDB Molecule:l1 protein; PDBTitle: pentamer structure of major capsid protein l1 of human2 papilloma virus type 18 36 c3pt2A_ not modelled 23.4 30 PDB header:hydrolase/protein binding Chain: A: PDB Molecule:rna polymerase; PDBTitle: structure of a viral otu domain protease bound to ubiquitin 37 c1dzlA_ not modelled 23.1 27 PDB header:virus Chain: A: PDB Molecule:late major capsid protein l1; PDBTitle: l1 protein of human papillomavirus 16 38 d1dzla_ not modelled 23.1 27 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Group I dsDNA viruses Family:Papovaviridae-like VP 39 c3qm2A_ not modelled 22.7 20 PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: 2.25 angstrom crystal structure of phosphoserine aminotransferase2 (serc) from salmonella enterica subsp. enterica serovar typhimurium 40 c3jxeB_ not modelled 22.1 24 PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of pyrococcus horikoshii tryptophanyl-trna2 synthetase in complex with trpamp 41 c3hv0A_ not modelled 21.6 20 PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: tryptophanyl-trna synthetase from cryptosporidium parvum 42 c2yy5C_ not modelled 21.4 19 PDB header:ligase Chain: C: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from mycoplasma2 pneumoniae 43 d1i6la_ not modelled 20.8 16 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 44 c2lafA_ not modelled 20.4 14 PDB header:membrane protein Chain: A: PDB Molecule:lipoprotein 34; PDBTitle: nmr solution structure of the n-terminal domain of the e. coli2 lipoprotein bamc 45 c2zviB_ not modelled 20.2 20 PDB header:isomerase Chain: B: PDB Molecule:2,3-diketo-5-methylthiopentyl-1-phosphate PDBTitle: crystal structure of 2,3-diketo-5-methylthiopentyl-1-2 phosphate enolase from bacillus subtilis 46 d1ykwa1 not modelled 20.0 12 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 47 d2p0la1 not modelled 19.5 20 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:LplA-like 48 c3iyjE_ not modelled 19.2 18 PDB header:virus Chain: E: PDB Molecule:major capsid protein l1; PDBTitle: bovine papillomavirus type 1 outer capsid 49 d1ej7l1 not modelled 18.2 17 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 50 c2qygC_ not modelled 17.8 16 PDB header:unknown function Chain: C: PDB Molecule:ribulose bisphosphate carboxylase-like protein 2; PDBTitle: crystal structure of a rubisco-like protein rlp2 from rhodopseudomonas2 palustris 51 c2j5bA_ not modelled 17.6 19 PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: structure of the tyrosyl trna synthetase from acanthamoeba2 polyphaga mimivirus complexed with tyrosynol 52 c2ip1A_ not modelled 17.2 34 PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure analysis of s. cerevisiae tryptophanyl trna2 synthetase 53 c3elyA_ not modelled 17.1 25 PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: wesselsbron virus methyltransferase in complex with adohcy 54 c1gehE_ not modelled 16.7 12 PDB header:lyase Chain: E: PDB Molecule:ribulose-1,5-bisphosphate carboxylase/oxygenase; PDBTitle: crystal structure of archaeal rubisco (ribulose 1,5-bisphosphate2 carboxylase/oxygenase) 55 d3ci0j1 not modelled 16.5 19 Fold:Pili subunits Superfamily:Pili subunits Family:EpsJ-like 56 c2xvsA_ not modelled 16.4 21 PDB header:antitumor protein Chain: A: PDB Molecule:tetratricopeptide repeat protein 5; PDBTitle: crystal structure of human ttc5 (strap) c-terminal ob2 domain 57 c1telA_ not modelled 16.4 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ribulose bisphosphate carboxylase, large subunit; PDBTitle: crystal structure of a rubisco-like protein from chlorobium2 tepidum 58 c2oxtC_ not modelled 16.2 28 PDB header:viral protein Chain: C: PDB Molecule:nucleoside-2'-o-methyltransferase; PDBTitle: crystal structure of meaban virus nucleoside-2'-o-2 methyltransferase 59 d1geha1 not modelled 16.1 12 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 60 d1wuua1 not modelled 16.0 26 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:GHMP Kinase, N-terminal domain 61 c2plyB_ not modelled 15.8 12 PDB header:translation/rna Chain: B: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: structure of the mrna binding fragment of elongation factor2 selb in complex with secis rna. 62 d1rbla1 not modelled 15.8 17 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 63 d1pgsa2 not modelled 15.4 26 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:PHM/PNGase F Family:Glycosyl-asparaginase 64 d1iufa2 not modelled 14.4 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Centromere-binding 65 c2i6oA_ not modelled 14.2 18 PDB header:hydrolase Chain: A: PDB Molecule:sulfolobus solfataricus protein tyrosine PDBTitle: crystal structure of the complex of the archaeal sulfolobus2 ptp-fold phosphatase with phosphopeptides n-g-(p)y-k-n 66 d1vlra2 not modelled 13.5 24 Fold:mRNA decapping enzyme DcpS N-terminal domain Superfamily:mRNA decapping enzyme DcpS N-terminal domain Family:mRNA decapping enzyme DcpS N-terminal domain 67 c1zswA_ not modelled 13.2 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:glyoxalase family protein; PDBTitle: crystal structure of bacillus cereus metallo protein from glyoxalase2 family 68 c3nwrA_ not modelled 13.2 16 PDB header:lyase Chain: A: PDB Molecule:a rubisco-like protein; PDBTitle: crystal structure of a rubisco-like protein from burkholderia fungorum 69 c3nk4B_ not modelled 12.8 25 PDB header:cell adhesion Chain: B: PDB Molecule:zona pellucida 3; PDBTitle: crystal structure of full-length sperm receptor zp3 at 2.0 a2 resolution 70 c2quiB_ not modelled 12.3 20 PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structures of human tryptophanyl-trna synthetase in2 complex with tryptophanamide and atp 71 c3hzrD_ not modelled 12.1 26 PDB header:ligase Chain: D: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: tryptophanyl-trna synthetase homolog from entamoeba histolytica 72 c1r6uB_ not modelled 11.9 24 PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of an active fragment of human tryptophanyl-trna2 synthetase with cytokine activity 73 d2p5ia1 not modelled 11.8 19 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:LplA-like 74 d2z15a1 not modelled 11.7 16 Fold:BTG domain-like Superfamily:BTG domain-like Family:BTG domain-like 75 d8ruca1 not modelled 11.7 20 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 76 d3bl9a2 not modelled 11.4 25 Fold:mRNA decapping enzyme DcpS N-terminal domain Superfamily:mRNA decapping enzyme DcpS N-terminal domain Family:mRNA decapping enzyme DcpS N-terminal domain 77 c2gezE_ not modelled 11.4 11 PDB header:hydrolase Chain: E: PDB Molecule:l-asparaginase alpha subunit; PDBTitle: crystal structure of potassium-independent plant asparaginase 78 c3sz3A_ not modelled 11.3 12 PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from vibrio cholerae2 with an endogenous tryptophan 79 d3e9va1 not modelled 11.1 23 Fold:BTG domain-like Superfamily:BTG domain-like Family:BTG domain-like 80 c3focB_ not modelled 11.1 26 PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: tryptophanyl-trna synthetase from giardia lamblia 81 c1rcxH_ not modelled 11.0 17 PDB header:lyase (carbon-carbon) Chain: H: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase; PDBTitle: non-activated spinach rubisco in complex with its substrate2 ribulose-1,5-bisphosphate 82 d1atga_ not modelled 10.7 15 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 83 c1vqzA_ not modelled 10.7 15 PDB header:ligase Chain: A: PDB Molecule:lipoate-protein ligase, putative; PDBTitle: crystal structure of a putative lipoate-protein ligase a (sp_1160)2 from streptococcus pneumoniae tigr4 at 1.99 a resolution 84 d1bwva1 not modelled 10.5 25 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 85 c2yfnA_ not modelled 10.4 18 PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase-sucrose kinase agask; PDBTitle: galactosidase domain of alpha-galactosidase-sucrose kinase,2 agask 86 c1bqfA_ not modelled 10.0 57 PDB header:hormone/growth factor Chain: A: PDB Molecule:protein (growth-blocking peptide); PDBTitle: growth-blocking peptide (gbp) from pseudaletia separata 87 c2kimA_ not modelled 9.7 17 PDB header:transferase Chain: A: PDB Molecule:o6-methylguanine-dna methyltransferase; PDBTitle: 1.7-mm microcryoprobe solution nmr structure of an o6-2 methylguanine dna methyltransferase family protein from3 vibrio parahaemolyticus. northeast structural genomics4 consortium target vpr247. 88 c3qfwB_ not modelled 9.6 18 PDB header:lyase Chain: B: PDB Molecule:ribulose-1,5-bisphosphate carboxylase/oxygenase large PDBTitle: crystal structure of rubisco-like protein from rhodopseudomonas2 palustris 89 c3prhB_ not modelled 8.5 20 PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: tryptophanyl-trna synthetase val144pro mutant from b. subtilis 90 c1iufA_ not modelled 8.5 18 PDB header:dna binding protein Chain: A: PDB Molecule:centromere abp1 protein; PDBTitle: low resolution solution structure of the two dna-binding2 domains in schizosaccharomyces pombe abp1 protein 91 d1vqza2 not modelled 8.4 15 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:LplA-like 92 d1vlya2 not modelled 8.1 11 Fold:Folate-binding domain Superfamily:Folate-binding domain Family:Aminomethyltransferase folate-binding domain 93 c3tgoD_ not modelled 7.9 13 PDB header:membrane protein Chain: D: PDB Molecule:lipoprotein 34; PDBTitle: crystal structure of the e. coli bamcd complex 94 c3e4wB_ not modelled 7.9 21 PDB header:oxidoreductase Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a 33kda catalase-related protein from2 mycobacterium avium subsp. paratuberculosis. p2(1)2(1)2(1) crystal3 form. 95 c1sghA_ not modelled 7.8 14 PDB header:structural protein Chain: A: PDB Molecule:moesin; PDBTitle: moesin ferm domain bound to ebp50 c-terminal peptide 96 c3m5wB_ not modelled 7.8 11 PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from2 campylobacter jejuni 97 d2ibaa2 not modelled 7.7 8 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:Urate oxidase (uricase) 98 d1dgsa1 not modelled 7.5 17 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 99 d1r8se_ not modelled 7.3 22 Fold:alpha-alpha superhelix Superfamily:Sec7 domain Family:Sec7 domain