Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	L	A	S	R	F	G	R	Y	N	S	I	H	R	E	R	P	L	T	D	D	E	L	M	Q	F	V	P	S	V	F	S	G	D	K	H	E	S	R	S	E	R	Y	T	Y	I	P	T	I	N	I	I	N	K	L	R	D	E	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?		?	?	?	?	?	?	?	?	?	?	?																?	?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	Q	P	F	F	A	C	Q	S	R	V	R	D	L	G	R	R	E	Y	S	K	H	M	L	R	L	R	R	E	G	H	I	N	G	Q	E	V	P	E	I	I	L	L	N	S	H	D	G	S	S	S	Y	Q	M	I	P	G	I	F	R
Secondary structure
SS confidence
Disorder								?	?	?	?	?	?	?	?	?	?											?	?	?	?	?	?	?	?																						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		F	V	C	T	N	G	L	V	C	G	N	N	F	G	E	I	R	V	P	H	K	G	D	I	V	G	Q	V	I	E	G	A	Y	E	V	L	G	V	F	D	K	V	T	D	N	M	E	A	M	K	E	I	H	L	N	S	D	E	Q	H
Secondary structure
SS confidence
Disorder									?	?	?	?	?	?	?									?																												?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	F	G	R	A	A	L	M	V	R	Y	E	D	E	N	K	T	P	V	T	P	E	Q	I	I	T	P	R	R	W	E	D	K	Q	N	D	L	W	T	T	W	Q	R	V	Q	E	N	M	I	K	G	G	L	S	G	R	S	A	S	G
Secondary structure
SS confidence
Disorder																																																								?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Sequence		K	N	T	R	T	R	A	I	T	G	I	D	G	D	I	R	I	N	K	A	L	W	V	I	A	E	Q	F	R	K	W	K	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?																		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1kd8 chain E Region: 256 - 272 Aligned: 17 Modelled: 17 Confidence: 32.5% Identity: 18% PDB header:de novo protein Chain: E: PDB Molecule:gcn4 acid base heterodimer base-d12la16l; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12ia16v base-d12la16l Phyre2 PDB 3lg8 chain B Region: 101 - 127 Aligned: 16 Modelled: 27 Confidence: 24.6% Identity: 31% PDB header:hydrolase Chain: B: PDB Molecule:a-type atp synthase subunit e; PDBTitle: crystal structure of the c-terminal part of subunit e (e101-206) from2 methanocaldococcus jannaschii of a1ao atp synthase Phyre2 PDB 2f9j chain P Region: 14 - 29 Aligned: 16 Modelled: 16 Confidence: 24.3% Identity: 50% PDB header:rna binding protein Chain: P: PDB Molecule:splicing factor 3b subunit 1; PDBTitle: 3.0 angstrom resolution structure of a y22m mutant of the spliceosomal2 protein p14 bound to a region of sf3b155 Phyre2 PDB 1gt0 chain C domain 1 Region: 8 - 43 Aligned: 35 Modelled: 36 Confidence: 16.0% Identity: 9% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Homeodomain Phyre2 PDB 2qi2 chain A domain 1 Region: 212 - 227 Aligned: 16 Modelled: 16 Confidence: 15.3% Identity: 25% Fold: Sm-like fold Superfamily: Dom34/Pelota N-terminal domain-like Family: Dom34/Pelota N-terminal domain-like Phyre2 PDB 3lyd chain A Region: 211 - 228 Aligned: 18 Modelled: 18 Confidence: 13.6% Identity: 22% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of putative uncharacterized protein from jonesia2 denitrificans Phyre2 PDB 1xl7 chain A domain 2 Region: 77 - 168 Aligned: 89 Modelled: 89 Confidence: 13.0% Identity: 17% Fold: CoA-dependent acyltransferases Superfamily: CoA-dependent acyltransferases Family: Choline/Carnitine O-acyltransferase Phyre2 PDB 1e2v chain B Region: 120 - 141 Aligned: 21 Modelled: 22 Confidence: 12.7% Identity: 38% PDB header:electron transport proteins Chain: B: PDB Molecule:cytochrome f; PDBTitle: n153q mutant of cytochrome f from chlamydomonas reinhardtii Phyre2 PDB 2qi2 chain A Region: 212 - 227 Aligned: 16 Modelled: 16 Confidence: 12.5% Identity: 25% PDB header:cell cycle Chain: A: PDB Molecule:cell division protein pelota related protein; PDBTitle: crystal structure of the thermoplasma acidophilum pelota2 protein Phyre2 PDB 1y1p chain A domain 1 Region: 8 - 73 Aligned: 65 Modelled: 66 Confidence: 12.2% Identity: 8% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: Tyrosine-dependent oxidoreductases Phyre2 PDB 1vf5 chain C domain 1 Region: 120 - 141 Aligned: 21 Modelled: 22 Confidence: 12.2% Identity: 33% Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily: Cytochrome f, large domain Family: Cytochrome f, large domain Phyre2 PDB 3mca chain B Region: 213 - 227 Aligned: 15 Modelled: 15 Confidence: 11.6% Identity: 20% PDB header:translation regulation/hydrolase Chain: B: PDB Molecule:protein dom34; PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay Phyre2 PDB 1ci3 chain M domain 1 Region: 120 - 140 Aligned: 20 Modelled: 21 Confidence: 11.1% Identity: 40% Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily: Cytochrome f, large domain Family: Cytochrome f, large domain Phyre2 PDB 1e2w chain A domain 1 Region: 120 - 140 Aligned: 20 Modelled: 21 Confidence: 11.0% Identity: 40% Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily: Cytochrome f, large domain Family: Cytochrome f, large domain Phyre2 PDB 2zkr chain X Region: 254 - 262 Aligned: 9 Modelled: 9 Confidence: 10.5% Identity: 67% PDB header:ribosomal protein/rna Chain: X: PDB Molecule:rna helices; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 2fip chain A Region: 120 - 129 Aligned: 10 Modelled: 10 Confidence: 10.4% Identity: 30% PDB header:transcription Chain: A: PDB Molecule:late genes activator; PDBTitle: phage phi29 transcription regulator p4 Phyre2 PDB 2vgn chain A domain 1 Region: 212 - 227 Aligned: 16 Modelled: 16 Confidence: 10.4% Identity: 31% Fold: Sm-like fold Superfamily: Dom34/Pelota N-terminal domain-like Family: Dom34/Pelota N-terminal domain-like Phyre2 PDB 1hcz chain A domain 1 Region: 120 - 140 Aligned: 20 Modelled: 21 Confidence: 10.3% Identity: 35% Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily: Cytochrome f, large domain Family: Cytochrome f, large domain Phyre2 PDB 3jyw chain W Region: 254 - 262 Aligned: 9 Modelled: 9 Confidence: 10.2% Identity: 33% PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein l31(a); PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution Phyre2 PDB 1yu3 chain A domain 2 Region: 119 - 129 Aligned: 10 Modelled: 11 Confidence: 10.1% Identity: 40% Fold: C-type lectin-like Superfamily: C-type lectin-like Family: Mtd variable domain Phyre2 1 c1kd8E_ 2 c3lg8B_ 3 c2f9jP_ 4 d1gt0c1 5 d2qi2a1 6 c3lydA_ 7 d1xl7a2 8 c1e2vB_ 9 c2qi2A_ 10 d1y1pa1 11 d1vf5c1 12 c3mcaB_ 13 d1ci3m1 14 d1e2wa1 15 c2zkrx_ 16 c2fipA_ 17 d2vgna1 18 d1hcza1 19 c3jywW_ 20 d1yu3a2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1kd8E_ 32.5 18 PDB header:de novo protein Chain: E: PDB Molecule:gcn4 acid base heterodimer base-d12la16l; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12ia16v base-d12la16l 2 c3lg8B_ 24.6 31 PDB header:hydrolase Chain: B: PDB Molecule:a-type atp synthase subunit e; PDBTitle: crystal structure of the c-terminal part of subunit e (e101-206) from2 methanocaldococcus jannaschii of a1ao atp synthase 3 c2f9jP_ 24.3 50 PDB header:rna binding protein Chain: P: PDB Molecule:splicing factor 3b subunit 1; PDBTitle: 3.0 angstrom resolution structure of a y22m mutant of the spliceosomal2 protein p14 bound to a region of sf3b155 4 d1gt0c1 16.0 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 5 d2qi2a1 15.3 25 Fold:Sm-like fold Superfamily:Dom34/Pelota N-terminal domain-like Family:Dom34/Pelota N-terminal domain-like 6 c3lydA_ 13.6 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of putative uncharacterized protein from jonesia2 denitrificans 7 d1xl7a2 13.0 17 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 8 c1e2vB_ 12.7 38 PDB header:electron transport proteins Chain: B: PDB Molecule:cytochrome f; PDBTitle: n153q mutant of cytochrome f from chlamydomonas reinhardtii 9 c2qi2A_ 12.5 25 PDB header:cell cycle Chain: A: PDB Molecule:cell division protein pelota related protein; PDBTitle: crystal structure of the thermoplasma acidophilum pelota2 protein 10 d1y1pa1 12.2 8 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 11 d1vf5c1 12.2 33 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 12 c3mcaB_ 11.6 20 PDB header:translation regulation/hydrolase Chain: B: PDB Molecule:protein dom34; PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay 13 d1ci3m1 11.1 40 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 14 d1e2wa1 11.0 40 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 15 c2zkrx_ 10.5 67 PDB header:ribosomal protein/rna Chain: X: PDB Molecule:rna helices; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 16 c2fipA_ 10.4 30 PDB header:transcription Chain: A: PDB Molecule:late genes activator; PDBTitle: phage phi29 transcription regulator p4 17 d2vgna1 10.4 31 Fold:Sm-like fold Superfamily:Dom34/Pelota N-terminal domain-like Family:Dom34/Pelota N-terminal domain-like 18 d1hcza1 10.3 35 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 19 c3jywW_ 10.2 33 PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein l31(a); PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 20 d1yu3a2 10.1 40 Fold:C-type lectin-like Superfamily:C-type lectin-like Family:Mtd variable domain 21 c3agjD_ not modelled 10.1 21 PDB header:translation/hydrolase Chain: D: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of archaeal pelota and gtp-bound ef1 alpha complex 22 c3agjB_ not modelled 10.1 21 PDB header:translation/hydrolase Chain: B: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of archaeal pelota and gtp-bound ef1 alpha complex 23 d1em8b_ not modelled 9.9 25 Fold:DNA polymerase III psi subunit Superfamily:DNA polymerase III psi subunit Family:DNA polymerase III psi subunit 24 d1whza_ not modelled 9.9 25 Fold:dsRBD-like Superfamily:YcfA/nrd intein domain Family:YcfA-like 25 c2j376_ not modelled 9.6 44 PDB header:ribosome Chain: 6: PDB Molecule:ribosomal protein l31; PDBTitle: model of mammalian srp bound to 80s rncs 26 c2h4tB_ not modelled 9.5 21 PDB header:transferase Chain: B: PDB Molecule:carnitine o-palmitoyltransferase ii, PDBTitle: crystal structure of rat carnitine palmitoyltransferase ii 27 c3obyB_ not modelled 9.5 21 PDB header:hydrolase Chain: B: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of archaeoglobus fulgidus pelota reveals inter-2 domain structural plasticity 28 c2e75C_ not modelled 9.4 33 PDB header:photosynthesis Chain: C: PDB Molecule:apocytochrome f; PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus 29 c3kztB_ not modelled 9.4 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function (np_812423.1) from2 bacteroides thetaiotaomicron vpi-5482 at 2.10 a resolution 30 c3obwA_ not modelled 9.2 19 PDB header:hydrolase Chain: A: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of two archaeal pelotas reveal inter-domain2 structural plasticity 31 c3nauA_ not modelled 9.2 13 PDB header:transcription Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 2; PDBTitle: crystal structure of zhx2 hd2 (zinc-fingers and homeoboxes protein 2,2 homeodomain 2) 32 d1pufa_ not modelled 9.2 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 33 c4a1eW_ not modelled 9.2 44 PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein l31; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1 34 c3m9vA_ not modelled 9.1 21 PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent oxidoreductase; PDBTitle: x-ray structure of a kijd3 in complex with dtdp 35 d1vqox1 not modelled 8.9 56 Fold:Ribosomal protein L31e Superfamily:Ribosomal protein L31e Family:Ribosomal protein L31e 36 d1vkra_ not modelled 8.8 22 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit 37 c1vkrA_ not modelled 8.8 22 PDB header:transferase Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components; PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii 38 c2jxmB_ not modelled 8.6 33 PDB header:electron transport Chain: B: PDB Molecule:cytochrome f; PDBTitle: ensemble of twenty structures of the prochlorothrix2 hollandica plastocyanin- cytochrome f complex 39 c3nbmA_ not modelled 8.5 10 PDB header:transferase Chain: A: PDB Molecule:pts system, lactose-specific iibc components; PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae. 40 d1yu0a2 not modelled 8.4 40 Fold:C-type lectin-like Superfamily:C-type lectin-like Family:Mtd variable domain 41 c1t6fA_ not modelled 8.4 19 PDB header:cell cycle Chain: A: PDB Molecule:geminin; PDBTitle: crystal structure of the coiled-coil dimerization motif of2 geminin 42 c1ctmA_ not modelled 8.4 35 PDB header:electron transport(cytochrome) Chain: A: PDB Molecule:cytochrome f; PDBTitle: crystal structure of chloroplast cytochrome f reveals a2 novel cytochrome fold and unexpected heme ligation 43 d1w6ga2 not modelled 8.4 13 Fold:Cystatin-like Superfamily:Amine oxidase N-terminal region Family:Amine oxidase N-terminal region 44 d1pzra_ not modelled 8.1 25 Fold:HLH-like Superfamily:Docking domain B of the erythromycin polyketide synthase (DEBS) Family:Docking domain B of the erythromycin polyketide synthase (DEBS) 45 d1nk3p_ not modelled 8.0 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 46 c3phfX_ not modelled 7.8 33 PDB header:viral protein Chain: X: PDB Molecule:envelope glycoprotein l; PDBTitle: crystal structure of the epstein-barr virus gh and gl complex 47 c1q90A_ not modelled 7.8 38 PDB header:photosynthesis Chain: A: PDB Molecule:apocytochrome f; PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii 48 d9anta_ not modelled 7.7 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 49 d1f43a_ not modelled 7.6 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 50 c2pd0D_ not modelled 7.2 29 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein; PDBTitle: protein cgd2_2020 from cryptosporidium parvum 51 d1tu2b1 not modelled 7.2 33 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 52 d1mh3a1 not modelled 7.1 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 53 c2zfdB_ not modelled 7.1 14 PDB header:signaling protein/transferase Chain: B: PDB Molecule:putative uncharacterized protein t20l15_90; PDBTitle: the crystal structure of plant specific calcium binding protein atcbl22 in complex with the regulatory domain of atcipk14 54 c2e19A_ not modelled 7.0 14 PDB header:transcription Chain: A: PDB Molecule:transcription factor 8; PDBTitle: solution structure of the homeobox domain from human nil-2-2 a zinc finger protein, transcription factor 8 55 c2da1A_ not modelled 6.9 25 PDB header:transcription Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein; PDBTitle: solution structure of the first homeobox domain of at-2 binding transcription factor 1 (atbf1) 56 c3hp7A_ not modelled 6.9 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hemolysin, putative; PDBTitle: putative hemolysin from streptococcus thermophilus. 57 d1vnda_ not modelled 6.6 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 58 d2k8ea2 not modelled 6.3 21 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 59 c1s1iW_ not modelled 6.3 33 PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein l31; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 60 c1tu2B_ not modelled 6.3 33 PDB header:electron transport Chain: B: PDB Molecule:apocytochrome f; PDBTitle: the complex of nostoc cytochrome f and plastocyanin determin with2 paramagnetic nmr. based on the structures of cytochrome f and3 plastocyanin, 10 structures 61 d2k49a1 not modelled 6.2 21 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 62 d1le8a_ not modelled 6.2 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 63 d1sana_ not modelled 6.1 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 64 c1yfsB_ not modelled 6.0 22 PDB header:ligase Chain: B: PDB Molecule:alanyl-trna synthetase; PDBTitle: the crystal structure of alanyl-trna synthetase in complex2 with l-alanine 65 d1fjlb_ not modelled 6.0 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 66 d1bw5a_ not modelled 5.8 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 67 c2hl7A_ not modelled 5.7 14 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccmh; PDBTitle: crystal structure of the periplasmic domain of ccmh from pseudomonas2 aeruginosa 68 c3czcA_ not modelled 5.6 33 PDB header:transferase Chain: A: PDB Molecule:rmpb; PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans 69 c2lkyA_ not modelled 5.5 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of msmeg_1053, the second duf3349 annotated protein2 in the genome of mycobacterium smegmatis, seattle structural genomics3 center for infectious disease target mysma.17112.b 70 d2elca1 not modelled 5.5 12 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 71 c3hxxA_ not modelled 5.5 28 PDB header:ligase Chain: A: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of catalytic fragment of e. coli alars in complex2 with amppcp 72 d1iqoa_ not modelled 5.5 22 Fold:Hypothetical protein MTH1880 Superfamily:Hypothetical protein MTH1880 Family:Hypothetical protein MTH1880 73 d2fj6a1 not modelled 5.5 18 Fold:SAM domain-like Superfamily:YozE-like Family:YozE-like 74 c2iouC_ not modelled 5.5 40 PDB header:viral protein/membrane protein Chain: C: PDB Molecule:major tropism determinant p1; PDBTitle: major tropism determinant p1 (mtd-p1) variant complexed with2 bordetella brochiseptica virulence factor pertactin extracellular3 domain (prn-e). 75 d1ztpa1 not modelled 5.4 18 Fold:eIF4e-like Superfamily:eIF4e-like Family:BLES03-like 76 d1x87a_ not modelled 5.3 45 Fold:Urocanase Superfamily:Urocanase Family:Urocanase 77 c3sxuB_ not modelled 5.2 25 PDB header:transferase Chain: B: PDB Molecule:dna polymerase iii subunit psi; PDBTitle: structure of the e. coli ssb-dna polymerase iii interface 78 c2vgmA_ not modelled 5.0 42 PDB header:cell cycle Chain: A: PDB Molecule:dom34; PDBTitle: structure of yeast dom34 : a protein related to translation2 termination factor erf1 and involved in no-go decay.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0