Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	E	I	G	I	F	V	G	T	M	Y	G	N	S	L	L	V	A	E	E	A	E	A	I	L	T	A	Q	G	H	K	A	T	V	F	E	D	P	E	L	S	D	W	L	P	Y	Q	D	K	Y	V	L	V	V	T	S	T	T	G
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	G	D	L	P	D	S	I	V	P	L	F	Q	G	I	K	D	S	L	G	F	Q	P	N	L	R	Y	G	V	I	A	L	G	D	S	S	Y	V	N	F	C	N	G	G	K	Q	F	D	A	L	L	Q	E	Q	S	A	Q	R	V	G
Secondary structure
SS confidence
Disorder																			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Sequence		E	M	L	L	I	D	A	S	E	N	P	E	P	E	T	E	S	N	P	W	V	E	Q	W	G	T	L	L	S
Secondary structure
SS confidence
Disorder																													?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1j9z chain B Region: 1 - 148 Aligned: 146 Modelled: 148 Confidence: 100.0% Identity: 23% PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-cytochrome p450 reductase; PDBTitle: cypor-w677g Phyre2 PDB 3hr4 chain C Region: 2 - 149 Aligned: 145 Modelled: 148 Confidence: 100.0% Identity: 24% PDB header:oxidoreductase/metal binding protein Chain: C: PDB Molecule:nitric oxide synthase, inducible; PDBTitle: human inos reductase and calmodulin complex Phyre2 PDB 2bpo chain A Region: 2 - 148 Aligned: 146 Modelled: 147 Confidence: 100.0% Identity: 21% PDB header:reductase Chain: A: PDB Molecule:nadph-cytochrom p450 reductase; PDBTitle: crystal structure of the yeast cpr triple mutant: d74g,2 y75f, k78a. Phyre2 PDB 1tll chain A Region: 2 - 148 Aligned: 144 Modelled: 147 Confidence: 100.0% Identity: 26% PDB header:oxidoreductase Chain: A: PDB Molecule:nitric-oxide synthase, brain; PDBTitle: crystal structure of rat neuronal nitric-oxide synthase2 reductase module at 2.3 a resolution. Phyre2 PDB 1b1c chain A Region: 2 - 148 Aligned: 145 Modelled: 147 Confidence: 100.0% Identity: 23% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Cytochrome p450 reductase N-terminal domain-like Phyre2 PDB 1ja1 chain A domain 2 Region: 2 - 148 Aligned: 145 Modelled: 147 Confidence: 100.0% Identity: 23% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Cytochrome p450 reductase N-terminal domain-like Phyre2 PDB 1tll chain A domain 2 Region: 3 - 149 Aligned: 144 Modelled: 147 Confidence: 100.0% Identity: 26% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Cytochrome p450 reductase N-terminal domain-like Phyre2 PDB 1ykg chain A domain 1 Region: 4 - 148 Aligned: 141 Modelled: 145 Confidence: 100.0% Identity: 28% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Cytochrome p450 reductase N-terminal domain-like Phyre2 PDB 2hnb chain A Region: 1 - 148 Aligned: 146 Modelled: 148 Confidence: 100.0% Identity: 29% PDB header:electron transport Chain: A: PDB Molecule:protein mioc; PDBTitle: solution structure of a bacterial holo-flavodoxin Phyre2 PDB 1bvy chain F Region: 2 - 149 Aligned: 144 Modelled: 148 Confidence: 100.0% Identity: 16% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 1bvy chain F Region: 2 - 149 Aligned: 144 Modelled: 148 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: F: PDB Molecule:protein (cytochrome p450 bm-3); PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3) Phyre2 PDB 3f6s chain I Region: 2 - 148 Aligned: 146 Modelled: 147 Confidence: 100.0% Identity: 16% PDB header:electron transport Chain: I: PDB Molecule:flavodoxin; PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers Phyre2 PDB 1f4p chain A Region: 3 - 148 Aligned: 145 Modelled: 146 Confidence: 100.0% Identity: 16% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 2wc1 chain A Region: 1 - 149 Aligned: 148 Modelled: 149 Confidence: 100.0% Identity: 18% PDB header:electron transport Chain: A: PDB Molecule:flavodoxin; PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a Phyre2 PDB 1yob chain A domain 1 Region: 2 - 148 Aligned: 144 Modelled: 147 Confidence: 100.0% Identity: 24% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 2fcr chain A Region: 3 - 149 Aligned: 146 Modelled: 147 Confidence: 100.0% Identity: 22% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 1czn chain A Region: 2 - 148 Aligned: 144 Modelled: 147 Confidence: 100.0% Identity: 21% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 1obo chain A Region: 2 - 146 Aligned: 141 Modelled: 145 Confidence: 99.9% Identity: 19% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 1ag9 chain A Region: 2 - 149 Aligned: 144 Modelled: 148 Confidence: 99.9% Identity: 19% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 1fue chain A Region: 3 - 149 Aligned: 139 Modelled: 147 Confidence: 99.9% Identity: 27% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 1 c1j9zB_ 2 c3hr4C_ 3 c2bpoA_ 4 c1tllA_ 5 d1b1ca_ 6 d1ja1a2 7 d1tlla2 8 d1ykga1 9 c2hnbA_ 10 d1bvyf_ 11 c1bvyF_ 12 c3f6sI_ 13 d1f4pa_ 14 c2wc1A_ 15 d1yoba1 16 d2fcra_ 17 d1czna_ 18 d1oboa_ 19 d1ag9a_ 20 d1fuea_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1j9zB_ 100.0 23 PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-cytochrome p450 reductase; PDBTitle: cypor-w677g 2 c3hr4C_ 100.0 24 PDB header:oxidoreductase/metal binding protein Chain: C: PDB Molecule:nitric oxide synthase, inducible; PDBTitle: human inos reductase and calmodulin complex 3 c2bpoA_ 100.0 21 PDB header:reductase Chain: A: PDB Molecule:nadph-cytochrom p450 reductase; PDBTitle: crystal structure of the yeast cpr triple mutant: d74g,2 y75f, k78a. 4 c1tllA_ 100.0 26 PDB header:oxidoreductase Chain: A: PDB Molecule:nitric-oxide synthase, brain; PDBTitle: crystal structure of rat neuronal nitric-oxide synthase2 reductase module at 2.3 a resolution. 5 d1b1ca_ 100.0 23 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 6 d1ja1a2 100.0 23 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 7 d1tlla2 100.0 26 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 8 d1ykga1 100.0 28 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 9 c2hnbA_ 100.0 29 PDB header:electron transport Chain: A: PDB Molecule:protein mioc; PDBTitle: solution structure of a bacterial holo-flavodoxin 10 d1bvyf_ 100.0 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 11 c1bvyF_ 100.0 16 PDB header:oxidoreductase Chain: F: PDB Molecule:protein (cytochrome p450 bm-3); PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3) 12 c3f6sI_ 100.0 16 PDB header:electron transport Chain: I: PDB Molecule:flavodoxin; PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers 13 d1f4pa_ 100.0 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 14 c2wc1A_ 100.0 18 PDB header:electron transport Chain: A: PDB Molecule:flavodoxin; PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a 15 d1yoba1 100.0 24 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 16 d2fcra_ 100.0 22 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 17 d1czna_ 100.0 21 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 18 d1oboa_ 99.9 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 19 d1ag9a_ 99.9 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 20 d1fuea_ 99.9 27 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 21 c3hlyA_ not modelled 99.9 12 PDB header:flavoprotein Chain: A: PDB Molecule:flavodoxin-like domain; PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d. 22 d5nula_ not modelled 99.9 10 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 23 d2fz5a1 not modelled 99.9 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 24 d1rlja_ not modelled 99.9 25 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavoprotein NrdI 25 c2x2oA_ not modelled 99.9 17 PDB header:flavoprotein Chain: A: PDB Molecule:nrdi protein; PDBTitle: the flavoprotein nrdi from bacillus cereus with the2 initially oxidized fmn cofactor in an intermediate3 radiation reduced state 26 d1e5da1 not modelled 99.9 12 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 27 c1vmeB_ not modelled 99.9 13 PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution 28 c3fniA_ not modelled 99.8 13 PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a 29 c3n39D_ not modelled 99.8 13 PDB header:oxidoreductase Chain: D: PDB Molecule:protein nrdi; PDBTitle: ribonucleotide reductase dimanganese(ii)-nrdf from escherichia coli in2 complex with nrdi 30 d1vmea1 not modelled 99.8 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 31 d1ycga1 not modelled 99.8 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 32 c1ychD_ not modelled 99.8 17 PDB header:oxidoreductase Chain: D: PDB Molecule:nitric oxide reductase; PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase 33 c2ohiB_ not modelled 99.8 12 PDB header:oxidoreductase Chain: B: PDB Molecule:type a flavoprotein fpra; PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state 34 c2q9uB_ not modelled 99.8 11 PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis 35 d2arka1 not modelled 99.8 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 36 c1e5dA_ not modelled 99.7 14 PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas 37 c3d7nA_ not modelled 99.7 10 PDB header:electron transport Chain: A: PDB Molecule:flavodoxin, wrba-like protein; PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens 38 d2a5la1 not modelled 99.6 12 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 39 d1ydga_ not modelled 99.5 12 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 40 c3b6iB_ not modelled 99.5 13 PDB header:flavoprotein Chain: B: PDB Molecule:flavoprotein wrba; PDBTitle: wrba from escherichia coli, native structure 41 c3klbA_ not modelled 99.5 16 PDB header:flavoprotein Chain: A: PDB Molecule:putative flavoprotein; PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution 42 c2zkiH_ not modelled 99.4 10 PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) 43 c3edoA_ not modelled 99.1 10 PDB header:flavoprotein Chain: A: PDB Molecule:putative trp repressor binding protein; PDBTitle: crystal structure of flavoprotein in complex with fmn2 (yp_193882.1) from lactobacillus acidophilus ncfm at 1.203 a resolution 44 c3rpeA_ not modelled 98.8 12 PDB header:oxidoreductase Chain: A: PDB Molecule:modulator of drug activity b; PDBTitle: 1.1 angstrom crystal structure of putative modulator of drug activity2 (mdab) from yersinia pestis co92. 45 d1t5ba_ not modelled 98.8 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 46 c3k1yE_ not modelled 98.8 14 PDB header:oxidoreductase Chain: E: PDB Molecule:oxidoreductase; PDBTitle: x-ray structure of oxidoreductase from corynebacterium2 diphtheriae. orthorombic crystal form, northeast structural3 genomics consortium target cdr100d 47 c2q62A_ not modelled 98.7 17 PDB header:flavoprotein Chain: A: PDB Molecule:arsh; PDBTitle: crystal structure of arsh from sinorhizobium meliloti 48 d1sqsa_ not modelled 98.6 8 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein SP1951 49 c3lcmB_ not modelled 98.6 12 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159 50 d1rtta_ not modelled 98.6 7 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 51 c2hpvA_ not modelled 98.6 10 PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase; PDBTitle: crystal structure of fmn-dependent azoreductase from enterococcus2 faecalis 52 d2qwxa1 not modelled 98.5 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 53 d1t0ia_ not modelled 98.5 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 54 d1qrda_ not modelled 98.5 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 55 c3f2vA_ not modelled 98.5 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:general stress protein 14; PDBTitle: crystal structure of the general stress protein 142 (tde0354) in complex with fmn from treponema denticola,3 northeast structural genomics consortium target tdr58. 56 c3p0rA_ not modelled 98.5 10 PDB header:oxidoreductase Chain: A: PDB Molecule:azoreductase; PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne 57 d1nni1_ not modelled 98.4 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 58 d2z98a1 not modelled 98.3 7 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 59 c2v9cA_ not modelled 98.3 12 PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase 1; PDBTitle: x-ray crystallographic structure of a pseudomonas2 aeruginosa azoreductase in complex with methyl red. 60 c2vzhA_ not modelled 98.2 14 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-dependent fmn reductase; PDBTitle: structures of nadh:fmn oxidoreductase (emob)-fmn complex 61 c2fzvC_ not modelled 98.2 14 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:putative arsenical resistance protein; PDBTitle: crystal structure of an apo form of a flavin-binding protein from2 shigella flexneri 62 c3fvwA_ not modelled 98.2 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative nad(p)h-dependent fmn reductase; PDBTitle: crystal structure of the q8dwd8_strmu protein from2 streptococcus mutans. northeast structural genomics3 consortium target smr99. 63 d1dxqa_ not modelled 98.2 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 64 d2fzva1 not modelled 98.1 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 65 c2amjD_ not modelled 98.1 13 PDB header:oxidoreductase Chain: D: PDB Molecule:modulator of drug activity b; PDBTitle: crystal structure of modulator of drug activity b from escherichia2 coli o157:h7 66 d1rlia_ not modelled 98.1 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein YwqN 67 d1d4aa_ not modelled 97.9 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 68 c1tvmA_ not modelled 94.6 16 PDB header:transferase Chain: A: PDB Molecule:pts system, galactitol-specific iib component; PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system 69 c3czcA_ not modelled 92.9 14 PDB header:transferase Chain: A: PDB Molecule:rmpb; PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans 70 d1ccwa_ not modelled 92.2 15 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 71 c3ha2B_ not modelled 92.0 10 PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-quinone reductase; PDBTitle: crystal structure of protein (nadph-quinone reductase) from2 p.pentosaceus, northeast structural genomics consortium target ptr24a 72 c3s40C_ not modelled 89.9 9 PDB header:transferase Chain: C: PDB Molecule:diacylglycerol kinase; PDBTitle: the crystal structure of a diacylglycerol kinases from bacillus2 anthracis str. sterne 73 d1t0ba_ not modelled 88.7 13 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:ThuA-like 74 c3nbmA_ not modelled 86.8 6 PDB header:transferase Chain: A: PDB Molecule:pts system, lactose-specific iibc components; PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae. 75 c1vkrA_ not modelled 86.2 13 PDB header:transferase Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components; PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii 76 d1vkra_ not modelled 86.2 13 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit 77 d1iiba_ not modelled 82.3 15 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit 78 d3eeqa2 not modelled 82.1 11 Fold:CbiG N-terminal domain-like Superfamily:CbiG N-terminal domain-like Family:CbiG N-terminal domain-like 79 d1t1va_ not modelled 81.9 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:SH3BGR (SH3-binding, glutamic acid-rich protein-like) 80 c3eeqB_ not modelled 81.1 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative cobalamin biosynthesis protein g PDBTitle: crystal structure of a putative cobalamin biosynthesis2 protein g homolog from sulfolobus solfataricus 81 d1iowa1 not modelled 81.0 17 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:D-Alanine ligase N-terminal domain 82 d1b4ub_ not modelled 80.2 16 Fold:Phosphorylase/hydrolase-like Superfamily:LigB-like Family:LigB-like 83 c3ia7A_ not modelled 75.9 17 PDB header:transferase Chain: A: PDB Molecule:calg4; PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase 84 c3qyfA_ not modelled 75.8 18 PDB header:antiviral protein Chain: A: PDB Molecule:crispr-associated protein; PDBTitle: crystal structure of the crispr-associated protein sso1393 from2 sulfolobus solfataricus 85 d1u0ta_ not modelled 75.2 17 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like 86 c2o7jA_ not modelled 73.6 9 PDB header:sugar binding protein Chain: A: PDB Molecule:oligopeptide abc transporter, periplasmic PDBTitle: the x-ray crystal structure of a thermophilic cellobiose2 binding protein bound with cellopentaose 87 c2l2qA_ not modelled 72.7 13 PDB header:transferase Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela); PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi 88 c3eywA_ not modelled 72.3 7 PDB header:transport protein Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff 89 d1w85b2 not modelled 70.2 17 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain 90 c2y7eA_ not modelled 68.3 11 PDB header:lyase Chain: A: PDB Molecule:3-keto-5-aminohexanoate cleavage enzyme; PDBTitle: crystal structure of the 3-keto-5-aminohexanoate cleavage enzyme2 (kce) from candidatus cloacamonas acidaminovorans (tetragonal form) 91 c3t66A_ not modelled 67.9 8 PDB header:transport protein Chain: A: PDB Molecule:nickel abc transporter (nickel-binding protein); PDBTitle: crystal structure of nickel abc transporter from bacillus halodurans 92 c3dhnA_ not modelled 67.5 15 PDB header:isomerase, lyase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of the putative epimerase q89z24_bactn2 from bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr310. 93 d1qf6a1 not modelled 67.2 14 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 94 c3gpiA_ not modelled 64.4 39 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: structure of putative nad-dependent epimerase/dehydratase2 from methylobacillus flagellatus 95 d1fmfa_ not modelled 64.1 16 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 96 c1ztyA_ not modelled 62.4 14 PDB header:sugar binding protein, signaling protein Chain: A: PDB Molecule:chitin oligosaccharide binding protein; PDBTitle: crystal structure of the chitin oligasaccharide binding2 protein 97 c2r60A_ not modelled 62.0 17 PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii 98 c2qx0A_ not modelled 60.2 14 PDB header:transferase Chain: A: PDB Molecule:7,8-dihydro-6-hydroxymethylpterin- PDBTitle: crystal structure of yersinia pestis hppk (ternary complex) 99 d2p1ra1 not modelled 60.2 13 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 100 c3etjB_ not modelled 59.8 13 PDB header:lyase Chain: B: PDB Molecule:phosphoribosylaminoimidazole carboxylase atpase PDBTitle: crystal structure e. coli purk in complex with mg, adp, and2 pi 101 d1ydha_ not modelled 59.4 21 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 102 d1gpua3 not modelled 59.2 27 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Transketolase C-terminal domain-like 103 d2r4qa1 not modelled 58.7 13 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 104 c2dlnA_ not modelled 57.4 17 PDB header:ligase(peptidoglycan synthesis) Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: vancomycin resistance: structure of d-alanine:d-alanine2 ligase at 2.3 angstroms resolution 105 c3c1oA_ not modelled 57.3 19 PDB header:oxidoreductase Chain: A: PDB Molecule:eugenol synthase; PDBTitle: the multiple phenylpropene synthases in both clarkia2 breweri and petunia hybrida represent two distinct lineages 106 c2q1wC_ not modelled 55.7 19 PDB header:sugar binding protein Chain: C: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase; PDBTitle: crystal structure of the bordetella bronchiseptica enzyme wbmh in2 complex with nad+ 107 c3rqtA_ not modelled 54.7 9 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: 1.5 angstrom crystal structure of the complex of ligand binding2 component of abc-type import system from staphylococcus aureus with3 nickel and two histidines 108 d2c42a3 not modelled 53.9 18 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Pyruvate-ferredoxin oxidoreductase, PFOR, domain II 109 d1vr5a1 not modelled 53.7 5 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 110 d1hdoa_ not modelled 52.4 20 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 111 c3d8tB_ not modelled 52.1 18 PDB header:lyase Chain: B: PDB Molecule:uroporphyrinogen-iii synthase; PDBTitle: thermus thermophilus uroporphyrinogen iii synthase 112 c2q4oA_ not modelled 51.8 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein at2g37210/t2n18.3; PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at2g37210 113 d2q4oa1 not modelled 51.8 18 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 114 c2grvC_ not modelled 51.6 24 PDB header:biosynthetic protein Chain: C: PDB Molecule:lpqw; PDBTitle: crystal structure of lpqw 115 c2ct6A_ not modelled 50.0 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sh3 domain-binding glutamic acid-rich-like PDBTitle: solution structure of the sh3 domain-binding glutamic acid-2 rich-like protein 2 116 d2r8oa3 not modelled 48.7 29 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Transketolase C-terminal domain-like 117 c3lvuB_ not modelled 48.6 10 PDB header:transport protein Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding protein; PDBTitle: crystal structure of abc transporter, periplasmic substrate-binding2 protein spo2066 from silicibacter pomeroyi 118 c2q4dB_ not modelled 47.9 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:lysine decarboxylase-like protein at5g11950; PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at5g11950 119 c3no5C_ not modelled 47.1 12 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a pfam duf849 domain containing protein2 (reut_a1631) from ralstonia eutropha jmp134 at 1.90 a resolution 120 d1f0ka_ not modelled 46.6 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Peptidoglycan biosynthesis glycosyltransferase MurG

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0