Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	E	E	T	I	F	S	K	I	I	R	R	E	I	P	S	D	I	V	Y	Q	D	D	L	V	T	A	F	R	D	I	S	P	Q	A	P	T	H	I	L	I	I	P	N	I	L	I	P	T	V	N	D	V	S	A	E	H	E	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Sequence		A	L	G	R	M	I	T	V	A	A	K	I	A	E	Q	E	G	I	A	E	D	G	Y	R	L	I	M	N	T	N	R	H	G	G	Q	E	V	Y	H	I	H	M	H	L	L	G	G	R	P	L	G	P	M	L	A	H	K	G	L
Secondary structure
SS confidence
Disorder																																																				?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3n1t chain E Region: 4 - 115 Aligned: 112 Modelled: 112 Confidence: 100.0% Identity: 99% PDB header:hydrolase Chain: E: PDB Molecule:hit-like protein hint; PDBTitle: crystal structure of the h101a mutant echint gmp complex Phyre2 PDB 1xqu chain A Region: 3 - 114 Aligned: 112 Modelled: 112 Confidence: 100.0% Identity: 48% Fold: HIT-like Superfamily: HIT-like Family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins Phyre2 PDB 1xqu chain A Region: 3 - 114 Aligned: 112 Modelled: 112 Confidence: 100.0% Identity: 48% PDB header:hydrolase Chain: A: PDB Molecule:hit family hydrolase; PDBTitle: hit family hydrolase from clostridium thermocellum cth-393 Phyre2 PDB 1kpf chain A Region: 4 - 111 Aligned: 107 Modelled: 108 Confidence: 100.0% Identity: 47% Fold: HIT-like Superfamily: HIT-like Family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins Phyre2 PDB 3l7x chain A Region: 2 - 115 Aligned: 113 Modelled: 114 Confidence: 100.0% Identity: 29% PDB header:cell cycle Chain: A: PDB Molecule:putative hit-like protein involved in cell-cycle PDBTitle: the crystal structure of smu.412c from streptococcus mutans ua159 Phyre2 PDB 3ksv chain A Region: 1 - 112 Aligned: 111 Modelled: 112 Confidence: 100.0% Identity: 27% PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: hypothetical protein from leishmania major Phyre2 PDB 1rzy chain A Region: 2 - 111 Aligned: 109 Modelled: 110 Confidence: 100.0% Identity: 46% Fold: HIT-like Superfamily: HIT-like Family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins Phyre2 PDB 3o0m chain B Region: 4 - 113 Aligned: 110 Modelled: 110 Confidence: 100.0% Identity: 25% PDB header:hydrolase Chain: B: PDB Molecule:hit family protein; PDBTitle: crystal structure of a zn-bound histidine triad family protein from2 mycobacterium smegmatis Phyre2 PDB 3imi chain B Region: 2 - 115 Aligned: 113 Modelled: 114 Confidence: 100.0% Identity: 29% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hit family protein; PDBTitle: 2.01 angstrom resolution crystal structure of a hit family protein2 from bacillus anthracis str. 'ames ancestor' Phyre2 PDB 3lb5 chain B Region: 2 - 112 Aligned: 110 Modelled: 111 Confidence: 100.0% Identity: 35% PDB header:cell cycle Chain: B: PDB Molecule:hit-like protein involved in cell-cycle regulation; PDBTitle: crystal structure of hit-like protein involved in cell-cycle2 regulation from bartonella henselae with unknown ligand Phyre2 PDB 2eo4 chain A Region: 5 - 118 Aligned: 113 Modelled: 114 Confidence: 100.0% Identity: 25% PDB header:hydrolase Chain: A: PDB Molecule:150aa long hypothetical histidine triad nucleotide-binding PDBTitle: crystal structure of hypothetical histidine triad nucleotide-binding2 protein st2152 from sulfolobus tokodaii strain7 Phyre2 PDB 3ano chain A Region: 4 - 112 Aligned: 107 Modelled: 109 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:ap-4-a phosphorylase; PDBTitle: crystal structure of a novel diadenosine 5',5'''-p1,p4-tetraphosphate2 phosphorylase from mycobacterium tuberculosis h37rv Phyre2 PDB 3oj7 chain A Region: 5 - 114 Aligned: 108 Modelled: 110 Confidence: 100.0% Identity: 44% PDB header:metal binding protein Chain: A: PDB Molecule:putative histidine triad family protein; PDBTitle: crystal structure of a histidine triad family protein from entamoeba2 histolytica, bound to sulfate Phyre2 PDB 1y23 chain A Region: 3 - 112 Aligned: 109 Modelled: 110 Confidence: 100.0% Identity: 34% Fold: HIT-like Superfamily: HIT-like Family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins Phyre2 PDB 1ems chain B Region: 2 - 112 Aligned: 109 Modelled: 111 Confidence: 99.9% Identity: 25% PDB header:antitumor protein Chain: B: PDB Molecule:nit-fragile histidine triad fusion protein; PDBTitle: crystal structure of the c. elegans nitfhit protein Phyre2 PDB 1ems chain A domain 1 Region: 3 - 113 Aligned: 106 Modelled: 111 Confidence: 99.9% Identity: 22% Fold: HIT-like Superfamily: HIT-like Family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins Phyre2 PDB 3p0t chain B Region: 4 - 114 Aligned: 105 Modelled: 106 Confidence: 99.9% Identity: 31% PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an hit-like protein from mycobacterium2 paratuberculosis Phyre2 PDB 2oik chain A domain 1 Region: 2 - 115 Aligned: 104 Modelled: 114 Confidence: 99.9% Identity: 15% Fold: HIT-like Superfamily: HIT-like Family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins Phyre2 PDB 3r6f chain A Region: 3 - 115 Aligned: 104 Modelled: 111 Confidence: 99.9% Identity: 25% PDB header:hydrolase Chain: A: PDB Molecule:hit family protein; PDBTitle: crystal structure of a zinc-containing hit family protein from2 encephalitozoon cuniculi Phyre2 PDB 1guq chain A domain 2 Region: 2 - 107 Aligned: 106 Modelled: 106 Confidence: 99.9% Identity: 12% Fold: HIT-like Superfamily: HIT-like Family: Hexose-1-phosphate uridylyltransferase Phyre2 1 c3n1tE_ 2 d1xqua_ 3 c1xquA_ 4 d1kpfa_ 5 c3l7xA_ 6 c3ksvA_ 7 d1rzya_ 8 c3o0mB_ 9 c3imiB_ 10 c3lb5B_ 11 c2eo4A_ 12 c3anoA_ 13 c3oj7A_ 14 d1y23a_ 15 c1emsB_ 16 d1emsa1 17 c3p0tB_ 18 d2oika1 19 c3r6fA_ 20 d1guqa2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3n1tE_ 100.0 99 PDB header:hydrolase Chain: E: PDB Molecule:hit-like protein hint; PDBTitle: crystal structure of the h101a mutant echint gmp complex 2 d1xqua_ 100.0 48 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 3 c1xquA_ 100.0 48 PDB header:hydrolase Chain: A: PDB Molecule:hit family hydrolase; PDBTitle: hit family hydrolase from clostridium thermocellum cth-393 4 d1kpfa_ 100.0 47 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 5 c3l7xA_ 100.0 29 PDB header:cell cycle Chain: A: PDB Molecule:putative hit-like protein involved in cell-cycle PDBTitle: the crystal structure of smu.412c from streptococcus mutans ua159 6 c3ksvA_ 100.0 27 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: hypothetical protein from leishmania major 7 d1rzya_ 100.0 46 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 8 c3o0mB_ 100.0 25 PDB header:hydrolase Chain: B: PDB Molecule:hit family protein; PDBTitle: crystal structure of a zn-bound histidine triad family protein from2 mycobacterium smegmatis 9 c3imiB_ 100.0 29 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hit family protein; PDBTitle: 2.01 angstrom resolution crystal structure of a hit family protein2 from bacillus anthracis str. 'ames ancestor' 10 c3lb5B_ 100.0 35 PDB header:cell cycle Chain: B: PDB Molecule:hit-like protein involved in cell-cycle regulation; PDBTitle: crystal structure of hit-like protein involved in cell-cycle2 regulation from bartonella henselae with unknown ligand 11 c2eo4A_ 100.0 25 PDB header:hydrolase Chain: A: PDB Molecule:150aa long hypothetical histidine triad nucleotide-binding PDBTitle: crystal structure of hypothetical histidine triad nucleotide-binding2 protein st2152 from sulfolobus tokodaii strain7 12 c3anoA_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:ap-4-a phosphorylase; PDBTitle: crystal structure of a novel diadenosine 5',5'''-p1,p4-tetraphosphate2 phosphorylase from mycobacterium tuberculosis h37rv 13 c3oj7A_ 100.0 44 PDB header:metal binding protein Chain: A: PDB Molecule:putative histidine triad family protein; PDBTitle: crystal structure of a histidine triad family protein from entamoeba2 histolytica, bound to sulfate 14 d1y23a_ 100.0 34 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 15 c1emsB_ 99.9 25 PDB header:antitumor protein Chain: B: PDB Molecule:nit-fragile histidine triad fusion protein; PDBTitle: crystal structure of the c. elegans nitfhit protein 16 d1emsa1 99.9 22 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 17 c3p0tB_ 99.9 31 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an hit-like protein from mycobacterium2 paratuberculosis 18 d2oika1 99.9 15 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 19 c3r6fA_ 99.9 25 PDB header:hydrolase Chain: A: PDB Molecule:hit family protein; PDBTitle: crystal structure of a zinc-containing hit family protein from2 encephalitozoon cuniculi 20 d1guqa2 99.9 12 Fold:HIT-like Superfamily:HIT-like Family:Hexose-1-phosphate uridylyltransferase 21 d1z84a2 not modelled 99.9 10 Fold:HIT-like Superfamily:HIT-like Family:Hexose-1-phosphate uridylyltransferase 22 d1fita_ not modelled 99.9 19 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 23 c1gupC_ not modelled 99.9 13 PDB header:nucleotidyltransferase Chain: C: PDB Molecule:galactose-1-phosphate uridylyltransferase; PDBTitle: structure of nucleotidyltransferase complexed with udp-2 galactose 24 c1zwjA_ not modelled 99.9 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative galactose-1-phosphate uridyl transferase; PDBTitle: x-ray structure of galt-like protein from arabidopsis thaliana2 at5g18200 25 c3i24B_ not modelled 99.8 14 PDB header:hydrolase Chain: B: PDB Molecule:hit family hydrolase; PDBTitle: crystal structure of a hit family hydrolase protein from2 vibrio fischeri. northeast structural genomics consortium3 target id vfr176 26 c3i4sB_ not modelled 99.8 13 PDB header:hydrolase Chain: B: PDB Molecule:histidine triad protein; PDBTitle: crystal structure of histidine triad protein blr8122 from2 bradyrhizobium japonicum 27 c3nrdB_ not modelled 99.8 15 PDB header:nucleotide binding protein Chain: B: PDB Molecule:histidine triad (hit) protein; PDBTitle: crystal structure of a histidine triad (hit) protein (smc02904) from2 sinorhizobium meliloti 1021 at 2.06 a resolution 28 c3oheA_ not modelled 99.7 15 PDB header:hydrolase Chain: A: PDB Molecule:histidine triad (hit) protein; PDBTitle: crystal structure of a histidine triad protein (maqu_1709) from2 marinobacter aquaeolei vt8 at 1.20 a resolution 29 d1z84a1 not modelled 99.4 10 Fold:HIT-like Superfamily:HIT-like Family:Hexose-1-phosphate uridylyltransferase 30 d3bl9a1 not modelled 99.4 17 Fold:HIT-like Superfamily:HIT-like Family:mRNA decapping enzyme DcpS C-terminal domain 31 c3bl9B_ not modelled 99.3 17 PDB header:hydrolase Chain: B: PDB Molecule:scavenger mrna-decapping enzyme dcps; PDBTitle: synthetic gene encoded dcps bound to inhibitor dg157493 32 d1vlra1 not modelled 99.2 17 Fold:HIT-like Superfamily:HIT-like Family:mRNA decapping enzyme DcpS C-terminal domain 33 c1xmlA_ not modelled 99.0 18 PDB header:chaperone Chain: A: PDB Molecule:heat shock-like protein 1; PDBTitle: structure of human dcps 34 d1guqa1 not modelled 98.1 10 Fold:HIT-like Superfamily:HIT-like Family:Hexose-1-phosphate uridylyltransferase 35 d2pofa1 not modelled 95.9 17 Fold:HIT-like Superfamily:HIT-like Family:CDH-like 36 c3csqC_ not modelled 40.3 23 PDB header:hydrolase Chain: C: PDB Molecule:morphogenesis protein 1; PDBTitle: crystal and cryoem structural studies of a cell wall2 degrading enzyme in the bacteriophage phi29 tail 37 c3hfnA_ not modelled 33.4 19 PDB header:rna binding protein Chain: A: PDB Molecule:asl2047 protein; PDBTitle: crystal structure of an hfq protein from anabaena sp. 38 c1qyuA_ not modelled 18.8 41 PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: structure of the catalytic domain of 23s rrna pseudouridine2 synthase rlud 39 d1v9ka_ not modelled 17.1 33 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 40 d2cs7a1 not modelled 15.4 25 Fold:IL8-like Superfamily:PhtA domain-like Family:PhtA domain-like 41 c2i82D_ not modelled 15.1 33 PDB header:lyase/rna Chain: D: PDB Molecule:ribosomal large subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridine synthase rlua: indirect2 sequence readout through protein-induced rna structure 42 d2at2a1 not modelled 14.4 9 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 43 d1v9fa_ not modelled 14.1 41 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 44 c1v9fA_ not modelled 14.1 41 PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: crystal structure of catalytic domain of pseudouridine2 synthase rlud from escherichia coli 45 c3hfoC_ not modelled 13.5 19 PDB header:rna binding protein Chain: C: PDB Molecule:ssr3341 protein; PDBTitle: crystal structure of an hfq protein from synechocystis sp. 46 c3sdsA_ not modelled 12.8 13 PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase, mitochondrial; PDBTitle: crystal structure of a mitochondrial ornithine carbamoyltransferase2 from coccidioides immitis 47 d2hnga1 not modelled 12.6 12 Fold:SecB-like Superfamily:SecB-like Family:SP1558-like 48 d1ryba_ not modelled 12.3 8 Fold:Phosphorylase/hydrolase-like Superfamily:Peptidyl-tRNA hydrolase-like Family:Peptidyl-tRNA hydrolase-like 49 c1t3bA_ not modelled 12.2 11 PDB header:isomerase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc; PDBTitle: x-ray structure of dsbc from haemophilus influenzae 50 c2qwwB_ not modelled 12.1 8 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution 51 c2ef0A_ not modelled 11.1 11 PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: crystal structure of ornithine carbamoyltransferase from thermus2 thermophilus 52 d1tuga1 not modelled 11.1 11 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 53 d1vlva1 not modelled 10.9 17 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 54 d1ekxa1 not modelled 10.6 11 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 55 c3gd5D_ not modelled 10.5 9 PDB header:transferase Chain: D: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: crystal structure of ornithine carbamoyltransferase from gloeobacter2 violaceus 56 d1pg5a1 not modelled 10.3 10 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 57 d1pvva1 not modelled 9.6 9 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 58 c3lxmC_ not modelled 9.4 17 PDB header:transferase Chain: C: PDB Molecule:aspartate carbamoyltransferase; PDBTitle: 2.00 angstrom resolution crystal structure of a catalytic2 subunit of an aspartate carbamoyltransferase (pyrb) from3 yersinia pestis co92 59 c3l6tB_ not modelled 9.4 25 PDB header:hydrolase Chain: B: PDB Molecule:mobilization protein trai; PDBTitle: crystal structure of an n-terminal mutant of the plasmid pcu1 trai2 relaxase domain 60 d1otha1 not modelled 9.4 10 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 61 d1dxha1 not modelled 9.3 6 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 62 c2qgpA_ not modelled 8.4 17 PDB header:hydrolase Chain: A: PDB Molecule:hnh endonuclease; PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr87. 63 c3vg8F_ not modelled 8.4 22 PDB header:unknown function Chain: F: PDB Molecule:hypothetical protein tthb210; PDBTitle: crystal structure of hypothetical protein tthb210 from thermus2 thermophilus hb8 64 d1ex4a1 not modelled 8.3 19 Fold:SH3-like barrel Superfamily:DNA-binding domain of retroviral integrase Family:DNA-binding domain of retroviral integrase 65 d1ml4a1 not modelled 8.1 14 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 66 c3py7A_ not modelled 8.0 7 PDB header:viral protein Chain: A: PDB Molecule:maltose-binding periplasmic protein,paxillin ld1,protein e6 PDBTitle: crystal structure of full-length bovine papillomavirus oncoprotein e62 in complex with ld1 motif of paxillin at 2.3a resolution 67 c2elpA_ not modelled 7.9 13 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 13th c2h2 zinc finger of human2 zinc finger protein 406 68 d2jz6a1 not modelled 7.9 25 Fold:L28p-like Superfamily:L28p-like Family:Ribosomal protein L28 69 d2d8ya1 not modelled 7.4 11 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 70 c1jzdA_ not modelled 7.1 7 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc; PDBTitle: dsbc-dsbdalpha complex 71 d1j0ga_ not modelled 6.9 8 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:BM-002-like 72 c1fvoB_ not modelled 6.6 10 PDB header:transferase Chain: B: PDB Molecule:ornithine transcarbamylase; PDBTitle: crystal structure of human ornithine transcarbamylase complexed with2 carbamoyl phosphate 73 c3fmbA_ not modelled 6.4 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dimeric protein of unknown function and ferredoxin-like PDBTitle: crystal structure of dimeric protein of unknown function and2 ferredoxin-like fold (yp_212648.1) from bacteroides fragilis nctc3 9343 at 1.85 a resolution 74 c2dnfA_ not modelled 6.3 17 PDB header:protein binding Chain: A: PDB Molecule:doublecortin domain-containing protein 2; PDBTitle: solution structure of rsgi ruh-062, a dcx domain from human 75 c3d6nB_ not modelled 6.2 8 PDB header:hydrolase/transferase Chain: B: PDB Molecule:aspartate carbamoyltransferase; PDBTitle: crystal structure of aquifex dihydroorotase activated by aspartate2 transcarbamoylase 76 c2at2B_ not modelled 6.2 9 PDB header: PDB COMPND: 77 c2rgwD_ not modelled 6.1 6 PDB header:transferase Chain: D: PDB Molecule:aspartate carbamoyltransferase; PDBTitle: catalytic subunit of m. jannaschii aspartate2 transcarbamoylase 78 d1u2ma_ not modelled 6.1 11 Fold:OmpH-like Superfamily:OmpH-like Family:OmpH-like 79 c2k6pA_ not modelled 6.1 10 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein hp_1423; PDBTitle: solution structure of hypothetical protein, hp1423 80 d1p4da_ not modelled 6.1 8 Fold:Origin of replication-binding domain, RBD-like Superfamily:Origin of replication-binding domain, RBD-like Family:Relaxase domain 81 c2zaeC_ not modelled 6.0 8 PDB header:hydrolase Chain: C: PDB Molecule:ribonuclease p protein component 1; PDBTitle: crystal structure of protein ph1601p in complex with protein ph1771p2 of archaeal ribonuclease p from pyrococcus horikoshii ot3 82 d1duvg1 not modelled 5.8 6 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 83 c1zq2A_ not modelled 5.7 15 PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: crystal structure of n-acetyl-l-ornithine transcarbamylase2 complexed with cp 84 d1wira_ not modelled 5.4 20 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:variant C2H2 finger 85 d1ihwa_ not modelled 5.2 19 Fold:SH3-like barrel Superfamily:DNA-binding domain of retroviral integrase Family:DNA-binding domain of retroviral integrase 86 d1abaa_ not modelled 5.2 0 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 87 c1vlvA_ not modelled 5.2 17 PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: crystal structure of ornithine carbamoyltransferase (tm1097) from2 thermotoga maritima at 2.25 a resolution 88 d1oqka_ not modelled 5.2 10 Fold:Rof/RNase P subunit-like Superfamily:Rof/RNase P subunit-like Family:RNase P subunit p29-like 89 d1uf0a_ not modelled 5.2 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:Doublecortin (DC) Family:Doublecortin (DC) 90 d1wiia_ not modelled 5.2 17 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Putative zinc binding domain 91 c3tpfF_ not modelled 5.1 23 PDB header:transferase Chain: F: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: crystal structure of anabolic ornithine carbamoyltransferase from2 campylobacter jejuni subsp. jejuni nctc 11168 92 d2bo9b2 not modelled 5.1 23 Fold:Cystatin-like Superfamily:Cystatin/monellin Family:Latexin-like 93 c2p2gD_ not modelled 5.1 12 PDB header:transferase Chain: D: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: crystal structure of ornithine carbamoyltransferase from mycobacterium2 tuberculosis (rv1656): orthorhombic form

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0