Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	R	S	M	T	A	Y	A	R	R	E	I	K	G	E	W	G	S	A	T	W	E	M	R	S	V	N	Q	R	Y	L	E	T	Y	F	R	L	P	E	Q	F	R	S	L	E	P	V	V	R	E	R	I	R	S	R	L	T	R	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?		?	?	?			?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	V	E	C	T	L	R	Y	E	P	D	V	S	A	Q	G	E	L	I	L	N	E	K	L	A	K	Q	L	V	T	A	A	N	W	V	K	M	Q	S	D	E	G	E	I	N	P	V	D	I	L	R	W	P	G	V	M	A	A	Q	E
Secondary structure
SS confidence
Disorder											?	?	?	?	?	?	?	?																					?	?	?	?	?	?	?	?						?					?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	D	L	D	A	I	A	A	E	I	L	A	A	L	D	G	T	L	D	D	F	I	V	A	R	E	T	E	G	Q	A	L	K	A	L	I	E	Q	R	L	E	G	V	T	A	E	V	V	K	V	R	S	H	M	P	E	I	L	Q	W
Secondary structure
SS confidence
Disorder		?	?																																																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Q	R	E	R	L	V	A	K	L	E	D	A	Q	V	Q	L	E	N	N	R	L	E	Q	E	L	V	L	L	A	Q	R	I	D	V	A	E	E	L	D	R	L	E	A	H	V	K	E	T	Y	N	I	L	K	K	K	E	A	V	G	R
Secondary structure
SS confidence
Disorder														?		?																																							?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Sequence		R	L	D	F	M	M	Q	E	F	N	R	E	S	N	T	L	A	S	K	S	I	N	A	E	V	T	N	S	A	I	E	L	K	V	L	I	E	Q	M	R	E	Q	I	Q	N	I	E
Secondary structure
SS confidence
Disorder																																													?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1nt2 chain B Region: 193 - 285 Aligned: 79 Modelled: 79 Confidence: 35.9% Identity: 22% Fold: Nop domain Superfamily: Nop domain Family: Nop domain Phyre2 PDB 1jun chain B Region: 259 - 285 Aligned: 27 Modelled: 27 Confidence: 26.9% Identity: 26% PDB header:transcription regulation Chain: B: PDB Molecule:c-jun homodimer; PDBTitle: nmr study of c-jun homodimer Phyre2 PDB 1vcs chain A domain 1 Region: 121 - 192 Aligned: 72 Modelled: 72 Confidence: 25.4% Identity: 14% Fold: STAT-like Superfamily: t-snare proteins Family: t-snare proteins Phyre2 PDB 2gts chain A domain 1 Region: 215 - 232 Aligned: 18 Modelled: 18 Confidence: 24.9% Identity: 22% Fold: Ferritin-like Superfamily: HP0062-like Family: HP0062-like Phyre2 PDB 2xzm chain I Region: 6 - 119 Aligned: 105 Modelled: 105 Confidence: 24.5% Identity: 12% PDB header:ribosome Chain: I: PDB Molecule:rps16e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 Phyre2 PDB 3n4x chain B Region: 237 - 286 Aligned: 48 Modelled: 50 Confidence: 23.7% Identity: 17% PDB header:replication Chain: B: PDB Molecule:monopolin complex subunit csm1; PDBTitle: structure of csm1 full-length Phyre2 PDB 3swf chain A Region: 156 - 192 Aligned: 37 Modelled: 37 Confidence: 22.9% Identity: 16% PDB header:transport protein Chain: A: PDB Molecule:cgmp-gated cation channel alpha-1; PDBTitle: cnga1 621-690 containing clz domain Phyre2 PDB 1lvf chain A Region: 207 - 287 Aligned: 81 Modelled: 81 Confidence: 22.7% Identity: 15% Fold: STAT-like Superfamily: t-snare proteins Family: t-snare proteins Phyre2 PDB 2f3y chain B Region: 244 - 253 Aligned: 10 Modelled: 10 Confidence: 18.1% Identity: 40% PDB header:metal binding protein Chain: B: PDB Molecule:voltage-dependent l-type calcium channel alpha- PDBTitle: calmodulin/iq domain complex Phyre2 PDB 1t3j chain A Region: 211 - 250 Aligned: 40 Modelled: 40 Confidence: 17.1% Identity: 13% PDB header:membrane protein Chain: A: PDB Molecule:mitofusin 1; PDBTitle: mitofusin domain hr2 v686m/i708m mutant Phyre2 PDB 1wmi chain B domain 1 Region: 213 - 232 Aligned: 20 Modelled: 20 Confidence: 13.9% Identity: 35% Fold: Non-globular all-alpha subunits of globular proteins Superfamily: RelB-like Family: RelB-like Phyre2 PDB 2rpa chain A Region: 245 - 280 Aligned: 36 Modelled: 36 Confidence: 13.7% Identity: 11% PDB header:hydrolase Chain: A: PDB Molecule:katanin p60 atpase-containing subunit a1; PDBTitle: the solution structure of n-terminal domain of microtubule severing2 enzyme Phyre2 PDB 3onj chain A Region: 124 - 192 Aligned: 69 Modelled: 69 Confidence: 13.5% Identity: 13% PDB header:protein transport Chain: A: PDB Molecule:t-snare vti1; PDBTitle: crystal structure of yeast vti1p_habc domain Phyre2 PDB 1wgd chain A Region: 13 - 50 Aligned: 38 Modelled: 38 Confidence: 12.7% Identity: 13% Fold: beta-Grasp (ubiquitin-like) Superfamily: Ubiquitin-like Family: Ubiquitin-related Phyre2 PDB 3sak chain A Region: 248 - 254 Aligned: 7 Modelled: 7 Confidence: 12.0% Identity: 57% Fold: p53 tetramerization domain Superfamily: p53 tetramerization domain Family: p53 tetramerization domain Phyre2 PDB 3q9d chain B Region: 213 - 232 Aligned: 20 Modelled: 20 Confidence: 11.9% Identity: 30% PDB header:unknown function Chain: B: PDB Molecule:protein cpn_0803/cp_1068/cpj0803/cpb0832; PDBTitle: crystal structure of cpn0803 from c. pneumoniae. Phyre2 PDB 3n1b chain A Region: 168 - 212 Aligned: 45 Modelled: 45 Confidence: 11.7% Identity: 9% PDB header:transport protein Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 54; PDBTitle: c-terminal domain of vps54 subunit of the garp complex Phyre2 PDB 2vay chain B Region: 244 - 253 Aligned: 10 Modelled: 10 Confidence: 10.4% Identity: 40% PDB header:metal transport Chain: B: PDB Molecule:voltage-dependent l-type calcium channel subunit PDBTitle: calmodulin complexed with cav1.1 iq peptide Phyre2 PDB 3f42 chain A Region: 113 - 152 Aligned: 36 Modelled: 39 Confidence: 10.1% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein hp0035; PDBTitle: crystal structure of uncharacterized protein hp0035 from helicobacter2 pylori Phyre2 PDB 1a9x chain B domain 1 Region: 4 - 8 Aligned: 5 Modelled: 5 Confidence: 9.8% Identity: 80% Fold: The "swivelling" beta/beta/alpha domain Superfamily: Carbamoyl phosphate synthetase, small subunit N-terminal domain Family: Carbamoyl phosphate synthetase, small subunit N-terminal domain Phyre2 1 d1nt2b_ 2 c1junB_ 3 d1vcsa1 4 d2gtsa1 5 c2xzmI_ 6 c3n4xB_ 7 c3swfA_ 8 d1lvfa_ 9 c2f3yB_ 10 c1t3jA_ 11 d1wmib1 12 c2rpaA_ 13 c3onjA_ 14 d1wgda_ 15 d3saka_ 16 c3q9dB_ 17 c3n1bA_ 18 c2vayB_ 19 c3f42A_ 20 d1a9xb1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1nt2b_ 35.9 22 Fold:Nop domain Superfamily:Nop domain Family:Nop domain 2 c1junB_ 26.9 26 PDB header:transcription regulation Chain: B: PDB Molecule:c-jun homodimer; PDBTitle: nmr study of c-jun homodimer 3 d1vcsa1 25.4 14 Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins 4 d2gtsa1 24.9 22 Fold:Ferritin-like Superfamily:HP0062-like Family:HP0062-like 5 c2xzmI_ 24.5 12 PDB header:ribosome Chain: I: PDB Molecule:rps16e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 6 c3n4xB_ 23.7 17 PDB header:replication Chain: B: PDB Molecule:monopolin complex subunit csm1; PDBTitle: structure of csm1 full-length 7 c3swfA_ 22.9 16 PDB header:transport protein Chain: A: PDB Molecule:cgmp-gated cation channel alpha-1; PDBTitle: cnga1 621-690 containing clz domain 8 d1lvfa_ 22.7 15 Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins 9 c2f3yB_ 18.1 40 PDB header:metal binding protein Chain: B: PDB Molecule:voltage-dependent l-type calcium channel alpha- PDBTitle: calmodulin/iq domain complex 10 c1t3jA_ 17.1 13 PDB header:membrane protein Chain: A: PDB Molecule:mitofusin 1; PDBTitle: mitofusin domain hr2 v686m/i708m mutant 11 d1wmib1 13.9 35 Fold:Non-globular all-alpha subunits of globular proteins Superfamily:RelB-like Family:RelB-like 12 c2rpaA_ 13.7 11 PDB header:hydrolase Chain: A: PDB Molecule:katanin p60 atpase-containing subunit a1; PDBTitle: the solution structure of n-terminal domain of microtubule severing2 enzyme 13 c3onjA_ 13.5 13 PDB header:protein transport Chain: A: PDB Molecule:t-snare vti1; PDBTitle: crystal structure of yeast vti1p_habc domain 14 d1wgda_ 12.7 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 15 d3saka_ 12.0 57 Fold:p53 tetramerization domain Superfamily:p53 tetramerization domain Family:p53 tetramerization domain 16 c3q9dB_ 11.9 30 PDB header:unknown function Chain: B: PDB Molecule:protein cpn_0803/cp_1068/cpj0803/cpb0832; PDBTitle: crystal structure of cpn0803 from c. pneumoniae. 17 c3n1bA_ 11.7 9 PDB header:transport protein Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 54; PDBTitle: c-terminal domain of vps54 subunit of the garp complex 18 c2vayB_ 10.4 40 PDB header:metal transport Chain: B: PDB Molecule:voltage-dependent l-type calcium channel subunit PDBTitle: calmodulin complexed with cav1.1 iq peptide 19 c3f42A_ 10.1 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein hp0035; PDBTitle: crystal structure of uncharacterized protein hp0035 from helicobacter2 pylori 20 d1a9xb1 9.8 80 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Carbamoyl phosphate synthetase, small subunit N-terminal domain Family:Carbamoyl phosphate synthetase, small subunit N-terminal domain 21 c2jroA_ not modelled 9.2 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of so0334 from shewanella oneidensis. northeast2 structural genomics target sor75 22 d2elba1 not modelled 9.1 12 Fold:BAR/IMD domain-like Superfamily:BAR/IMD domain-like Family:BAR domain 23 c2j11D_ not modelled 8.9 57 PDB header:transcription Chain: D: PDB Molecule:cellular tumor antigen p53; PDBTitle: p53 tetramerization domain mutant y327s t329g q331g 24 c1gngX_ not modelled 8.8 35 PDB header:transferase Chain: X: PDB Molecule:frattide; PDBTitle: glycogen synthase kinase-3 beta (gsk3) complex with frattide2 peptide 25 c3r2cJ_ not modelled 8.7 21 PDB header:transcription/rna Chain: J: PDB Molecule:30s ribosomal protein s10; PDBTitle: crystal structure of antitermination factors nusb and nuse in complex2 with boxa rna 26 c2ywfA_ not modelled 8.4 17 PDB header:translation Chain: A: PDB Molecule:gtp-binding protein lepa; PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus 27 d1aiea_ not modelled 8.1 57 Fold:p53 tetramerization domain Superfamily:p53 tetramerization domain Family:p53 tetramerization domain 28 c1mpgB_ not modelled 7.9 26 PDB header:hydrolase Chain: B: PDB Molecule:3-methyladenine dna glycosylase ii; PDBTitle: 3-methyladenine dna glycosylase ii from escherichia coli 29 d1we3a2 not modelled 7.9 18 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 30 c2j10D_ not modelled 7.7 57 PDB header:transcription Chain: D: PDB Molecule:cellular tumor antigen p53; PDBTitle: p53 tetramerization domain mutant t329f q331k 31 c2j10B_ not modelled 7.7 57 PDB header:transcription Chain: B: PDB Molecule:cellular tumor antigen p53; PDBTitle: p53 tetramerization domain mutant t329f q331k 32 c2j10A_ not modelled 7.7 57 PDB header:transcription Chain: A: PDB Molecule:cellular tumor antigen p53; PDBTitle: p53 tetramerization domain mutant t329f q331k 33 d3bypa1 not modelled 7.5 15 Fold:Alpha-lytic protease prodomain-like Superfamily:Cation efflux protein cytoplasmic domain-like Family:Cation efflux protein cytoplasmic domain-like 34 c2zkqi_ not modelled 7.5 22 PDB header:ribosomal protein/rna Chain: I: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 35 c4a4kI_ not modelled 7.5 12 PDB header:hydrolase Chain: I: PDB Molecule:antiviral helicase ski2; PDBTitle: crystal structure of the s. cerevisiae ski2 insertion domain 36 d1jjcb2 not modelled 7.5 33 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Domains B1 and B5 of PheRS-beta, PheT 37 c3n6sA_ not modelled 7.5 24 PDB header:transcription, replication/dna Chain: A: PDB Molecule:transcription termination factor, mitochondrial; PDBTitle: crystal structure of human mitochondrial mterf in complex with a 15-2 mer dna encompassing the trnaleu(uur) binding sequence 38 c1keeH_ not modelled 7.4 80 PDB header:ligase Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain; PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin 39 d1z1va1 not modelled 7.4 50 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 40 d1g3nc2 not modelled 7.2 50 Fold:Cyclin-like Superfamily:Cyclin-like Family:Cyclin 41 c2it3B_ not modelled 7.2 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:upf0130 protein ph1069; PDBTitle: structure of ph1069 protein from pyrococcus horikoshii 42 c3eabK_ not modelled 7.1 31 PDB header:cell cycle Chain: K: PDB Molecule:chmp1b; PDBTitle: crystal structure of spastin mit in complex with escrt iii 43 c1lj2C_ not modelled 7.0 50 PDB header:viral protein/ translation Chain: C: PDB Molecule:eukaryotic protein synthesis initiation factor; PDBTitle: recognition of eif4g by rotavirus nsp3 reveals a basis for2 mrna circularization 44 c2kdbA_ not modelled 6.9 13 PDB header:protein binding Chain: A: PDB Molecule:homocysteine-responsive endoplasmic reticulum- PDBTitle: solution structure of human ubiquitin-like domain of2 herpud2_9_85, northeast structural genomics consortium3 (nesg) target ht53a 45 d1k1fa_ not modelled 6.8 22 Fold:Bcr-Abl oncoprotein oligomerization domain Superfamily:Bcr-Abl oncoprotein oligomerization domain Family:Bcr-Abl oncoprotein oligomerization domain 46 c3n5aA_ not modelled 6.8 31 PDB header:protein transport Chain: A: PDB Molecule:synaptotagmin-7; PDBTitle: synaptotagmin-7, c2b-domain, calcium bound 47 c3kizA_ not modelled 6.7 16 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of putative phosphoribosylformylglycinamidine cyclo-2 ligase (yp_676759.1) from cytophaga hutchinsonii atcc 33406 at 1.50 a3 resolution 48 d1kida_ not modelled 6.7 19 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 49 d1sjpa2 not modelled 6.7 19 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 50 c3p8cD_ not modelled 6.6 10 PDB header:protein binding Chain: D: PDB Molecule:wiskott-aldrich syndrome protein family member 1; PDBTitle: structure and control of the actin regulatory wave complex 51 c1lj2D_ not modelled 6.6 50 PDB header:viral protein/ translation Chain: D: PDB Molecule:eukaryotic protein synthesis initiation factor; PDBTitle: recognition of eif4g by rotavirus nsp3 reveals a basis for2 mrna circularization 52 c2elxA_ not modelled 6.6 44 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 8th c2h2 zinc finger of mouse2 zinc finger protein 406 53 d2oufa1 not modelled 6.4 18 Fold:HP0242-like Superfamily:HP0242-like Family:HP0242-like 54 c3ks7D_ not modelled 6.4 22 PDB header:hydrolase Chain: D: PDB Molecule:putative putative pngase f; PDBTitle: crystal structure of putative peptide:n-glycosidase f (pngase f)2 (yp_210507.1) from bacteroides fragilis nctc 9343 at 2.30 a3 resolution 55 d1g73a_ not modelled 6.4 14 Fold:Spectrin repeat-like Superfamily:Smac/diablo Family:Smac/diablo 56 d1igqa_ not modelled 6.1 14 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:Transcriptional repressor protein KorB 57 d3efza1 not modelled 6.1 8 Fold:alpha-alpha superhelix Superfamily:14-3-3 protein Family:14-3-3 protein 58 c3efzA_ not modelled 6.1 8 PDB header:signaling protein Chain: A: PDB Molecule:14-3-3 protein; PDBTitle: crystal structure of a 14-3-3 protein from cryptosporidium parvum2 (cgd1_2980) 59 c3swyB_ not modelled 6.0 12 PDB header:transport protein Chain: B: PDB Molecule:cyclic nucleotide-gated cation channel alpha-3; PDBTitle: cnga3 626-672 containing clz domain 60 c3c19A_ not modelled 6.0 6 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mk0293; PDBTitle: crystal structure of protein mk0293 from methanopyrus kandleri av19 61 c1gw4A_ not modelled 6.0 31 PDB header:high density lipoproteins Chain: A: PDB Molecule:apoa-i; PDBTitle: the helix-hinge-helix structural motif in human2 apolipoprotein a-i determined by nmr spectroscopy, 13 structure 62 d1dula_ not modelled 6.0 50 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 63 d1igub_ not modelled 5.9 14 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:Transcriptional repressor protein KorB 64 d1fewa_ not modelled 5.8 14 Fold:Spectrin repeat-like Superfamily:Smac/diablo Family:Smac/diablo 65 c1zvaA_ not modelled 5.8 13 PDB header:viral protein Chain: A: PDB Molecule:e2 glycoprotein; PDBTitle: a structure-based mechanism of sars virus membrane fusion 66 c1jqmA_ not modelled 5.8 5 PDB header:ribosome Chain: A: PDB Molecule:50s ribosomal protein l11; PDBTitle: fitting of l11 protein and elongation factor g (ef-g) in2 the cryo-em map of e. coli 70s ribosome bound with ef-g,3 gdp and fusidic acid 67 c1rrqA_ not modelled 5.8 26 PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair 68 d1ip9a_ not modelled 5.8 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 69 d1orja_ not modelled 5.8 14 Fold:Four-helical up-and-down bundle Superfamily:Flagellar export chaperone FliS Family:Flagellar export chaperone FliS 70 c3bboK_ not modelled 5.7 13 PDB header:ribosome Chain: K: PDB Molecule:ribosomal protein l11; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 71 c3degC_ not modelled 5.7 17 PDB header:ribosome Chain: C: PDB Molecule:gtp-binding protein lepa; PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp 72 c3cb4D_ not modelled 5.6 17 PDB header:translation Chain: D: PDB Molecule:gtp-binding protein lepa; PDBTitle: the crystal structure of lepa 73 d1a1ua_ not modelled 5.3 57 Fold:p53 tetramerization domain Superfamily:p53 tetramerization domain Family:p53 tetramerization domain 74 d1dfca1 not modelled 5.3 56 Fold:beta-Trefoil Superfamily:Actin-crosslinking proteins Family:Fascin 75 c2v8sV_ not modelled 5.2 11 PDB header:protein transport Chain: V: PDB Molecule:vesicle transport through interaction with PDBTitle: vti1b habc domain - epsinr enth domain complex 76 c2be6F_ not modelled 5.2 40 PDB header:membrane protein Chain: F: PDB Molecule:voltage-dependent l-type calcium channel alpha-1c subunit; PDBTitle: 2.0 a crystal structure of the cav1.2 iq domain-ca/cam complex 77 d1js8a2 not modelled 5.2 5 Fold:C-terminal domain of mollusc hemocyanin Superfamily:C-terminal domain of mollusc hemocyanin Family:C-terminal domain of mollusc hemocyanin 78 c1bf5A_ not modelled 5.2 16 PDB header:gene regulation/dna Chain: A: PDB Molecule:signal transducer and activator of transcription PDBTitle: tyrosine phosphorylated stat-1/dna complex 79 c3okqA_ not modelled 5.1 21 PDB header:protein binding Chain: A: PDB Molecule:bud site selection protein 6; PDBTitle: crystal structure of a core domain of yeast actin nucleation cofactor2 bud6

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0