Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0ADY1
DateThu Jan 5 11:22:05 GMT 2012
Unique Job IDae0950031df61d5c

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1m5yB_
Top template information
PDB header:isomerase, cell cycle
Chain: B: PDB Molecule:survival protein sura;
PDBTitle: crystallographic structure of sura, a molecular chaperone2 that facilitates outer membrane porin folding
Confidence and coverage
Confidence:100.0% Coverage: 54%
336 residues ( 54% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNYAAKVNDQEISRGQFENAFN
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   .........70.........80.........90.........100.........110.........120
Sequence  SERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQA
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   .........130.........140.........150.........160.........170.........180
Sequence  IFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGET
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?
??
??
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   .........190.........200.........210.........220.........230.........240
Sequence  DELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDA
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???
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???








????
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   .........250.........260.........270.........280.........290.........300
Sequence  ATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAK
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   .........310.........320.........330.........340.........350.........360
Sequence  EKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAK
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???????????











































???
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   .........370.........380.........390.........400.........410.........420
Sequence  VKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDTESLAGAEQAAGVKATQTGWFS
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???????





??


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   .........430.........440.........450.........460.........470.........480
Sequence  KDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEHKPEAVKPLA
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   .........490.........500.........510.........520.........530.........540
Sequence  DVQEQVKALVQHNKAEQQAKVDAEKLLVDLKAGKGAEAMQAAGLKFGEPKTLSRSGRDPI
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??





??????????????????
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   .........550.........560.........570.........580.........590.........600
Sequence  SQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQKKAMVQGITQNNAQIV
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?????????????















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   .........610.........620...
Sequence  FEALMSNLRKEAKIKIGDALEQQ
Secondary structure 





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??
?
?


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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1m5y chain B

3D model

Region: 39 - 396
Aligned: 336
Modelled: 350
Confidence: 100.0%
Identity: 22%
PDB header:isomerase, cell cycle
Chain: B: PDB Molecule:survival protein sura;
PDBTitle: crystallographic structure of sura, a molecular chaperone2 that facilitates outer membrane porin folding

Phyre2

PDB 3nrk chain A

3D model

Region: 39 - 396
Aligned: 284
Modelled: 296
Confidence: 100.0%
Identity: 21%
PDB header:unknown function
Chain: A: PDB Molecule:lic12922;
PDBTitle: the crystal structure of the leptospiral hypothetical protein lic12922

Phyre2

PDB 2pv3 chain B

3D model

Region: 39 - 396
Aligned: 277
Modelled: 297
Confidence: 100.0%
Identity: 26%
PDB header:isomerase
Chain: B: PDB Molecule:chaperone sura;
PDBTitle: crystallographic structure of sura fragment lacking the second2 peptidyl-prolyl isomerase domain complexed with peptide nftlkfwdifrk

Phyre2

PDB 3rgc chain B

3D model

Region: 39 - 396
Aligned: 245
Modelled: 247
Confidence: 100.0%
Identity: 16%
PDB header:chaperone
Chain: B: PDB Molecule:possible periplasmic protein;
PDBTitle: the virulence factor peb4 and the periplasmic protein cj1289 are two2 structurally related sura-like chaperones in the human pathogen3 campylobacter jejuni

Phyre2

PDB 3rfw chain A

3D model

Region: 40 - 396
Aligned: 240
Modelled: 252
Confidence: 100.0%
Identity: 26%
PDB header:chaperone
Chain: A: PDB Molecule:cell-binding factor 2;
PDBTitle: the virulence factor peb4 and the periplasmic protein cj1289 are two2 structurally-related sura-like chaperones in the human pathogen3 campylobacter jejuni

Phyre2

PDB 1m5y chain A domain 1

3D model

Region: 39 - 288
Aligned: 162
Modelled: 165
Confidence: 99.9%
Identity: 24%
Fold: Triger factor/SurA peptide-binding domain-like
Superfamily: Triger factor/SurA peptide-binding domain-like
Family: Porin chaperone SurA, peptide-binding domain

Phyre2

PDB 2kgj chain A

3D model

Region: 264 - 362
Aligned: 99
Modelled: 99
Confidence: 99.8%
Identity: 96%
PDB header:isomerase
Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase d;
PDBTitle: solution structure of parvulin domain of ppid from e.coli

Phyre2

PDB 2rqs chain A

3D model

Region: 264 - 355
Aligned: 92
Modelled: 92
Confidence: 99.8%
Identity: 28%
PDB header:isomerase
Chain: A: PDB Molecule:parvulin-like peptidyl-prolyl isomerase;
PDBTitle: 3d structure of pin from the psychrophilic archeon cenarcheaum2 symbiosum (cspin)

Phyre2

PDB 1pin chain A domain 2

3D model

Region: 259 - 355
Aligned: 96
Modelled: 97
Confidence: 99.8%
Identity: 25%
Fold: FKBP-like
Superfamily: FKBP-like
Family: FKBP immunophilin/proline isomerase

Phyre2

PDB 1jns chain A

3D model

Region: 267 - 356
Aligned: 89
Modelled: 90
Confidence: 99.8%
Identity: 22%
Fold: FKBP-like
Superfamily: FKBP-like
Family: FKBP immunophilin/proline isomerase

Phyre2

PDB 1yw5 chain A

3D model

Region: 206 - 355
Aligned: 138
Modelled: 150
Confidence: 99.8%
Identity: 18%
PDB header:isomerase
Chain: A: PDB Molecule:peptidyl prolyl cis/trans isomerase;
PDBTitle: peptidyl-prolyl isomerase ess1 from candida albicans

Phyre2

PDB 2jzv chain A

3D model

Region: 265 - 355
Aligned: 91
Modelled: 91
Confidence: 99.8%
Identity: 33%
PDB header:isomerase
Chain: A: PDB Molecule:foldase protein prsa;
PDBTitle: solution structure of s. aureus prsa-ppiase

Phyre2

PDB 1eq3 chain A

3D model

Region: 267 - 357
Aligned: 89
Modelled: 91
Confidence: 99.8%
Identity: 20%
Fold: FKBP-like
Superfamily: FKBP-like
Family: FKBP immunophilin/proline isomerase

Phyre2

PDB 1m5y chain A domain 3

3D model

Region: 265 - 358
Aligned: 94
Modelled: 94
Confidence: 99.8%
Identity: 31%
Fold: FKBP-like
Superfamily: FKBP-like
Family: FKBP immunophilin/proline isomerase

Phyre2

PDB 3gpk chain A

3D model

Region: 267 - 361
Aligned: 94
Modelled: 95
Confidence: 99.8%
Identity: 32%
PDB header:isomerase
Chain: A: PDB Molecule:ppic-type peptidyl-prolyl cis-trans isomerase;
PDBTitle: crystal structure of ppic-type peptidyl-prolyl cis-trans isomerase2 domain at 1.55a resolution.

Phyre2

PDB 1j6y chain A

3D model

Region: 263 - 355
Aligned: 92
Modelled: 93
Confidence: 99.8%
Identity: 24%
Fold: FKBP-like
Superfamily: FKBP-like
Family: FKBP immunophilin/proline isomerase

Phyre2

PDB 1zk6 chain A

3D model

Region: 268 - 356
Aligned: 89
Modelled: 89
Confidence: 99.8%
Identity: 25%
PDB header:isomerase
Chain: A: PDB Molecule:foldase protein prsa;
PDBTitle: nmr solution structure of b. subtilis prsa ppiase

Phyre2

PDB 1f8a chain B

3D model

Region: 259 - 355
Aligned: 96
Modelled: 97
Confidence: 99.8%
Identity: 24%
PDB header:isomerase
Chain: B: PDB Molecule:peptidyl-prolyl cis-trans isomerase nima-
PDBTitle: structural basis for the phosphoserine-proline recognition2 by group iv ww domains

Phyre2

PDB 2pv2 chain A domain 1

3D model

Region: 268 - 357
Aligned: 89
Modelled: 90
Confidence: 99.7%
Identity: 38%
Fold: FKBP-like
Superfamily: FKBP-like
Family: FKBP immunophilin/proline isomerase

Phyre2

PDB 3gty chain X

3D model

Region: 49 - 176
Aligned: 121
Modelled: 128
Confidence: 97.2%
Identity: 15%
PDB header:chaperone/ribosomal protein
Chain: X: PDB Molecule:trigger factor;
PDBTitle: promiscuous substrate recognition in folding and assembly activities2 of the trigger factor chaperone

Phyre2
1

c1m5yB_
2

c3nrkA_
3

c2pv3B_
4

c3rgcB_
5

c3rfwA_
6

d1m5ya1
7

c2kgjA_
8

c2rqsA_
9

d1pina2
10

d1jnsa_
11

c1yw5A_
12

c2jzvA_
13

d1eq3a_
14

d1m5ya3
15

c3gpkA_
16

d1j6ya_
17

c1zk6A_
18

c1f8aB_
19

d2pv2a1
20

c3gtyX_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1m5yB_



100.0 22 PDB header:isomerase, cell cycle
Chain: B: PDB Molecule:survival protein sura;
PDBTitle: crystallographic structure of sura, a molecular chaperone2 that facilitates outer membrane porin folding
2c3nrkA_



100.0 21 PDB header:unknown function
Chain: A: PDB Molecule:lic12922;
PDBTitle: the crystal structure of the leptospiral hypothetical protein lic12922
3c2pv3B_



100.0 26 PDB header:isomerase
Chain: B: PDB Molecule:chaperone sura;
PDBTitle: crystallographic structure of sura fragment lacking the second2 peptidyl-prolyl isomerase domain complexed with peptide nftlkfwdifrk
4c3rgcB_



100.0 16 PDB header:chaperone
Chain: B: PDB Molecule:possible periplasmic protein;
PDBTitle: the virulence factor peb4 and the periplasmic protein cj1289 are two2 structurally related sura-like chaperones in the human pathogen3 campylobacter jejuni
5c3rfwA_



100.0 26 PDB header:chaperone
Chain: A: PDB Molecule:cell-binding factor 2;
PDBTitle: the virulence factor peb4 and the periplasmic protein cj1289 are two2 structurally-related sura-like chaperones in the human pathogen3 campylobacter jejuni
6d1m5ya1



99.9 24 Fold:Triger factor/SurA peptide-binding domain-like
Superfamily:Triger factor/SurA peptide-binding domain-like
Family:Porin chaperone SurA, peptide-binding domain
7c2kgjA_



99.8 96 PDB header:isomerase
Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase d;
PDBTitle: solution structure of parvulin domain of ppid from e.coli
8c2rqsA_



99.8 28 PDB header:isomerase
Chain: A: PDB Molecule:parvulin-like peptidyl-prolyl isomerase;
PDBTitle: 3d structure of pin from the psychrophilic archeon cenarcheaum2 symbiosum (cspin)
9d1pina2



99.8 25 Fold:FKBP-like
Superfamily:FKBP-like
Family:FKBP immunophilin/proline isomerase
10d1jnsa_



99.8 22 Fold:FKBP-like
Superfamily:FKBP-like
Family:FKBP immunophilin/proline isomerase
11c1yw5A_



99.8 18 PDB header:isomerase
Chain: A: PDB Molecule:peptidyl prolyl cis/trans isomerase;
PDBTitle: peptidyl-prolyl isomerase ess1 from candida albicans
12c2jzvA_



99.8 33 PDB header:isomerase
Chain: A: PDB Molecule:foldase protein prsa;
PDBTitle: solution structure of s. aureus prsa-ppiase
13d1eq3a_



99.8 20 Fold:FKBP-like
Superfamily:FKBP-like
Family:FKBP immunophilin/proline isomerase
14d1m5ya3



99.8 31 Fold:FKBP-like
Superfamily:FKBP-like
Family:FKBP immunophilin/proline isomerase
15c3gpkA_



99.8 32 PDB header:isomerase
Chain: A: PDB Molecule:ppic-type peptidyl-prolyl cis-trans isomerase;
PDBTitle: crystal structure of ppic-type peptidyl-prolyl cis-trans isomerase2 domain at 1.55a resolution.
16d1j6ya_



99.8 24 Fold:FKBP-like
Superfamily:FKBP-like
Family:FKBP immunophilin/proline isomerase
17c1zk6A_



99.8 25 PDB header:isomerase
Chain: A: PDB Molecule:foldase protein prsa;
PDBTitle: nmr solution structure of b. subtilis prsa ppiase
18c1f8aB_



99.8 24 PDB header:isomerase
Chain: B: PDB Molecule:peptidyl-prolyl cis-trans isomerase nima-
PDBTitle: structural basis for the phosphoserine-proline recognition2 by group iv ww domains
19d2pv2a1



99.7 38 Fold:FKBP-like
Superfamily:FKBP-like
Family:FKBP immunophilin/proline isomerase
20c3gtyX_



97.2 15 PDB header:chaperone/ribosomal protein
Chain: X: PDB Molecule:trigger factor;
PDBTitle: promiscuous substrate recognition in folding and assembly activities2 of the trigger factor chaperone
21c2nsaA_



not modelled 97.1 15 PDB header:chaperone
Chain: A: PDB Molecule:trigger factor;
PDBTitle: structures of and interactions between domains of trigger factor from2 themotoga maritim
22c1w26B_



not modelled 96.9 17 PDB header:chaperone
Chain: B: PDB Molecule:trigger factor;
PDBTitle: trigger factor in complex with the ribosome forms a2 molecular cradle for nascent proteins
23d1w26a1



not modelled 96.6 17 Fold:Triger factor/SurA peptide-binding domain-like
Superfamily:Triger factor/SurA peptide-binding domain-like
Family:TF C-terminus
24c1t11A_



not modelled 94.8 21 PDB header:chaperone
Chain: A: PDB Molecule:trigger factor;
PDBTitle: trigger factor
25d1t11a1



not modelled 94.2 21 Fold:Triger factor/SurA peptide-binding domain-like
Superfamily:Triger factor/SurA peptide-binding domain-like
Family:TF C-terminus
26c2fcdA_



not modelled 35.0 16 PDB header:cell cycle
Chain: A: PDB Molecule:myosin light chain 1;
PDBTitle: solution structure of n-lobe myosin light chain from2 saccharomices cerevisiae
27d1wdcb_



not modelled 25.9 14 Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
28c2dguA_



not modelled 20.7 16 PDB header:rna binding protein
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein q;
PDBTitle: solution structure of the rna binding domain in2 heterogeneous nuclear ribonucleoprotein q
29c2osqA_



not modelled 18.0 6 PDB header:rna binding protein
Chain: A: PDB Molecule:nucleolar protein 3;
PDBTitle: nmr structure of rrm-1 of yeast npl3 protein
30c3fkkA_



not modelled 15.7 21 PDB header:lyase
Chain: A: PDB Molecule:l-2-keto-3-deoxyarabonate dehydratase;
PDBTitle: structure of l-2-keto-3-deoxyarabonate dehydratase
31c2phcB_



not modelled 14.9 36 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein ph0987;
PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii
32c3mmlD_



not modelled 14.4 18 PDB header:hydrolase
Chain: D: PDB Molecule:allophanate hydrolase subunit 1;
PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436
33c2dgtA_



not modelled 12.6 6 PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein 30;
PDBTitle: solution structure of the second rna binding domain in rna-2 binding protein 30
34c2zp2B_



not modelled 12.5 18 PDB header:transferase inhibitor
Chain: B: PDB Molecule:kinase a inhibitor;
PDBTitle: c-terminal domain of kipi from bacillus subtilis
35d1wrka1



not modelled 12.1 16 Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
36c3ipdB_



not modelled 11.5 21 PDB header:exocytosis
Chain: B: PDB Molecule:syntaxin-1a;
PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21
37c1slmA_



not modelled 11.1 24 PDB header:hydrolase
Chain: A: PDB Molecule:stromelysin-1;
PDBTitle: crystal structure of fibroblast stromelysin-1: the c-truncated human2 proenzyme
38d2phcb1



not modelled 11.1 36 Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:PH0987 C-terminal domain-like
39d1u14a_



not modelled 10.9 15 Fold:Anticodon-binding domain-like
Superfamily:ITPase-like
Family:YjjX-like
40d1j7ga_



not modelled 10.6 6 Fold:DTD-like
Superfamily:DTD-like
Family:DTD-like
41d1sknp_



not modelled 10.4 21 Fold:A DNA-binding domain in eukaryotic transcription factors
Superfamily:A DNA-binding domain in eukaryotic transcription factors
Family:A DNA-binding domain in eukaryotic transcription factors
42d1ggwa_



not modelled 10.1 16 Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
43d1zata2



not modelled 10.0 18 Fold:L,D-transpeptidase pre-catalytic domain-like
Superfamily:L,D-transpeptidase pre-catalytic domain-like
Family:L,D-transpeptidase pre-catalytic domain-like
44c2dnqA_



not modelled 9.7 12 PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein 4b;
PDBTitle: solution structure of rna binding domain 1 in rna-binding2 protein 30
45c2dnpA_



not modelled 9.3 16 PDB header:transcription
Chain: A: PDB Molecule:rna-binding protein 14;
PDBTitle: solution structure of rna binding domain 2 in rna-binding2 protein 14
46c2jvoA_



not modelled 8.6 6 PDB header:rna binding protein
Chain: A: PDB Molecule:nucleolar protein 3;
PDBTitle: segmental isotope labeling of npl3
47c2ekwC_



not modelled 8.5 15 PDB header:contractile protein
Chain: C: PDB Molecule:myosin catalytic light chain lc-1, mantle muscle;
PDBTitle: the crystal structure of squid myosin s1 in the presence of2 so4 2-
48d1qv0a_



not modelled 8.4 11 Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
49d1oqpa_



not modelled 8.3 20 Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
50d2cxaa1



not modelled 8.1 22 Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:LFTR-like
51c2cxaA_



not modelled 8.1 22 PDB header:transferase
Chain: A: PDB Molecule:leucyl/phenylalanyl-trna-protein transferase;
PDBTitle: crystal structure of leucyl/phenylalanyl-trna protein2 transferase from escherichia coli
52d1wi6a1



not modelled 8.1 6 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
53c2kz2A_



not modelled 8.0 21 PDB header:metal binding protein
Chain: A: PDB Molecule:calmodulin;
PDBTitle: calmodulin, c-terminal domain, f92e mutant
54c2oy6B_



not modelled 7.8 19 PDB header:contractile protein
Chain: B: PDB Molecule:myosin regulatory light chain lc-2;
PDBTitle: crystal structure of squid mg.adp myosin s1
55c2d58A_



not modelled 7.7 12 PDB header:metal binding protein
Chain: A: PDB Molecule:allograft inflammatory factor 1;
PDBTitle: human microglia-specific protein iba1
56d2e74h1



not modelled 7.7 11 Fold:Single transmembrane helix
Superfamily:PetN subunit of the cytochrome b6f complex
Family:PetN subunit of the cytochrome b6f complex
57c1vf5H_



not modelled 7.5 13 PDB header:photosynthesis
Chain: H: PDB Molecule:protein pet n;
PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus
58c1vf5U_



not modelled 7.5 13 PDB header:photosynthesis
Chain: U: PDB Molecule:protein pet n;
PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus
59c2d2cU_



not modelled 7.5 13 PDB header:photosynthesis
Chain: U: PDB Molecule:cytochrome b6-f complex subunit viii;
PDBTitle: crystal structure of cytochrome b6f complex with dbmib from2 m. laminosus
60c2d2cH_



not modelled 7.5 13 PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit viii;
PDBTitle: crystal structure of cytochrome b6f complex with dbmib from2 m. laminosus
61d1fw4a_



not modelled 7.5 20 Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
62c2a4jA_



not modelled 7.5 22 PDB header:structural protein
Chain: A: PDB Molecule:centrin 2;
PDBTitle: solution structure of the c-terminal domain (t94-y172) of2 the human centrin 2 in complex with a 17 residues peptide3 (p1-xpc) from xeroderma pigmentosum group c protein
63c3eb2A_



not modelled 7.5 12 PDB header:lyase
Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 2.0a resolution
64c3sibA_



not modelled 7.5 16 PDB header:dna binding protein
Chain: A: PDB Molecule:ure3-bp sequence specific dna binding protein;
PDBTitle: crystal structure of ure3-binding protein, wild-type
65c2e76H_



not modelled 7.3 11 PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
66c2e75H_



not modelled 7.3 11 PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus
67c2e74H_



not modelled 7.3 11 PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus
68d1c07a_



not modelled 7.2 13 Fold:EF Hand-like
Superfamily:EF-hand
Family:Eps15 homology domain (EH domain)
69d2hg7a1



not modelled 7.0 16 Fold:gpW/XkdW-like
Superfamily:XkdW-like
Family:XkdW-like
70c2hg7A_



not modelled 7.0 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:phage-like element pbsx protein xkdw;
PDBTitle: solution nmr structure of phage-like element pbsx protein2 xkdw, northeast structural genomics consortium target sr355
71c3oepA_



not modelled 6.9 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative uncharacterized protein ttha0988;
PDBTitle: crystal structure of ttha0988 in space group p43212
72d1lkja_



not modelled 6.9 13 Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
73d1wg1a_



not modelled 6.9 6 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
74d1ap4a_



not modelled 6.8 16 Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
75c2kz5A_



not modelled 6.8 15 PDB header:transcription
Chain: A: PDB Molecule:transcription factor nf-e2 45 kda subunit;
PDBTitle: solution nmr structure of transcription factor nf-e2 subunit's dna2 binding domain from homo sapiens, northeast structural genomics3 consortium target hr4653b
76c1djyB_



not modelled 6.7 10 PDB header:lipid degradation
Chain: B: PDB Molecule:phosphoinositide-specific phospholipase c,
PDBTitle: phosphoinositide-specific phospholipase c-delta1 from rat2 complexed with inositol-2,4,5-trisphosphate
77c2kgrA_



not modelled 6.7 13 PDB header:protein binding
Chain: A: PDB Molecule:intersectin-1;
PDBTitle: solution structure of protein itsn1 from homo sapiens.2 northeast structural genomics consortium target hr5524a
78c1jc2A_



not modelled 6.7 14 PDB header:structural protein
Chain: A: PDB Molecule:troponin c, skeletal muscle;
PDBTitle: complex of the c-domain of troponin c with residues 1-40 of2 troponin i
79d1jc2a_



not modelled 6.7 14 Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
80c2amiA_



not modelled 6.6 19 PDB header:cell cycle
Chain: A: PDB Molecule:caltractin;
PDBTitle: solution structure of the calcium-loaded n-terminal sensor2 domain of centrin
81c1wsuA_



not modelled 6.6 11 PDB header:translation/rna
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: c-terminal domain of elongation factor selb complexed with2 secis rna
82c3aqpB_



not modelled 6.5 13 PDB header:membrane protein
Chain: B: PDB Molecule:probable secdf protein-export membrane protein;
PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus
83d1whya_



not modelled 6.5 16 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
84d1wdcc_



not modelled 6.4 19 Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
85d1whza_



not modelled 6.4 21 Fold:dsRBD-like
Superfamily:YcfA/nrd intein domain
Family:YcfA-like
86d1stza1



not modelled 6.3 11 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Heat-inducible transcription repressor HrcA, N-terminal domain
87c2voyB_



not modelled 6.3 18 PDB header:hydrolase
Chain: B: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium
PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus
88c2k7bA_



not modelled 6.2 9 PDB header:metal binding protein
Chain: A: PDB Molecule:calcium-binding protein 1;
PDBTitle: nmr structure of mg2+-bound cabp1 n-domain
89c2xnqA_



not modelled 6.1 13 PDB header:rna binding protein
Chain: A: PDB Molecule:nuclear polyadenylated rna-binding protein 3;
PDBTitle: structural insights into cis element recognition of non-2 polyadenylated rnas by the nab3-rrm
90c2k29A_



not modelled 6.1 17 PDB header:transcription
Chain: A: PDB Molecule:antitoxin relb;
PDBTitle: structure of the dbd domain of e. coli antitoxin relb
91d1kf6c_



not modelled 6.1 11 Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
92c2ytcA_



not modelled 6.0 17 PDB header:transcription
Chain: A: PDB Molecule:pre-mrna-splicing factor rbm22;
PDBTitle: solution structure of rna binding domain in pre-mrna-2 splicing factor rbm22
93d1whxa_



not modelled 6.0 16 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
94c2k1lB_



not modelled 6.0 24 PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3
95c2k1kB_



not modelled 6.0 24 PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3
96c2k1kA_



not modelled 6.0 24 PDB header:signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3
97c2k1lA_



not modelled 6.0 24 PDB header:signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3
98c3hkzY_



not modelled 6.0 10 PDB header:transferase
Chain: Y: PDB Molecule:dna-directed rna polymerase subunit 13;
PDBTitle: the x-ray crystal structure of rna polymerase from archaea
99c2ktgA_



not modelled 6.0 17 PDB header:ca-binding protein
Chain: A: PDB Molecule:calmodulin, putative;
PDBTitle: calmodulin like protein from entamoeba histolytica: solution structure2 and calcium binding properties of a partially folded protein

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0