Email l.a.kelley@imperial.ac.uk Description P0ABG1 Date Thu Jan 5 11:15:26 GMT 2012 Unique Job ID ac14ab8a421bee90

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3b9yA_ 93.7 15 PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein 2 d1u7ga_ 82.0 17 Fold:Ammonium transporter Superfamily:Ammonium transporter Family:Ammonium transporter 3 c3r2uC_ 53.6 22 PDB header:hydrolase Chain: C: PDB Molecule:metallo-beta-lactamase family protein; PDBTitle: 2.1 angstrom resolution crystal structure of metallo-beta-lactamase2 from staphylococcus aureus subsp. aureus col 4 d2p97a1 52.1 24 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Ava3068-like 5 c2xf4A_ 50.9 27 PDB header:hydrolase Chain: A: PDB Molecule:hydroxyacylglutathione hydrolase; PDBTitle: crystal structure of salmonella enterica serovar2 typhimurium ycbl 6 c2gcuD_ 47.1 21 PDB header:hydrolase Chain: D: PDB Molecule:putative hydroxyacylglutathione hydrolase 3; PDBTitle: x-ray structure of gene product from arabidopsis thaliana2 at1g53580 7 d1mqoa_ 45.7 19 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 8 c3tp9B_ 38.7 20 PDB header:hydrolase Chain: B: PDB Molecule:beta-lactamase and rhodanese domain protein; PDBTitle: crystal structure of alicyclobacillus acidocaldarius protein with2 beta-lactamase and rhodanese domains 9 c3hd6A_ 38.4 13 PDB header:membrane protein, transport protein Chain: A: PDB Molecule:ammonium transporter rh type c; PDBTitle: crystal structure of the human rhesus glycoprotein rhcg 10 d1nxca_ 36.2 19 Fold:alpha/alpha toroid Superfamily:Seven-hairpin glycosidases Family:Class I alpha-1;2-mannosidase, catalytic domain 11 d1xm8a_ 35.9 16 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Glyoxalase II (hydroxyacylglutathione hydrolase) 12 d1qh5a_ 34.9 7 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Glyoxalase II (hydroxyacylglutathione hydrolase) 13 d1znba_ 34.8 18 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 14 c2zwrA_ 34.2 35 PDB header:hydrolase Chain: A: PDB Molecule:metallo-beta-lactamase superfamily protein; PDBTitle: crystal structure of ttha1623 from thermus thermophilus hb8 15 d1dl2a_ 31.1 17 Fold:alpha/alpha toroid Superfamily:Seven-hairpin glycosidases Family:Class I alpha-1;2-mannosidase, catalytic domain 16 d2aioa1 30.2 21 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 17 d1bh9b_ 28.7 19 Fold:Histone-fold Superfamily:Histone-fold Family:TBP-associated factors, TAFs 18 c3hnnD_ 27.1 14 PDB header:oxidoreductase Chain: D: PDB Molecule:putative diflavin flavoprotein a 5; PDBTitle: crystal structure of putative diflavin flavoprotein a 5 (fragment 1-2 254) from nostoc sp. pcc 7120, northeast structural genomics3 consortium target nsr435a 19 d2qeda1 25.1 14 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Glyoxalase II (hydroxyacylglutathione hydrolase) 20 c3bboU_ 24.8 14 PDB header:ribosome Chain: U: PDB Molecule:ribosomal protein l22; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 21 c2zo4A_ not modelled 24.6 32 PDB header:hydrolase Chain: A: PDB Molecule:metallo-beta-lactamase family protein; PDBTitle: crystal structure of metallo-beta-lactamase family protein ttha14292 from thermus thermophilus hb8 22 c1ze2B_ not modelled 24.2 29 PDB header:lyase/rna Chain: B: PDB Molecule:trna pseudouridine synthase b; PDBTitle: conformational change of pseudouridine 55 synthase upon its2 association with rna substrate 23 d1m2xa_ not modelled 23.6 21 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 24 d1bk8a_ not modelled 21.8 57 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Plant defensins 25 d2gycq1 not modelled 21.7 36 Fold:Ribosomal protein L22 Superfamily:Ribosomal protein L22 Family:Ribosomal protein L22 26 c1s1iN_ not modelled 20.6 33 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein l17-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 27 d2ey4a2 not modelled 20.0 30 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 28 c3l6nA_ not modelled 19.6 21 PDB header:hydrolase Chain: A: PDB Molecule:metallo-beta-lactamase; PDBTitle: crystal structure of metallo-beta-lactamase ind-7 29 c1krfA_ not modelled 19.4 19 PDB header:hydrolase Chain: A: PDB Molecule:mannosyl-oligosaccharide alpha-1,2-mannosidase; PDBTitle: structure of p. citrinum alpha 1,2-mannosidase reveals the basis for2 differences in specificity of the er and golgi class i enzymes 30 d2ri9a1 not modelled 19.4 19 Fold:alpha/alpha toroid Superfamily:Seven-hairpin glycosidases Family:Class I alpha-1;2-mannosidase, catalytic domain 31 c1vmeB_ not modelled 18.9 17 PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution 32 d1r3ea2 not modelled 18.4 29 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 33 d1ycga2 not modelled 18.0 18 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:ROO N-terminal domain-like 34 d2gmna1 not modelled 17.8 21 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 35 c2yz3B_ not modelled 16.8 21 PDB header:hydrolase Chain: B: PDB Molecule:metallo-beta-lactamase; PDBTitle: crystallographic investigation of inhibition mode of the2 vim-2 metallo-beta-lactamase from pseudomonas aeruginosa3 with mercaptocarboxylate inhibitor 36 d1hcua_ not modelled 16.7 21 Fold:alpha/alpha toroid Superfamily:Seven-hairpin glycosidases Family:Class I alpha-1;2-mannosidase, catalytic domain 37 c2b2hA_ not modelled 16.0 10 PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter; PDBTitle: ammonium transporter amt-1 from a. fulgidus (as) 38 c3pisA_ not modelled 15.8 25 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:kazal-type serine protease inhibitor spi-1; PDBTitle: crystal structure of carcinoscorpius rotundicauda serine protease2 inhibitor domain 1 39 c2p18A_ not modelled 15.6 8 PDB header:hydrolase Chain: A: PDB Molecule:glyoxalase ii; PDBTitle: crystal structure of the leishmania infantum glyoxalase ii 40 d1sgva2 not modelled 15.5 26 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 41 d1k8wa5 not modelled 15.5 30 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 42 d2nn6h2 not modelled 15.4 33 Fold:Barrel-sandwich hybrid Superfamily:Ribosomal L27 protein-like Family:ECR1 N-terminal domain-like 43 c1g6iA_ not modelled 15.1 16 PDB header:hydrolase Chain: A: PDB Molecule:class i alpha-1,2-mannosidase; PDBTitle: crystal structure of the yeast alpha-1,2-mannosidase with bound 1-2 deoxymannojirimycin at 1.59 a resolution 44 c1k8wA_ not modelled 15.0 30 PDB header:lyase/rna Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: crystal structure of the e. coli pseudouridine synthase2 trub bound to a t stem-loop rna 45 d1ko3a_ not modelled 15.0 23 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 46 c1x9dA_ not modelled 14.8 14 PDB header:hydrolase Chain: A: PDB Molecule:endoplasmic reticulum mannosyl-oligosaccharide 1, PDBTitle: crystal structure of human class i alpha-1,2-mannosidase in2 complex with thio-disaccharide substrate analogue 47 d1x9da1 not modelled 14.8 14 Fold:alpha/alpha toroid Superfamily:Seven-hairpin glycosidases Family:Class I alpha-1;2-mannosidase, catalytic domain 48 d1jv1a_ not modelled 14.7 25 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 49 d2foka4 not modelled 14.6 20 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease FokI, C-terminal (catalytic) domain 50 d1pcfa_ not modelled 14.5 42 Fold:ssDNA-binding transcriptional regulator domain Superfamily:ssDNA-binding transcriptional regulator domain Family:Transcriptional coactivator PC4 C-terminal domain 51 d2icya2 not modelled 14.3 40 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 52 d1ayja_ not modelled 14.1 57 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Plant defensins 53 c3uaiA_ not modelled 13.9 33 PDB header:isomerase/chaperone Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 4; PDBTitle: structure of the shq1-cbf5-nop10-gar1 complex from saccharomyces2 cerevisiae 54 c2fhxB_ not modelled 13.8 28 PDB header:hydrolase, metal binding protein Chain: B: PDB Molecule:spm-1; PDBTitle: pseudomonas aeruginosa spm-1 metallo-beta-lactamase 55 d1f0la3 not modelled 13.4 67 Fold:Toxins' membrane translocation domains Superfamily:Diphtheria toxin, middle domain Family:Diphtheria toxin, middle domain 56 c2q9uB_ not modelled 13.3 10 PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis 57 c3oc9A_ not modelled 13.3 33 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of putative udp-n-acetylglucosamine2 pyrophosphorylase from entamoeba histolytica 58 d1gu2a_ not modelled 13.1 46 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 59 d1b0aa2 not modelled 12.9 30 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Tetrahydrofolate dehydrogenase/cyclohydrolase 60 d2apoa2 not modelled 12.5 38 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 61 c3pesA_ not modelled 12.4 67 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein gp49; PDBTitle: crystal structure of uncharacterized protein from pseudomonas phage2 yua 62 c3jywN_ not modelled 11.7 33 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein l17(a); PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 63 d1vm8a_ not modelled 11.4 25 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 64 c2e55D_ not modelled 11.1 43 PDB header:transferase Chain: D: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: structure of aq2163 protein from aquifex aeolicus 65 c3lvzA_ not modelled 11.0 17 PDB header:hydrolase Chain: A: PDB Molecule:blr6230 protein; PDBTitle: new refinement of the crystal structure of bjp-1, a subclass b32 metallo-beta-lactamase of bradyrhizobium japonicum 66 c2oefA_ not modelled 11.0 42 PDB header:transferase Chain: A: PDB Molecule:utp-glucose-1-phosphate uridylyltransferase 2, PDBTitle: open and closed structures of the udp-glucose2 pyrophosphorylase from leishmania major 67 c3h0dB_ not modelled 10.8 15 PDB header:transcription/dna Chain: B: PDB Molecule:ctsr; PDBTitle: crystal structure of ctsr in complex with a 26bp dna duplex 68 d1e5da2 not modelled 10.7 18 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:ROO N-terminal domain-like 69 c1sgvA_ not modelled 10.6 29 PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: structure of trna psi55 pseudouridine synthase (trub) 70 c2ey4A_ not modelled 10.4 33 PDB header:isomerase/biosynthetic protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of a cbf5-nop10-gar1 complex 71 c4a17Q_ not modelled 10.3 22 PDB header:ribosome Chain: Q: PDB Molecule:rpl17; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2. 72 d1jjta_ not modelled 10.2 14 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 73 c3gueB_ not modelled 9.9 42 PDB header:transferase Chain: B: PDB Molecule:utp-glucose-1-phosphate uridylyltransferase 2; PDBTitle: crystal structure of udp-glucose phosphorylase from trypanosoma2 brucei, (tb10.389.0330) 74 d1vqor1 not modelled 9.8 11 Fold:Ribosomal protein L22 Superfamily:Ribosomal protein L22 Family:Ribosomal protein L22 75 c3fvyA_ not modelled 9.6 36 PDB header:hydrolase Chain: A: PDB Molecule:dipeptidyl-peptidase 3; PDBTitle: crystal structure of human dipeptidyl peptidase iii 76 c2q4jB_ not modelled 9.3 33 PDB header:transferase Chain: B: PDB Molecule:probable utp-glucose-1-phosphate uridylyltransferase 2; PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at3g03250, a putative udp-glucose3 pyrophosphorylase 77 d1ecia_ not modelled 9.3 50 Fold:Ectatomin subunits Superfamily:Ectatomin subunits Family:Ectatomin subunits 78 c3sd9B_ not modelled 9.3 19 PDB header:hydrolase Chain: B: PDB Molecule:beta-lactamase; PDBTitle: crystal structure of serratia fonticola sfh-i: source of the2 nucleophile in the catalytic mechanism of mono-zinc metallo-beta-3 lactamases 79 c2yqsA_ not modelled 9.1 25 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of uridine-diphospho-n-acetylglucosamine2 pyrophosphorylase from candida albicans, in the product-binding form 80 c3dmpD_ not modelled 9.1 29 PDB header:transferase Chain: D: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: 2.6 a crystal structure of uracil phosphoribosyltransferase2 from burkholderia pseudomallei 81 c3spuB_ not modelled 9.0 14 PDB header:hydrolase Chain: B: PDB Molecule:beta-lactamase ndm-1; PDBTitle: apo ndm-1 crystal structure 82 d1i5ea_ not modelled 8.9 33 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 83 c2i5kB_ not modelled 8.9 33 PDB header:transferase Chain: B: PDB Molecule:utp--glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of ugp1p 84 c1ychD_ not modelled 8.7 16 PDB header:oxidoreductase Chain: D: PDB Molecule:nitric oxide reductase; PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase 85 d1i4ja_ not modelled 8.6 33 Fold:Ribosomal protein L22 Superfamily:Ribosomal protein L22 Family:Ribosomal protein L22 86 c2ftcM_ not modelled 8.5 29 PDB header:ribosome Chain: M: PDB Molecule:mitochondrial ribosomal protein l22 isoform a; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 87 c2apoA_ not modelled 8.4 38 PDB header:isomerase/rna binding protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of the methanococcus jannaschii cbf52 nop10 complex 88 c3cskA_ not modelled 8.4 29 PDB header:hydrolase Chain: A: PDB Molecule:probable dipeptidyl-peptidase 3; PDBTitle: structure of dpp iii from saccharomyces cerevisiae 89 d1a4ia2 not modelled 8.4 30 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Tetrahydrofolate dehydrogenase/cyclohydrolase 90 c3mv2A_ not modelled 8.3 14 PDB header:protein transport Chain: A: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of a-cop in complex with e-cop 91 c2fs1A_ not modelled 8.3 33 PDB header:protein binding Chain: A: PDB Molecule:psd-1; PDBTitle: solution structure of psd-1 92 d1gjsa_ not modelled 8.3 33 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:GA module, an albumin-binding domain 93 c2zvrA_ not modelled 8.1 36 PDB header:isomerase Chain: A: PDB Molecule:uncharacterized protein tm_0416; PDBTitle: crystal structure of a d-tagatose 3-epimerase-related2 protein from thermotoga maritima 94 d2q0ia1 not modelled 8.0 35 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:PqsE-like 95 c2zkrr_ not modelled 8.0 22 PDB header:ribosomal protein/rna Chain: R: PDB Molecule:rna expansion segment es39 part i; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 96 c1e5dA_ not modelled 7.9 21 PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas 97 d1edza2 not modelled 7.9 30 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Tetrahydrofolate dehydrogenase/cyclohydrolase 98 c3adrA_ not modelled 7.7 21 PDB header:signaling protein Chain: A: PDB Molecule:putative uncharacterized protein st1585; PDBTitle: the first crystal structure of an archaeal metallo-beta-lactamase2 superfamily protein; st1585 from sulfolobus tokodaii 99 c3iz5V_ not modelled 7.7 22 PDB header:ribosome Chain: V: PDB Molecule:60s ribosomal protein l17 (l22p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome