Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	L	R	K	I	L	A	L	T	C	L	L	L	P	M	M	A	S	A	H	Q	F	E	T	G	Q	R	V	P	P	I	G	I	T	D	R	G	E	L	V	L	D	K	D	Q	F	S	Y	K	T	W	N	S	A	Q	L	V	G	K
Secondary structure
SS confidence
Disorder		?	?																	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?				?															?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	R	V	L	Q	H	I	A	G	R	T	S	A	K	E	K	N	A	T	L	I	E	A	I	K	S	A	K	L	P	H	D	R	Y	Q	T	T	T	I	V	N	T	D	D	A	I	P	G	S	G	M	F	V	R	S	S	L	E	S	N
Secondary structure
SS confidence
Disorder												?	?	?			?											?				?													?	?	?	?	?	?										?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		K	K	L	Y	P	W	S	Q	F	I	V	D	S	N	G	V	A	L	G	A	W	Q	L	D	E	E	S	S	A	V	V	V	L	D	K	D	G	R	V	Q	W	A	K	D	G	A	L	T	P	E	E	V	Q	Q	V	M	D	L	L	Q
Secondary structure
SS confidence
Disorder		?	?												?				?	?	?		?	?																								?
Disorder confidence
		.	.	.	.
Sequence		K	L	L	K
Secondary structure
SS confidence
Disorder				?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1st9 chain A Region: 26 - 180 Aligned: 135 Modelled: 151 Confidence: 98.6% Identity: 18% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione peroxidase-like Phyre2 PDB 3kh7 chain A Region: 23 - 183 Aligned: 140 Modelled: 144 Confidence: 98.4% Identity: 15% PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbe; PDBTitle: crystal structure of the periplasmic soluble domain of reduced ccmg2 from pseudomonas aeruginosa Phyre2 PDB 2hyx chain A Region: 20 - 184 Aligned: 152 Modelled: 165 Confidence: 98.3% Identity: 16% PDB header:unknown function Chain: A: PDB Molecule:protein dipz; PDBTitle: structure of the c-terminal domain of dipz from mycobacterium2 tuberculosis Phyre2 PDB 3hdc chain A Region: 23 - 182 Aligned: 136 Modelled: 155 Confidence: 98.3% Identity: 14% PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin family protein; PDBTitle: the crystal structure of thioredoxin protein from geobacter2 metallireducens Phyre2 PDB 3lor chain B Region: 26 - 179 Aligned: 142 Modelled: 154 Confidence: 98.3% Identity: 11% PDB header:isomerase Chain: B: PDB Molecule:thiol-disulfide isomerase and thioredoxins; PDBTitle: the crystal structure of a thiol-disulfide isomerase from2 corynebacterium glutamicum to 2.2a Phyre2 PDB 2cvb chain A domain 1 Region: 23 - 179 Aligned: 143 Modelled: 157 Confidence: 98.2% Identity: 7% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione peroxidase-like Phyre2 PDB 1kng chain A Region: 27 - 183 Aligned: 140 Modelled: 157 Confidence: 98.2% Identity: 21% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione peroxidase-like Phyre2 PDB 3gl3 chain D Region: 26 - 183 Aligned: 136 Modelled: 155 Confidence: 98.2% Identity: 15% PDB header:oxidoreductase Chain: D: PDB Molecule:putative thiol:disulfide interchange protein PDBTitle: crystal structure of a putative thiol:disulfide interchange2 protein dsbe from chlorobium tepidum Phyre2 PDB 3kcm chain C Region: 26 - 183 Aligned: 138 Modelled: 152 Confidence: 98.2% Identity: 13% PDB header:oxidoreductase Chain: C: PDB Molecule:thioredoxin family protein; PDBTitle: the crystal structure of thioredoxin protein from geobacter2 metallireducens Phyre2 PDB 3drn chain B Region: 23 - 184 Aligned: 144 Modelled: 154 Confidence: 98.1% Identity: 13% PDB header:oxidoreductase Chain: B: PDB Molecule:peroxiredoxin, bacterioferritin comigratory protein PDBTitle: the crystal structure of bcp1 from sulfolobus sulfataricus Phyre2 PDB 3hcz chain A Region: 23 - 181 Aligned: 142 Modelled: 150 Confidence: 98.1% Identity: 12% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:possible thiol-disulfide isomerase; PDBTitle: the crystal structure of a domain of possible thiol-disulfide2 isomerase from cytophaga hutchinsonii atcc 33406. Phyre2 PDB 2b5x chain A domain 1 Region: 23 - 177 Aligned: 141 Modelled: 150 Confidence: 98.0% Identity: 12% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione peroxidase-like Phyre2 PDB 3ha9 chain A Region: 18 - 177 Aligned: 144 Modelled: 160 Confidence: 98.0% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized thioredoxin-like protein; PDBTitle: the 1.7a crystal structure of a thioredoxin-like protein from2 aeropyrum pernix Phyre2 PDB 2l5o chain A Region: 26 - 184 Aligned: 140 Modelled: 159 Confidence: 98.0% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin; PDBTitle: solution structure of a putative thioredoxin from neisseria2 meningitidis Phyre2 PDB 3lwa chain A Region: 26 - 179 Aligned: 141 Modelled: 154 Confidence: 98.0% Identity: 15% PDB header:isomerase Chain: A: PDB Molecule:secreted thiol-disulfide isomerase; PDBTitle: the crystal structure of a secreted thiol-disulfide2 isomerase from corynebacterium glutamicum to 1.75a Phyre2 PDB 1e2y chain A Region: 23 - 182 Aligned: 152 Modelled: 155 Confidence: 98.0% Identity: 12% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione peroxidase-like Phyre2 PDB 2b1k chain A Region: 22 - 184 Aligned: 143 Modelled: 163 Confidence: 98.0% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbe; PDBTitle: crystal structure of e. coli ccmg protein Phyre2 PDB 3fkf chain C Region: 24 - 176 Aligned: 139 Modelled: 145 Confidence: 98.0% Identity: 7% PDB header:oxidoreductase Chain: C: PDB Molecule:thiol-disulfide oxidoreductase; PDBTitle: thiol-disulfide oxidoreductase from bacteroides fragilis nctc 9343 Phyre2 PDB 2fy6 chain A domain 1 Region: 42 - 177 Aligned: 127 Modelled: 136 Confidence: 97.9% Identity: 10% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione peroxidase-like Phyre2 PDB 1jfu chain A Region: 17 - 177 Aligned: 144 Modelled: 155 Confidence: 97.9% Identity: 13% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione peroxidase-like Phyre2 1 d1st9a_ 2 c3kh7A_ 3 c2hyxA_ 4 c3hdcA_ 5 c3lorB_ 6 d2cvba1 7 d1knga_ 8 c3gl3D_ 9 c3kcmC_ 10 c3drnB_ 11 c3hczA_ 12 d2b5xa1 13 c3ha9A_ 14 c2l5oA_ 15 c3lwaA_ 16 d1e2ya_ 17 c2b1kA_ 18 c3fkfC_ 19 d2fy6a1 20 d1jfua_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1st9a_ 98.6 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 2 c3kh7A_ 98.4 15 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbe; PDBTitle: crystal structure of the periplasmic soluble domain of reduced ccmg2 from pseudomonas aeruginosa 3 c2hyxA_ 98.3 16 PDB header:unknown function Chain: A: PDB Molecule:protein dipz; PDBTitle: structure of the c-terminal domain of dipz from mycobacterium2 tuberculosis 4 c3hdcA_ 98.3 14 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin family protein; PDBTitle: the crystal structure of thioredoxin protein from geobacter2 metallireducens 5 c3lorB_ 98.3 11 PDB header:isomerase Chain: B: PDB Molecule:thiol-disulfide isomerase and thioredoxins; PDBTitle: the crystal structure of a thiol-disulfide isomerase from2 corynebacterium glutamicum to 2.2a 6 d2cvba1 98.2 7 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 7 d1knga_ 98.2 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 8 c3gl3D_ 98.2 15 PDB header:oxidoreductase Chain: D: PDB Molecule:putative thiol:disulfide interchange protein PDBTitle: crystal structure of a putative thiol:disulfide interchange2 protein dsbe from chlorobium tepidum 9 c3kcmC_ 98.2 13 PDB header:oxidoreductase Chain: C: PDB Molecule:thioredoxin family protein; PDBTitle: the crystal structure of thioredoxin protein from geobacter2 metallireducens 10 c3drnB_ 98.1 13 PDB header:oxidoreductase Chain: B: PDB Molecule:peroxiredoxin, bacterioferritin comigratory protein PDBTitle: the crystal structure of bcp1 from sulfolobus sulfataricus 11 c3hczA_ 98.1 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:possible thiol-disulfide isomerase; PDBTitle: the crystal structure of a domain of possible thiol-disulfide2 isomerase from cytophaga hutchinsonii atcc 33406. 12 d2b5xa1 98.0 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 13 c3ha9A_ 98.0 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized thioredoxin-like protein; PDBTitle: the 1.7a crystal structure of a thioredoxin-like protein from2 aeropyrum pernix 14 c2l5oA_ 98.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin; PDBTitle: solution structure of a putative thioredoxin from neisseria2 meningitidis 15 c3lwaA_ 98.0 15 PDB header:isomerase Chain: A: PDB Molecule:secreted thiol-disulfide isomerase; PDBTitle: the crystal structure of a secreted thiol-disulfide2 isomerase from corynebacterium glutamicum to 1.75a 16 d1e2ya_ 98.0 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 17 c2b1kA_ 98.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbe; PDBTitle: crystal structure of e. coli ccmg protein 18 c3fkfC_ 98.0 7 PDB header:oxidoreductase Chain: C: PDB Molecule:thiol-disulfide oxidoreductase; PDBTitle: thiol-disulfide oxidoreductase from bacteroides fragilis nctc 9343 19 d2fy6a1 97.9 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 20 d1jfua_ 97.9 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 21 d2bmxa1 not modelled 97.9 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 22 d1zofa1 not modelled 97.9 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 23 c3or5A_ not modelled 97.9 13 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein, thioredoxin family PDBTitle: crystal structure of thiol:disulfide interchange protein, thioredoxin2 family protein from chlorobium tepidum tls 24 d1qq2a_ not modelled 97.9 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 25 c3kebB_ not modelled 97.9 14 PDB header:oxidoreductase Chain: B: PDB Molecule:probable thiol peroxidase; PDBTitle: thiol peroxidase from chromobacterium violaceum 26 c1zofB_ not modelled 97.9 12 PDB header:oxidoreductase Chain: B: PDB Molecule:alkyl hydroperoxide-reductase; PDBTitle: crystal structure of alkyl hydroperoxide-reductase (ahpc)2 from helicobacter pylori 27 c2yzhD_ not modelled 97.9 14 PDB header:oxidoreductase Chain: D: PDB Molecule:probable thiol peroxidase; PDBTitle: crystal structure of peroxiredoxin-like protein from aquifex aeolicus 28 c2jszA_ not modelled 97.8 15 PDB header:oxidoreductase Chain: A: PDB Molecule:probable thiol peroxidase; PDBTitle: solution structure of tpx in the reduced state 29 d2cx4a1 not modelled 97.8 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 30 c2c0dA_ not modelled 97.8 11 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin peroxidase 2; PDBTitle: structure of the mitochondrial 2-cys peroxiredoxin from2 plasmodium falciparum 31 d1xvwa1 not modelled 97.8 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 32 c3razA_ not modelled 97.7 13 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin-related protein; PDBTitle: the crystal structure of thioredoxin-related protein from neisseria2 meningitidis serogroup b 33 c2h66G_ not modelled 97.7 15 PDB header:structural genomics/oxidoreductase Chain: G: PDB Molecule:pv-pf14_0368; PDBTitle: the crystal structure of plasmodium vivax 2-cys2 peroxiredoxin 34 c2ywiA_ not modelled 97.7 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical conserved protein; PDBTitle: crystal structure of uncharacterized conserved protein from2 geobacillus kaustophilus 35 c3erwG_ not modelled 97.7 16 PDB header:oxidoreductase Chain: G: PDB Molecule:sporulation thiol-disulfide oxidoreductase a; PDBTitle: crystal structure of stoa from bacillus subtilis 36 c3gknA_ not modelled 97.7 12 PDB header:oxidoreductase Chain: A: PDB Molecule:bacterioferritin comigratory protein; PDBTitle: insights into the alkyl peroxide reduction activity of xanthomonas2 campestris bacterioferritin comigratory protein from the trapped3 intermediate/ligand complex structures 37 c3eytA_ not modelled 97.7 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein spoa0173; PDBTitle: crystal structure of thioredoxin-like superfamily protein spoa0173 38 c2bmxB_ not modelled 97.7 14 PDB header:oxidoreductase Chain: B: PDB Molecule:alkyl hydroperoxidase c; PDBTitle: mycobacterium tuberculosis ahpc 39 d1qmva_ not modelled 97.7 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 40 d1lu4a_ not modelled 97.7 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 41 c3ia1A_ not modelled 97.6 13 PDB header:oxidoreductase Chain: A: PDB Molecule:thio-disulfide isomerase/thioredoxin; PDBTitle: crystal structure of thio-disulfide isomerase from thermus2 thermophilus 42 c3cmiA_ not modelled 97.6 16 PDB header:oxidoreductase Chain: A: PDB Molecule:peroxiredoxin hyr1; PDBTitle: crystal structure of glutathione-dependent phospholipid peroxidase2 hyr1 from the yeast saccharomyces cerevisiae 43 d1zzoa1 not modelled 97.6 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 44 d1psqa_ not modelled 97.6 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 45 c3ixrA_ not modelled 97.5 15 PDB header:oxidoreductase Chain: A: PDB Molecule:bacterioferritin comigratory protein; PDBTitle: crystal structure of xylella fastidiosa prxq c47s mutant 46 d1z5ye1 not modelled 97.5 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 47 c2p31B_ not modelled 97.5 13 PDB header:oxidoreductase Chain: B: PDB Molecule:glutathione peroxidase 7; PDBTitle: crystal structure of human glutathione peroxidase 7 48 c3me8B_ not modelled 97.4 17 PDB header:electron transport Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of putative electron transfer protein aq_2194 from2 aquifex aeolicus vf5 49 c3ewlA_ not modelled 97.4 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein bf1870; PDBTitle: crystal structure of conserved protein bf1870 of unknown function from2 bacteroides fragilis 50 c1zyeL_ not modelled 97.3 14 PDB header:oxidoreductase Chain: L: PDB Molecule:thioredoxin-dependent peroxide reductase; PDBTitle: crystal strucutre analysis of bovine mitochondrial peroxiredoxin iii 51 c2p5qA_ not modelled 97.3 15 PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione peroxidase 5; PDBTitle: crystal structure of the poplar glutathione peroxidase 5 in2 the reduced form 52 c3fw2A_ not modelled 97.2 13 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol-disulfide oxidoreductase; PDBTitle: c-terminal domain of putative thiol-disulfide oxidoreductase from2 bacteroides thetaiotaomicron. 53 c3cynC_ not modelled 97.2 9 PDB header:oxidoreductase Chain: C: PDB Molecule:probable glutathione peroxidase 8; PDBTitle: the structure of human gpx8 54 d1uula_ not modelled 97.2 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 55 d2zcta1 not modelled 97.1 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 56 d1we0a1 not modelled 97.1 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 57 c2ywnA_ not modelled 97.1 21 PDB header:oxidoreductase Chain: A: PDB Molecule:peroxiredoxin-like protein; PDBTitle: crystal structure of peroxiredoxin-like protein from2 sulfolobus tokodaii 58 d1zyea1 not modelled 97.0 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 59 d1qxha_ not modelled 97.0 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 60 c3eurA_ not modelled 97.0 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the c-terminal domain of uncharacterized protein2 from bacteroides fragilis nctc 9343 61 d2b7ka1 not modelled 96.9 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 62 d1xzoa1 not modelled 96.9 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 63 d1n8ja_ not modelled 96.8 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 64 c2v1mA_ not modelled 96.8 14 PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione peroxidase; PDBTitle: crystal structure of schistosoma mansoni glutathione2 peroxidase 65 c2xpdC_ not modelled 96.8 15 PDB header:oxidoreductase Chain: C: PDB Molecule:thiol peroxidase; PDBTitle: reduced thiol peroxidase (tpx) from yersinia pseudotuberculosis 66 d1gp1a_ not modelled 96.7 9 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 67 c2he3A_ not modelled 96.7 10 PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione peroxidase 2; PDBTitle: crystal structure of the selenocysteine to cysteine mutant of human2 glutathionine peroxidase 2 (gpx2) 68 d1yexa1 not modelled 96.6 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 69 d2h01a1 not modelled 96.5 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 70 d1prxa_ not modelled 96.4 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 71 c3dwvB_ not modelled 96.4 12 PDB header:oxidoreductase Chain: B: PDB Molecule:glutathione peroxidase-like protein; PDBTitle: glutathione peroxidase-type tryparedoxin peroxidase,2 oxidized form 72 c2obiA_ not modelled 96.3 11 PDB header:oxidoreductase Chain: A: PDB Molecule:phospholipid hydroperoxide glutathione PDBTitle: crystal structure of the selenocysteine to cysteine mutant2 of human phospholipid hydroperoxide glutathione peroxidase3 (gpx4) 73 c2xhfA_ not modelled 96.3 12 PDB header:oxidoreductase Chain: A: PDB Molecule:peroxiredoxin 5; PDBTitle: crystal structure of peroxiredoxin 5 from alvinella pompejana 74 d1q98a_ not modelled 96.1 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 75 d2f8aa1 not modelled 96.1 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 76 d1wp0a1 not modelled 96.0 7 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 77 d1hd2a_ not modelled 95.9 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 78 d2a4va1 not modelled 95.7 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 79 d1xcca_ not modelled 95.4 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 80 c2r37A_ not modelled 95.0 13 PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione peroxidase 3; PDBTitle: crystal structure of human glutathione peroxidase 3 (selenocysteine to2 glycine mutant) 81 c2v2gC_ not modelled 94.9 12 PDB header:oxidoreductase Chain: C: PDB Molecule:peroxiredoxin 6; PDBTitle: crystal structure of the c45s mutant of the peroxiredoxin 62 of arenicola marina. monoclinic form 82 c2rliA_ not modelled 94.8 13 PDB header:metal transport Chain: A: PDB Molecule:sco2 protein homolog, mitochondrial; PDBTitle: solution structure of cu(i) human sco2 83 d2cv4a1 not modelled 94.8 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 84 d1o8xa_ not modelled 94.5 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 85 d1xvqa_ not modelled 94.4 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 86 d1z6na1 not modelled 94.1 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 87 c2wfcD_ not modelled 93.4 17 PDB header:oxidoreductase Chain: D: PDB Molecule:peroxiredoxin 5; PDBTitle: crystal structure of peroxiredoxin 5 from arenicola marina 88 c2b7kD_ not modelled 92.8 10 PDB header:metal binding protein Chain: D: PDB Molecule:sco1 protein; PDBTitle: crystal structure of yeast sco1 89 d1o73a_ not modelled 91.7 8 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 90 c2k6vA_ not modelled 91.4 15 PDB header:electron transport Chain: A: PDB Molecule:putative cytochrome c oxidase assembly protein; PDBTitle: solution structures of apo sco1 protein from thermus2 thermophilus 91 c2l57A_ not modelled 90.7 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of an uncharacterized thioredoin-like protein from2 clostridium perfringens 92 c3umaC_ not modelled 88.7 19 PDB header:oxidoreductase Chain: C: PDB Molecule:hypothetical peroxiredoxin protein; PDBTitle: crystal structure of a hypothetical peroxiredoxin protein frm2 sinorhizobium meliloti 93 c2pwjB_ not modelled 86.2 15 PDB header:oxidoreductase Chain: B: PDB Molecule:mitochondrial peroxiredoxin; PDBTitle: structure of a mitochondrial type ii peroxiredoxin from2 pisum sativum 94 d1tp9a1 not modelled 86.1 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 95 c2kucA_ not modelled 76.7 18 PDB header:isomerase Chain: A: PDB Molecule:putative disulphide-isomerase; PDBTitle: solution structure of a putative disulphide-isomerase from bacteroides2 thetaiotaomicron 96 d1i5ga_ not modelled 76.0 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 97 d1y6ja2 not modelled 72.9 17 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 98 c2v6bB_ not modelled 72.8 19 PDB header:oxidoreductase Chain: B: PDB Molecule:l-lactate dehydrogenase; PDBTitle: crystal structure of lactate dehydrogenase from deinococcus2 radiodurans (apo form) 99 d1xiya1 not modelled 68.7 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 100 d1t2da2 not modelled 67.3 13 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 101 d1oc4a2 not modelled 64.0 9 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 102 c3gnjD_ not modelled 57.6 14 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:thioredoxin domain protein; PDBTitle: the crystal structure of a thioredoxin-related protein from2 desulfitobacterium hafniense dcb 103 c2ju5A_ not modelled 57.3 18 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin disulfide isomerase; PDBTitle: dsbh oxidoreductase 104 c3hz4A_ not modelled 53.9 9 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure of thioredoxin from methanosarcina mazei 105 c3f9uA_ not modelled 50.2 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported cytochrome c biogenesis-related protein; PDBTitle: crystal structure of c-terminal domain of putative exported cytochrome2 c biogenesis-related protein from bacteroides fragilis 106 d1zmaa1 not modelled 48.7 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 107 d1pzga2 not modelled 46.6 13 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 108 c2wshC_ not modelled 46.1 9 PDB header:hydrolase Chain: C: PDB Molecule:endonuclease ii; PDBTitle: structure of bacteriophage t4 endoii e118a mutant 109 c3gr0D_ not modelled 46.0 21 PDB header:membrane protein Chain: D: PDB Molecule:protein prgh; PDBTitle: periplasmic domain of the t3ss inner membrane protein prgh from2 s.typhimurium (fragment 170-362) 110 c3fk8A_ not modelled 44.7 27 PDB header:isomerase Chain: A: PDB Molecule:disulphide isomerase; PDBTitle: the crystal structure of disulphide isomerase from xylella fastidiosa2 temecula1 111 d2d30a1 not modelled 41.9 27 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase 112 c2l6dA_ not modelled 40.7 21 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: solution structure of desulfothioredoxin from desulfovibrio vulgaris2 hildenborough in its reduced form 113 d2fwha1 not modelled 40.6 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 114 d1nw2a_ not modelled 39.9 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 115 c2e0qA_ not modelled 39.2 30 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure of k53e thioredoxin from sulfolobus2 tokodaii strain7 116 c2pptA_ not modelled 37.0 12 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin-2; PDBTitle: crystal structure of thioredoxin-2 117 d2ooka1 not modelled 35.7 19 Fold:SpoIIaa-like Superfamily:SpoIIaa-like Family:Sfri0576-like 118 d5mdha2 not modelled 35.0 9 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 119 c3ul3A_ not modelled 34.1 14 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: structural insights into thioredoxin-2: a component of malaria2 parasite protein secretion machinery 120 d1nm3a2 not modelled 33.9 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0