BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (184 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P39187 Uncharacterized protein ytfJ n=198 Tax=Gammaprot...   379   e-104
UniRef50_C6CAS8 Putative uncharacterized protein n=1 Tax=Dickeya...   184   1e-45
UniRef50_C3NV58 Protein YtfJ n=54 Tax=Gammaproteobacteria RepID=...   177   1e-43
UniRef50_Q5E822 Predicted transcriptional regulator n=21 Tax=Vib...   166   3e-40
UniRef50_C9PS15 Transcriptional regulator YtfJ n=2 Tax=Gammaprot...   164   1e-39
UniRef50_P44478 Uncharacterized protein HI0045 n=25 Tax=Pasteure...   156   3e-37
UniRef50_A6FG85 Putative uncharacterized protein n=1 Tax=Moritel...   152   4e-36
UniRef50_A4P185 Putative uncharacterized protein n=2 Tax=Haemoph...   115   6e-25
UniRef50_A0YEF3 Putative uncharacterized protein n=1 Tax=marine ...   106   5e-22
UniRef50_B7RUM8 Putative uncharacterized protein n=1 Tax=marine ...    97   2e-19
UniRef50_A0Z1Q9 Predicted transcriptional regulator n=1 Tax=mari...    75   8e-13
UniRef50_A6Q2B2 Transcriptional regulator n=1 Tax=Nitratiruptor ...    69   9e-11
UniRef50_C8TCQ6 Transcriptional regulator YtfJ n=1 Tax=Klebsiell...    60   5e-08
UniRef50_A6QB01 Transcriptional regulator n=1 Tax=Sulfurovum sp....    57   2e-07
UniRef50_A9GVB8 Putative uncharacterized protein n=1 Tax=Sorangi...    44   0.003
UniRef50_P24508 Sucrose operon repressor n=1 Tax=Vibrio alginoly...    42   0.008

>UniRef50_P39187 Uncharacterized protein ytfJ n=198 Tax=Gammaproteobacteria
           RepID=YTFJ_ECOLI
          Length = 184

 Score =  379 bits (973), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/184 (100%), Positives = 184/184 (100%)

Query: 1   MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60
           MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK
Sbjct: 1   MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60

Query: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120
           VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN
Sbjct: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120

Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180
           KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ
Sbjct: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180

Query: 181 KLLK 184
           KLLK
Sbjct: 181 KLLK 184


>UniRef50_C6CAS8 Putative uncharacterized protein n=1 Tax=Dickeya dadantii Ech703
           RepID=C6CAS8_DICDC
          Length = 201

 Score =  184 bits (466), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/185 (49%), Positives = 128/185 (69%), Gaps = 2/185 (1%)

Query: 1   MTLRKILALTCLLL--PMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLV 58
           MT R  L    +LL  P    AH     + +P + ++D GEL     +  Y +W+SAQLV
Sbjct: 1   MTRRACLLTIWVLLIFPRWLPAHILPLYRMLPDVVVSDGGELQYQDGKPHYLSWSSAQLV 60

Query: 59  GKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLE 118
           GKVR++QHIAGR SA+  N TL+ A+K+A LP + YQTTTIVN D+A+ G+G FVR  +E
Sbjct: 61  GKVRLIQHIAGRMSARNMNETLMTALKAANLPREYYQTTTIVNADEAVIGTGFFVRKRIE 120

Query: 119 SNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDL 178
           + K  YPW+QF++D+ G    AWQL  +S+AV+VLDK+GR+++ KDG+L  +EVQQV++L
Sbjct: 121 AGKTQYPWTQFVLDNQGEVRKAWQLTPKSAAVIVLDKEGRIRYVKDGSLNRQEVQQVVNL 180

Query: 179 LQKLL 183
           LQ LL
Sbjct: 181 LQVLL 185


>UniRef50_C3NV58 Protein YtfJ n=54 Tax=Gammaproteobacteria RepID=C3NV58_VIBCJ
          Length = 183

 Score =  177 bits (450), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/183 (46%), Positives = 121/183 (66%)

Query: 1   MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60
           M  + ++AL     P +A AH    G  VP +G+   GE+VL  +  +Y+ W SA L+GK
Sbjct: 1   MKNKTLIALLLACSPTLAFAHNLTVGSPVPAVGVEKHGEIVLQDNNINYQKWRSADLLGK 60

Query: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120
           VRV+Q IAGR+S+KE NA L+ AI +AK P + YQTTTI+N DDAI G+  FV+SS + +
Sbjct: 61  VRVIQAIAGRSSSKEMNAPLMAAITAAKFPAESYQTTTIINQDDAIWGTSSFVKSSAQDS 120

Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180
           KK +PWS  ++D  G+   AWQL  ESSA++V DK G V + K+GAL   ++Q V+ L+Q
Sbjct: 121 KKEFPWSSMVLDEFGLVAQAWQLQAESSAIIVQDKQGNVLFVKEGALNEADIQTVLGLIQ 180

Query: 181 KLL 183
           + L
Sbjct: 181 QNL 183


>UniRef50_Q5E822 Predicted transcriptional regulator n=21 Tax=Vibrionales
           RepID=Q5E822_VIBF1
          Length = 183

 Score =  166 bits (421), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 80/179 (44%), Positives = 114/179 (63%)

Query: 5   KILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRVL 64
           K+L L   LLP ++ AH     + VP + I   GE+       +Y+ WN+ QL GKVRVL
Sbjct: 5   KLLTLAACLLPSLSFAHNLTLNKEVPSVSIEQYGEIFFKNSAATYQNWNTEQLKGKVRVL 64

Query: 65  QHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKLY 124
           Q IAGR+SAK  NA L+ AI   K P   YQTTTI+N DD+I G+G FV+SS E +K+ +
Sbjct: 65  QAIAGRSSAKAMNADLMSAITLEKFPETEYQTTTIINQDDSIWGTGGFVKSSAEESKEEF 124

Query: 125 PWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLL 183
            WS  ++D +G    AW L  ESSA++V DK+G++ + K+G L+ +E++QV+ L+   L
Sbjct: 125 SWSSMVLDEHGKVAKAWDLQPESSAIIVQDKEGKILFVKEGKLSNDEIKQVIALIHTQL 183


>UniRef50_C9PS15 Transcriptional regulator YtfJ n=2 Tax=Gammaproteobacteria
           RepID=C9PS15_9PAST
          Length = 191

 Score =  164 bits (416), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 78/179 (43%), Positives = 112/179 (62%)

Query: 6   ILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRVLQ 65
           +L L  +       AH  +    + P+ + + GEL +  D  SYK W+S QLVGKVR++ 
Sbjct: 13  VLGLAAVFCSTGLFAHNIQLNSPLAPVSVEEDGELSVKGDDVSYKAWSSVQLVGKVRIVN 72

Query: 66  HIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKLYP 125
           H AGR   K++N TLI AIK+A+    +YQTTTI+N DDA  G+G FV+S  E  KK  P
Sbjct: 73  HFAGRRDVKDRNETLINAIKAAQFDRSKYQTTTIINADDATFGTGSFVKSGAEKGKKKNP 132

Query: 126 WSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLLK 184
            SQ ++D  G    AWQL E+ + V+VLDK G+V++  +GAL+  +VQ+V+ L+ +L K
Sbjct: 133 HSQVVLDQRGAVKNAWQLKEKENLVIVLDKSGKVKFVHEGALSGAQVQEVISLITELTK 191


>UniRef50_P44478 Uncharacterized protein HI0045 n=25 Tax=Pasteurellaceae
           RepID=Y045_HAEIN
          Length = 184

 Score =  156 bits (394), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 118/182 (64%), Gaps = 1/182 (0%)

Query: 4   RKILALTC-LLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVR 62
           ++ILAL C ++      AH  +  Q +P + +++ GE+VL      ++ W SA+L GKVR
Sbjct: 3   KQILALVCGVIFSSSTWAHNLQLEQSLPSVKVSEYGEIVLSGKDTVFQPWGSAELAGKVR 62

Query: 63  VLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKK 122
           V+ H+AGRT+AKE N ++I+ IK++     +YQTTTI+N DDAI G+GMFV++  +  K+
Sbjct: 63  VVHHLAGRTAAKEXNQSMIDVIKASHFNPVKYQTTTIINADDAIVGTGMFVKNGAKKGKQ 122

Query: 123 LYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKL 182
             P SQ ++D       AW L+ + SA++VLDK G+V++ K+G L+  ++Q V+ L+  L
Sbjct: 123 ENPHSQVVLDDKSAVKNAWGLNSKDSAIIVLDKTGKVKFVKEGKLSDSDIQTVISLVNGL 182

Query: 183 LK 184
            K
Sbjct: 183 TK 184


>UniRef50_A6FG85 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36
           RepID=A6FG85_9GAMM
          Length = 182

 Score =  152 bits (385), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 72/179 (40%), Positives = 117/179 (65%), Gaps = 1/179 (0%)

Query: 3   LRKILALTCL-LLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61
           ++KIL +  L L   +A +H    G+ +P + ITD+G + L +  F Y+ W SA+L  KV
Sbjct: 1   MKKILTVIALSLTSFVALSHSLTVGENLPQVTITDKGYVDLVEGDFEYRQWTSAELQNKV 60

Query: 62  RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121
            ++QHIAGRTSAKE N  +I+A+ +A  P ++Y T T+VN D++I G+G  V S ++SNK
Sbjct: 61  ILIQHIAGRTSAKELNDPMIDAVIAADFPFEKYNTATLVNLDESIWGTGAIVASQVKSNK 120

Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180
           + +P + F++DS G     W L E+SSA+++LD+ G++ + KDG + P E+  V+ ++ 
Sbjct: 121 EEFPDAIFVLDSEGAMRKTWALTEKSSAIILLDQAGKILYVKDGEMNPTEIDTVIGIIN 179


>UniRef50_A4P185 Putative uncharacterized protein n=2 Tax=Haemophilus influenzae
           RepID=A4P185_HAEIN
          Length = 130

 Score =  115 bits (289), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 54/123 (43%), Positives = 86/123 (69%), Gaps = 2/123 (1%)

Query: 4   RKILALTC-LLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVR 62
           ++ILAL C ++      AH  +  Q +P + +T+ GE+VL     +++ W SA+L GKVR
Sbjct: 3   KQILALVCGVMFSSSTWAHNLQLEQSLPAVQVTEYGEIVLSGKDTAFQPWGSAELAGKVR 62

Query: 63  VLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSL-ESNK 121
           V+ H+AGRT+AKEKN ++I+ IK++     +YQTTTI+N DDAI G+GMFV++   ++N+
Sbjct: 63  VVHHLAGRTAAKEKNQSMIDVIKASHFNPVKYQTTTIINADDAIVGTGMFVKNGAKKANR 122

Query: 122 KLY 124
           K++
Sbjct: 123 KIH 125


>UniRef50_A0YEF3 Putative uncharacterized protein n=1 Tax=marine gamma
           proteobacterium HTCC2143 RepID=A0YEF3_9GAMM
          Length = 185

 Score =  106 bits (264), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 96/179 (53%), Gaps = 5/179 (2%)

Query: 6   ILALTCLLLPMMASAHQFETGQRV----PPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61
           I  L C +     S   F  G  V    P + I DRGEL+++K  FS++ W++    GKV
Sbjct: 3   IQQLVCGVFLAFISTLAFAQGPLVDSPLPALTIADRGELLMEKGDFSFRPWSTEHNPGKV 62

Query: 62  RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121
            ++Q+     S  E      + ++ + L   +Y  TTIVN D A+ G+  FV S L+SNK
Sbjct: 63  HIVQYFGATKSDSELFKPFTDLLQDS-LGVGKYHVTTIVNLDAAVWGTSSFVISELKSNK 121

Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180
           + YP S  ++D  G  +G W+L EE + + ++D++G V++     +T  E+   +DL++
Sbjct: 122 RKYPLSTIVLDQEGSGIGRWKLGEEGAGLAIIDQEGVVRYFTKTPMTDAEMDASLDLVK 180


>UniRef50_B7RUM8 Putative uncharacterized protein n=1 Tax=marine gamma
           proteobacterium HTCC2148 RepID=B7RUM8_9GAMM
          Length = 186

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 2   TLRKILALTCLLLPMMASAHQFET-GQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60
           T++ + +L  L L  +++A    T G+ +PP+ I+  GE++LD D   Y+ WNS   V K
Sbjct: 3   TVKTLTSLAGLFLLSLSTASFAATVGEPLPPLAISQPGEIMLDGDGIGYQPWNSQNTVDK 62

Query: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120
           V V+Q+I    SA +      + ++    P   +  TT+++ D A+ G+   V S +E N
Sbjct: 63  VHVVQYIPATMSASKMYRPFTDYLEENYDP-SHFHVTTVIDLDAALWGTSGLVSSEVEKN 121

Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWA 162
           K+ YP S  ++D  G  +G W L +  S + ++D+ G V +A
Sbjct: 122 KRKYPLSTLVLDKTGSGIGTWSLGKNGSGLFIVDETGIVHFA 163


>UniRef50_A0Z1Q9 Predicted transcriptional regulator n=1 Tax=marine gamma
           proteobacterium HTCC2080 RepID=A0Z1Q9_9GAMM
          Length = 181

 Score = 75.5 bits (184), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 92/180 (51%), Gaps = 5/180 (2%)

Query: 7   LALTCLLLPMMASAH---QFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRV 63
           + L    LP  A A+       G+ +PP+ IT+ G+++LD D +S   W+      KV+V
Sbjct: 1   MGLLLWSLPGYAEANATANLILGEPLPPVTITEGGQVILDGDGYSLAPWSWPGSSNKVQV 60

Query: 64  LQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKL 123
           LQ++AG     +    + E ++  +L  DRY  T +VN +        FVRS++   +++
Sbjct: 61  LQYVAGTRKGGDLYDPMTERMRR-ELDFDRYDITAVVNLEVTSAFVKPFVRSAVVDEQRI 119

Query: 124 YPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLL 183
           +  +  ++D  G+    W L ++ +A VV+D+ G V     GA +  + ++   +L+ L+
Sbjct: 120 FTRATLVLDERGIGQATWNLTQQ-AAFVVVDRKGLVVDVILGAPSEADFERSFQVLRDLI 178


>UniRef50_A6Q2B2 Transcriptional regulator n=1 Tax=Nitratiruptor sp. SB155-2
           RepID=A6Q2B2_NITSB
          Length = 173

 Score = 68.6 bits (166), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 94/185 (50%), Gaps = 20/185 (10%)

Query: 3   LRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQ---FSYKTWNSAQLVG 59
           ++K+  L+ +   +MA     E G        T    +VL+KD+        +++A + G
Sbjct: 1   MKKVFMLSIIACFLMA----LEIG--------TIPKRVVLEKDKGGTIDGSPFDTASMKG 48

Query: 60  KVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDA-IPGSGMFVRSSLE 118
           KV ++  I      ++ N    E +K+     +RY +  I+N     IP     + + L+
Sbjct: 49  KVYLV--IYSDPDKRDLNEPFFEKVKAKNFDRNRYTSIAIINMAATWIPN--FLLNAILK 104

Query: 119 SNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDL 178
           + +K YP++ ++ D+  V + AWQL +    V++ D++GRVQ+   G L+ +E ++ + +
Sbjct: 105 AKQKKYPYTVYVKDNKKVLVHAWQLPDNDQVVMIFDQNGRVQYIGHGKLSQKEQERALHI 164

Query: 179 LQKLL 183
           L++L+
Sbjct: 165 LEELI 169


>UniRef50_C8TCQ6 Transcriptional regulator YtfJ n=1 Tax=Klebsiella pneumoniae
          subsp. rhinoscleromatis ATCC 13884 RepID=C8TCQ6_KLEPR
          Length = 79

 Score = 59.7 bits (143), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 43/51 (84%)

Query: 1  MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKT 51
          MTLR ILA + LLLP++A+AH F  GQRV P+G+ DRGEL+LDKD+FSYKT
Sbjct: 1  MTLRSILAASLLLLPLLATAHNFVDGQRVAPVGVADRGELILDKDKFSYKT 51


>UniRef50_A6QB01 Transcriptional regulator n=1 Tax=Sulfurovum sp. NBC37-1
           RepID=A6QB01_SULNB
          Length = 170

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 95/182 (52%), Gaps = 13/182 (7%)

Query: 3   LRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVR 62
           ++KI+ L CLL  +  S+   E G+  P + ++      +D        W+S+ L GKV 
Sbjct: 1   MKKII-LGCLLTAV--SSMAIELGKVPPSVELSGASGGKVDG-----TAWSSSMLKGKVH 52

Query: 63  VLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDA-IPGSGMFVRSSLESNK 121
           +L ++      ++ N  L +A+K       +Y +  ++N     +P   + + S L++ +
Sbjct: 53  ILFYV--DPDERDLNKALTQALKKRHFDRKKYASVAVINLAATWLPN--VILESKLKAKQ 108

Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181
           K +P + ++ D   V L  W L +++S +++ DK G++ + K G L+ +E++ V+ L++K
Sbjct: 109 KEFPDTIYVKDKKKVVLKKWDLADDNSDILIFDKSGKLIYKKFGKLSDKEIKSVLALIEK 168

Query: 182 LL 183
            L
Sbjct: 169 NL 170


>UniRef50_A9GVB8 Putative uncharacterized protein n=1 Tax=Sorangium cellulosum 'So
           ce 56' RepID=A9GVB8_SORC5
          Length = 193

 Score = 43.5 bits (101), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 11/116 (9%)

Query: 73  AKEKNATLIEAIKSAKLPH-DRYQ------TTTIVNTDDAIPGSGMFVRSSLESNKKLYP 125
           +K +N  L +A+  AKL   DRY+          V++ D  P  G    +  E +KK+  
Sbjct: 78  SKTQNQALKDAL--AKLTKGDRYRRGIAVAAIADVSSYDFWPARGFVKDAIREESKKV-- 133

Query: 126 WSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181
                 D +G    A++L    S VVV+ K+G V +A +GAL PE   +V++LL+K
Sbjct: 134 GGTIYCDWDGSFRAAYKLRRGVSNVVVVGKNGHVLFAAEGALKPESQSRVLELLRK 189


>UniRef50_P24508 Sucrose operon repressor n=1 Tax=Vibrio alginolyticus
           RepID=SCRR_VIBAL
          Length = 94

 Score = 42.4 bits (98), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 32/42 (76%)

Query: 140 AWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181
           A  L EESSA++V DK G+V + K+GAL  +E+ +V++L+++
Sbjct: 51  AKDLKEESSAIIVQDKTGKVLFVKEGALEQDEIAKVIELIKQ 92


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P39187 Uncharacterized protein ytfJ n=198 Tax=Gammaprot...   253   2e-66
UniRef50_C6CAS8 Putative uncharacterized protein n=1 Tax=Dickeya...   240   1e-62
UniRef50_C3NV58 Protein YtfJ n=54 Tax=Gammaproteobacteria RepID=...   236   2e-61
UniRef50_P44478 Uncharacterized protein HI0045 n=25 Tax=Pasteure...   224   8e-58
UniRef50_C9PS15 Transcriptional regulator YtfJ n=2 Tax=Gammaprot...   224   1e-57
UniRef50_Q5E822 Predicted transcriptional regulator n=21 Tax=Vib...   224   1e-57
UniRef50_A6FG85 Putative uncharacterized protein n=1 Tax=Moritel...   221   1e-56
UniRef50_A0YEF3 Putative uncharacterized protein n=1 Tax=marine ...   201   7e-51
UniRef50_B7RUM8 Putative uncharacterized protein n=1 Tax=marine ...   194   2e-48
UniRef50_A0Z1Q9 Predicted transcriptional regulator n=1 Tax=mari...   186   4e-46
UniRef50_A6Q2B2 Transcriptional regulator n=1 Tax=Nitratiruptor ...   172   5e-42
UniRef50_A6QB01 Transcriptional regulator n=1 Tax=Sulfurovum sp....   155   7e-37
UniRef50_A4P185 Putative uncharacterized protein n=2 Tax=Haemoph...   153   2e-36
UniRef50_C8TCQ6 Transcriptional regulator YtfJ n=1 Tax=Klebsiell...    47   3e-04

Sequences not found previously or not previously below threshold:

UniRef50_A9GVB8 Putative uncharacterized protein n=1 Tax=Sorangi...    56   7e-07
UniRef50_B0MXT5 Putative uncharacterized protein n=1 Tax=Alistip...    52   7e-06
UniRef50_P24508 Sucrose operon repressor n=1 Tax=Vibrio alginoly...    50   3e-05
UniRef50_Q09AT1 Putative uncharacterized protein n=1 Tax=Stigmat...    44   0.002
UniRef50_Q1DDW9 Putative uncharacterized protein n=1 Tax=Myxococ...    43   0.005
UniRef50_Q1N0M7 Thiol:disulfide interchange protein DsbE, putati...    41   0.020

>UniRef50_P39187 Uncharacterized protein ytfJ n=198 Tax=Gammaproteobacteria
           RepID=YTFJ_ECOLI
          Length = 184

 Score =  253 bits (645), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 184/184 (100%), Positives = 184/184 (100%)

Query: 1   MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60
           MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK
Sbjct: 1   MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60

Query: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120
           VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN
Sbjct: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120

Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180
           KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ
Sbjct: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180

Query: 181 KLLK 184
           KLLK
Sbjct: 181 KLLK 184


>UniRef50_C6CAS8 Putative uncharacterized protein n=1 Tax=Dickeya dadantii Ech703
           RepID=C6CAS8_DICDC
          Length = 201

 Score =  240 bits (613), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 91/185 (49%), Positives = 127/185 (68%), Gaps = 2/185 (1%)

Query: 1   MTLRKILALTCLL--LPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLV 58
           MT R  L    +L   P    AH     + +P + ++D GEL     +  Y +W+SAQLV
Sbjct: 1   MTRRACLLTIWVLLIFPRWLPAHILPLYRMLPDVVVSDGGELQYQDGKPHYLSWSSAQLV 60

Query: 59  GKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLE 118
           GKVR++QHIAGR SA+  N TL+ A+K+A LP + YQTTTIVN D+A+ G+G FVR  +E
Sbjct: 61  GKVRLIQHIAGRMSARNMNETLMTALKAANLPREYYQTTTIVNADEAVIGTGFFVRKRIE 120

Query: 119 SNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDL 178
           + K  YPW+QF++D+ G    AWQL  +S+AV+VLDK+GR+++ KDG+L  +EVQQV++L
Sbjct: 121 AGKTQYPWTQFVLDNQGEVRKAWQLTPKSAAVIVLDKEGRIRYVKDGSLNRQEVQQVVNL 180

Query: 179 LQKLL 183
           LQ LL
Sbjct: 181 LQVLL 185


>UniRef50_C3NV58 Protein YtfJ n=54 Tax=Gammaproteobacteria RepID=C3NV58_VIBCJ
          Length = 183

 Score =  236 bits (603), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 86/183 (46%), Positives = 121/183 (66%)

Query: 1   MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60
           M  + ++AL     P +A AH    G  VP +G+   GE+VL  +  +Y+ W SA L+GK
Sbjct: 1   MKNKTLIALLLACSPTLAFAHNLTVGSPVPAVGVEKHGEIVLQDNNINYQKWRSADLLGK 60

Query: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120
           VRV+Q IAGR+S+KE NA L+ AI +AK P + YQTTTI+N DDAI G+  FV+SS + +
Sbjct: 61  VRVIQAIAGRSSSKEMNAPLMAAITAAKFPAESYQTTTIINQDDAIWGTSSFVKSSAQDS 120

Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180
           KK +PWS  ++D  G+   AWQL  ESSA++V DK G V + K+GAL   ++Q V+ L+Q
Sbjct: 121 KKEFPWSSMVLDEFGLVAQAWQLQAESSAIIVQDKQGNVLFVKEGALNEADIQTVLGLIQ 180

Query: 181 KLL 183
           + L
Sbjct: 181 QNL 183


>UniRef50_P44478 Uncharacterized protein HI0045 n=25 Tax=Pasteurellaceae
           RepID=Y045_HAEIN
          Length = 184

 Score =  224 bits (572), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 74/182 (40%), Positives = 118/182 (64%), Gaps = 1/182 (0%)

Query: 4   RKILALTC-LLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVR 62
           ++ILAL C ++      AH  +  Q +P + +++ GE+VL      ++ W SA+L GKVR
Sbjct: 3   KQILALVCGVIFSSSTWAHNLQLEQSLPSVKVSEYGEIVLSGKDTVFQPWGSAELAGKVR 62

Query: 63  VLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKK 122
           V+ H+AGRT+AKE N ++I+ IK++     +YQTTTI+N DDAI G+GMFV++  +  K+
Sbjct: 63  VVHHLAGRTAAKEXNQSMIDVIKASHFNPVKYQTTTIINADDAIVGTGMFVKNGAKKGKQ 122

Query: 123 LYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKL 182
             P SQ ++D       AW L+ + SA++VLDK G+V++ K+G L+  ++Q V+ L+  L
Sbjct: 123 ENPHSQVVLDDKSAVKNAWGLNSKDSAIIVLDKTGKVKFVKEGKLSDSDIQTVISLVNGL 182

Query: 183 LK 184
            K
Sbjct: 183 TK 184


>UniRef50_C9PS15 Transcriptional regulator YtfJ n=2 Tax=Gammaproteobacteria
           RepID=C9PS15_9PAST
          Length = 191

 Score =  224 bits (571), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 78/179 (43%), Positives = 112/179 (62%)

Query: 6   ILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRVLQ 65
           +L L  +       AH  +    + P+ + + GEL +  D  SYK W+S QLVGKVR++ 
Sbjct: 13  VLGLAAVFCSTGLFAHNIQLNSPLAPVSVEEDGELSVKGDDVSYKAWSSVQLVGKVRIVN 72

Query: 66  HIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKLYP 125
           H AGR   K++N TLI AIK+A+    +YQTTTI+N DDA  G+G FV+S  E  KK  P
Sbjct: 73  HFAGRRDVKDRNETLINAIKAAQFDRSKYQTTTIINADDATFGTGSFVKSGAEKGKKKNP 132

Query: 126 WSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLLK 184
            SQ ++D  G    AWQL E+ + V+VLDK G+V++  +GAL+  +VQ+V+ L+ +L K
Sbjct: 133 HSQVVLDQRGAVKNAWQLKEKENLVIVLDKSGKVKFVHEGALSGAQVQEVISLITELTK 191


>UniRef50_Q5E822 Predicted transcriptional regulator n=21 Tax=Vibrionales
           RepID=Q5E822_VIBF1
          Length = 183

 Score =  224 bits (571), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 81/183 (44%), Positives = 115/183 (62%)

Query: 1   MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60
           M   K+L L   LLP ++ AH     + VP + I   GE+       +Y+ WN+ QL GK
Sbjct: 1   MKKVKLLTLAACLLPSLSFAHNLTLNKEVPSVSIEQYGEIFFKNSAATYQNWNTEQLKGK 60

Query: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120
           VRVLQ IAGR+SAK  NA L+ AI   K P   YQTTTI+N DD+I G+G FV+SS E +
Sbjct: 61  VRVLQAIAGRSSAKAMNADLMSAITLEKFPETEYQTTTIINQDDSIWGTGGFVKSSAEES 120

Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180
           K+ + WS  ++D +G    AW L  ESSA++V DK+G++ + K+G L+ +E++QV+ L+ 
Sbjct: 121 KEEFSWSSMVLDEHGKVAKAWDLQPESSAIIVQDKEGKILFVKEGKLSNDEIKQVIALIH 180

Query: 181 KLL 183
             L
Sbjct: 181 TQL 183


>UniRef50_A6FG85 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36
           RepID=A6FG85_9GAMM
          Length = 182

 Score =  221 bits (562), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/182 (39%), Positives = 118/182 (64%), Gaps = 1/182 (0%)

Query: 3   LRKILALTCL-LLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61
           ++KIL +  L L   +A +H    G+ +P + ITD+G + L +  F Y+ W SA+L  KV
Sbjct: 1   MKKILTVIALSLTSFVALSHSLTVGENLPQVTITDKGYVDLVEGDFEYRQWTSAELQNKV 60

Query: 62  RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121
            ++QHIAGRTSAKE N  +I+A+ +A  P ++Y T T+VN D++I G+G  V S ++SNK
Sbjct: 61  ILIQHIAGRTSAKELNDPMIDAVIAADFPFEKYNTATLVNLDESIWGTGAIVASQVKSNK 120

Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181
           + +P + F++DS G     W L E+SSA+++LD+ G++ + KDG + P E+  V+ ++  
Sbjct: 121 EEFPDAIFVLDSEGAMRKTWALTEKSSAIILLDQAGKILYVKDGEMNPTEIDTVIGIINA 180

Query: 182 LL 183
            +
Sbjct: 181 NI 182


>UniRef50_A0YEF3 Putative uncharacterized protein n=1 Tax=marine gamma
           proteobacterium HTCC2143 RepID=A0YEF3_9GAMM
          Length = 185

 Score =  201 bits (512), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 5/179 (2%)

Query: 6   ILALTCLLLPMMASAHQFETGQ----RVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61
           I  L C +     S   F  G      +P + I DRGEL+++K  FS++ W++    GKV
Sbjct: 3   IQQLVCGVFLAFISTLAFAQGPLVDSPLPALTIADRGELLMEKGDFSFRPWSTEHNPGKV 62

Query: 62  RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121
            ++Q+     S  E      + ++ + L   +Y  TTIVN D A+ G+  FV S L+SNK
Sbjct: 63  HIVQYFGATKSDSELFKPFTDLLQDS-LGVGKYHVTTIVNLDAAVWGTSSFVISELKSNK 121

Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180
           + YP S  ++D  G  +G W+L EE + + ++D++G V++     +T  E+   +DL++
Sbjct: 122 RKYPLSTIVLDQEGSGIGRWKLGEEGAGLAIIDQEGVVRYFTKTPMTDAEMDASLDLVK 180


>UniRef50_B7RUM8 Putative uncharacterized protein n=1 Tax=marine gamma
           proteobacterium HTCC2148 RepID=B7RUM8_9GAMM
          Length = 186

 Score =  194 bits (492), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 2/183 (1%)

Query: 2   TLRKILALTCLLLPMMASAH-QFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60
           T++ + +L  L L  +++A      G+ +PP+ I+  GE++LD D   Y+ WNS   V K
Sbjct: 3   TVKTLTSLAGLFLLSLSTASFAATVGEPLPPLAISQPGEIMLDGDGIGYQPWNSQNTVDK 62

Query: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120
           V V+Q+I    SA +      + ++        +  TT+++ D A+ G+   V S +E N
Sbjct: 63  VHVVQYIPATMSASKMYRPFTDYLEE-NYDPSHFHVTTVIDLDAALWGTSGLVSSEVEKN 121

Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180
           K+ YP S  ++D  G  +G W L +  S + ++D+ G V +A    +   E +   ++  
Sbjct: 122 KRKYPLSTLVLDKTGSGIGTWSLGKNGSGLFIVDETGIVHFAIRHKMDATEQRDAEEVFS 181

Query: 181 KLL 183
            L+
Sbjct: 182 TLV 184


>UniRef50_A0Z1Q9 Predicted transcriptional regulator n=1 Tax=marine gamma
           proteobacterium HTCC2080 RepID=A0Z1Q9_9GAMM
          Length = 181

 Score =  186 bits (472), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 92/180 (51%), Gaps = 5/180 (2%)

Query: 7   LALTCLLLPMMASAH---QFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRV 63
           + L    LP  A A+       G+ +PP+ IT+ G+++LD D +S   W+      KV+V
Sbjct: 1   MGLLLWSLPGYAEANATANLILGEPLPPVTITEGGQVILDGDGYSLAPWSWPGSSNKVQV 60

Query: 64  LQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKL 123
           LQ++AG     +    + E ++  +L  DRY  T +VN +        FVRS++   +++
Sbjct: 61  LQYVAGTRKGGDLYDPMTERMR-RELDFDRYDITAVVNLEVTSAFVKPFVRSAVVDEQRI 119

Query: 124 YPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLL 183
           +  +  ++D  G+    W L ++ +A VV+D+ G V     GA +  + ++   +L+ L+
Sbjct: 120 FTRATLVLDERGIGQATWNLTQQ-AAFVVVDRKGLVVDVILGAPSEADFERSFQVLRDLI 178


>UniRef50_A6Q2B2 Transcriptional regulator n=1 Tax=Nitratiruptor sp. SB155-2
           RepID=A6Q2B2_NITSB
          Length = 173

 Score =  172 bits (436), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 92/184 (50%), Gaps = 18/184 (9%)

Query: 3   LRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQ---FSYKTWNSAQLVG 59
           ++K+  L+ +   +MA     E G        T    +VL+KD+        +++A + G
Sbjct: 1   MKKVFMLSIIACFLMA----LEIG--------TIPKRVVLEKDKGGTIDGSPFDTASMKG 48

Query: 60  KVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLES 119
           KV ++  I      ++ N    E +K+     +RY +  I+N           + + L++
Sbjct: 49  KVYLV--IYSDPDKRDLNEPFFEKVKAKNFDRNRYTSIAIINMAAT-WIPNFLLNAILKA 105

Query: 120 NKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLL 179
            +K YP++ ++ D+  V + AWQL +    V++ D++GRVQ+   G L+ +E ++ + +L
Sbjct: 106 KQKKYPYTVYVKDNKKVLVHAWQLPDNDQVVMIFDQNGRVQYIGHGKLSQKEQERALHIL 165

Query: 180 QKLL 183
           ++L+
Sbjct: 166 EELI 169


>UniRef50_A6QB01 Transcriptional regulator n=1 Tax=Sulfurovum sp. NBC37-1
           RepID=A6QB01_SULNB
          Length = 170

 Score =  155 bits (391), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 11/181 (6%)

Query: 3   LRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVR 62
           ++KI+ L CLL  +  S+   E G+  P + ++          +     W+S+ L GKV 
Sbjct: 1   MKKII-LGCLLTAV--SSMAIELGKVPPSVELSGAS-----GGKVDGTAWSSSMLKGKVH 52

Query: 63  VLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKK 122
           +L ++      ++ N  L +A+K       +Y +  ++N         + + S L++ +K
Sbjct: 53  ILFYV--DPDERDLNKALTQALKKRHFDRKKYASVAVINLAAT-WLPNVILESKLKAKQK 109

Query: 123 LYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKL 182
            +P + ++ D   V L  W L +++S +++ DK G++ + K G L+ +E++ V+ L++K 
Sbjct: 110 EFPDTIYVKDKKKVVLKKWDLADDNSDILIFDKSGKLIYKKFGKLSDKEIKSVLALIEKN 169

Query: 183 L 183
           L
Sbjct: 170 L 170


>UniRef50_A4P185 Putative uncharacterized protein n=2 Tax=Haemophilus influenzae
           RepID=A4P185_HAEIN
          Length = 130

 Score =  153 bits (387), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/121 (42%), Positives = 81/121 (66%), Gaps = 1/121 (0%)

Query: 4   RKILALTC-LLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVR 62
           ++ILAL C ++      AH  +  Q +P + +T+ GE+VL     +++ W SA+L GKVR
Sbjct: 3   KQILALVCGVMFSSSTWAHNLQLEQSLPAVQVTEYGEIVLSGKDTAFQPWGSAELAGKVR 62

Query: 63  VLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKK 122
           V+ H+AGRT+AKEKN ++I+ IK++     +YQTTTI+N DDAI G+GMFV++  +   +
Sbjct: 63  VVHHLAGRTAAKEKNQSMIDVIKASHFNPVKYQTTTIINADDAIVGTGMFVKNGAKKANR 122

Query: 123 L 123
            
Sbjct: 123 K 123


>UniRef50_A9GVB8 Putative uncharacterized protein n=1 Tax=Sorangium cellulosum 'So
           ce 56' RepID=A9GVB8_SORC5
          Length = 193

 Score = 55.8 bits (133), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 7/144 (4%)

Query: 45  DQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAI-KSAKLPHDRYQTTTIVNTD 103
           +    +      L GK  ++  +     +K +N  L +A+ K  K    R         D
Sbjct: 52  EDADGRALQLKALQGKPILI--VYEDKDSKTQNQALKDALAKLTKGDRYRRGIAVAAIAD 109

Query: 104 DAI---PGSGMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQ 160
            +      +  FV+ ++    K    + +  D +G    A++L    S VVV+ K+G V 
Sbjct: 110 VSSYDFWPARGFVKDAIREESKKVGGTIYC-DWDGSFRAAYKLRRGVSNVVVVGKNGHVL 168

Query: 161 WAKDGALTPEEVQQVMDLLQKLLK 184
           +A +GAL PE   +V++LL+K ++
Sbjct: 169 FAAEGALKPESQSRVLELLRKEVE 192


>UniRef50_B0MXT5 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM
           17216 RepID=B0MXT5_9BACT
          Length = 173

 Score = 52.4 bits (124), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 59/154 (38%), Gaps = 11/154 (7%)

Query: 31  PIGITDRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAK-L 89
           P  ++D   L L+ D      W    L     ++ +I       ++N      ++    +
Sbjct: 26  PRKVSDVTLLDLNGDPTQLPYWGEKNL-----MIFYI--DPDHHKQNEDFTTDMEENHRV 78

Query: 90  PHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESS- 148
             +      ++N  DA        R+           +  + D N     AWQL + ++ 
Sbjct: 79  EGENLFGFGVMNLKDAPMIPNGMARNMARKRTASNG-ATVLADQNNTLRDAWQLGDCNNM 137

Query: 149 -AVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181
             ++++ K+G + + + G L+  + ++   ++QK
Sbjct: 138 FVLLLVSKEGDLVFMRKGPLSDADKKEFYQVVQK 171


>UniRef50_P24508 Sucrose operon repressor n=1 Tax=Vibrio alginolyticus
           RepID=SCRR_VIBAL
          Length = 94

 Score = 50.4 bits (119), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 32/42 (76%)

Query: 142 QLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLL 183
            L EESSA++V DK G+V + K+GAL  +E+ +V++L+++ +
Sbjct: 53  DLKEESSAIIVQDKTGKVLFVKEGALEQDEIAKVIELIKQNI 94


>UniRef50_C8TCQ6 Transcriptional regulator YtfJ n=1 Tax=Klebsiella pneumoniae
          subsp. rhinoscleromatis ATCC 13884 RepID=C8TCQ6_KLEPR
          Length = 79

 Score = 47.0 bits (110), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/51 (68%), Positives = 43/51 (84%)

Query: 1  MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKT 51
          MTLR ILA + LLLP++A+AH F  GQRV P+G+ DRGEL+LDKD+FSYKT
Sbjct: 1  MTLRSILAASLLLLPLLATAHNFVDGQRVAPVGVADRGELILDKDKFSYKT 51


>UniRef50_Q09AT1 Putative uncharacterized protein n=1 Tax=Stigmatella aurantiaca
           DW4/3-1 RepID=Q09AT1_STIAU
          Length = 156

 Score = 44.3 bits (103), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 59  GKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQT---TTIVNTDDAIPGSG-MFVR 114
           GK  +L +      +   NA L E +           +     + N +            
Sbjct: 20  GKPVILFY--EDKDSVNLNAKLKERLFELARERGLKDSAWVIAVANLEKFNFFPARQIAL 77

Query: 115 SSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQ 174
           S ++  +K       +     +    W+L  ++S V++LD +G + +   G +  ++++ 
Sbjct: 78  SYVKDEEKKAGVPILVDLEGTLGAEPWKLPMKTSTVMLLDAEGILLYRYSGRMAEKDMEL 137

Query: 175 VMDLLQKLL 183
            + LL +L+
Sbjct: 138 FIALLARLV 146


>UniRef50_Q1DDW9 Putative uncharacterized protein n=1 Tax=Myxococcus xanthus DK 1622
           RepID=Q1DDW9_MYXXD
          Length = 209

 Score = 42.7 bits (99), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 11/144 (7%)

Query: 44  KDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQ---TTTIV 100
             +     W      GK  +L +      + + N+TL + + +               + 
Sbjct: 59  GKEVRLSKWR-----GKPVILFY--EDKDSTKLNSTLKKELFARGQERGILDAAWVLAVA 111

Query: 101 NTDDAIPGSG-MFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRV 159
           N  +           S +   +K       +     +    W+L  ++S +V+LD +G +
Sbjct: 112 NLQNFDFFPARQIALSFVRDEEKKVGVPILVDMDGALGKAPWKLPLKTSNIVLLDAEGAL 171

Query: 160 QWAKDGALTPEEVQQVMDLLQKLL 183
            +   G + P+E+     +L +L+
Sbjct: 172 VYRHSGRMKPDELMTFFAVLSRLV 195


>UniRef50_Q1N0M7 Thiol:disulfide interchange protein DsbE, putative n=1
           Tax=Bermanella marisrubri RepID=Q1N0M7_9GAMM
          Length = 166

 Score = 40.8 bits (94), Expect = 0.020,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 80/185 (43%), Gaps = 24/185 (12%)

Query: 2   TLRKILALTCLLLPMMASAHQFET--GQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVG 59
           +++ +L++  L + +M SA       GQ  P   +     L+  + + S K +      G
Sbjct: 3   SIKTVLSMLLLSVGLMFSAASIAIEKGQTAPNFRLP----LLDSQKKVSLKQYR-----G 53

Query: 60  KVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLES 119
           KV  +   A       ++  L+  +++ ++    ++    +N D+ +  +  F+      
Sbjct: 54  KVVYVDFWASWCGPCRQSLPLLTKLRA-EMKKQPFEVLA-INLDEEVDAAKGFL------ 105

Query: 120 NKKLYPWSQFIV-DSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDL 178
             K YP +  ++ D  G     +QL    ++ +V DK GR++    G   P+++ ++   
Sbjct: 106 --KQYPVNYPVLLDPEGNVAAQYQLPGMPTSFIV-DKRGRIKHVHVG-FKPQDIDKIRQQ 161

Query: 179 LQKLL 183
           ++ LL
Sbjct: 162 VKSLL 166


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P39187 Uncharacterized protein ytfJ n=198 Tax=Gammaprot...   231   8e-60
UniRef50_C3NV58 Protein YtfJ n=54 Tax=Gammaproteobacteria RepID=...   224   1e-57
UniRef50_C6CAS8 Putative uncharacterized protein n=1 Tax=Dickeya...   221   8e-57
UniRef50_Q5E822 Predicted transcriptional regulator n=21 Tax=Vib...   214   1e-54
UniRef50_P44478 Uncharacterized protein HI0045 n=25 Tax=Pasteure...   213   2e-54
UniRef50_C9PS15 Transcriptional regulator YtfJ n=2 Tax=Gammaprot...   213   2e-54
UniRef50_A6FG85 Putative uncharacterized protein n=1 Tax=Moritel...   206   2e-52
UniRef50_B7RUM8 Putative uncharacterized protein n=1 Tax=marine ...   200   1e-50
UniRef50_A0YEF3 Putative uncharacterized protein n=1 Tax=marine ...   188   6e-47
UniRef50_A0Z1Q9 Predicted transcriptional regulator n=1 Tax=mari...   178   8e-44
UniRef50_A6Q2B2 Transcriptional regulator n=1 Tax=Nitratiruptor ...   162   5e-39
UniRef50_A6QB01 Transcriptional regulator n=1 Tax=Sulfurovum sp....   151   1e-35
UniRef50_A4P185 Putative uncharacterized protein n=2 Tax=Haemoph...   148   7e-35
UniRef50_B0MXT5 Putative uncharacterized protein n=1 Tax=Alistip...   132   5e-30
UniRef50_A9GVB8 Putative uncharacterized protein n=1 Tax=Sorangi...   119   5e-26
UniRef50_Q09AT1 Putative uncharacterized protein n=1 Tax=Stigmat...   104   1e-21
UniRef50_P24508 Sucrose operon repressor n=1 Tax=Vibrio alginoly...    52   6e-06
UniRef50_C8TCQ6 Transcriptional regulator YtfJ n=1 Tax=Klebsiell...    45   8e-04

Sequences not found previously or not previously below threshold:

UniRef50_Q1DDW9 Putative uncharacterized protein n=1 Tax=Myxococ...    90   3e-17
UniRef50_A9WI14 Alkyl hydroperoxide reductase/ Thiol specific an...    44   0.003
UniRef50_C4ZMJ8 Redoxin domain protein n=1 Tax=Thauera sp. MZ1T ...    44   0.004
UniRef50_A9I0L2 Predicted thioredoxin n=6 Tax=Betaproteobacteria...    43   0.004
UniRef50_C6AMB8 ResA n=6 Tax=Pasteurellaceae RepID=C6AMB8_AGGAN        43   0.005
UniRef50_Q0AXB8 Sensor protein n=1 Tax=Syntrophomonas wolfei sub...    42   0.009
UniRef50_B3U4I8 Putative thioredoxin n=1 Tax=Candidatus Nitrospi...    41   0.019
UniRef50_Q020C0 Putative uncharacterized protein n=1 Tax=Candida...    40   0.026

>UniRef50_P39187 Uncharacterized protein ytfJ n=198 Tax=Gammaproteobacteria
           RepID=YTFJ_ECOLI
          Length = 184

 Score =  231 bits (589), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 184/184 (100%), Positives = 184/184 (100%)

Query: 1   MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60
           MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK
Sbjct: 1   MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60

Query: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120
           VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN
Sbjct: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120

Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180
           KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ
Sbjct: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180

Query: 181 KLLK 184
           KLLK
Sbjct: 181 KLLK 184


>UniRef50_C3NV58 Protein YtfJ n=54 Tax=Gammaproteobacteria RepID=C3NV58_VIBCJ
          Length = 183

 Score =  224 bits (570), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 86/183 (46%), Positives = 121/183 (66%)

Query: 1   MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60
           M  + ++AL     P +A AH    G  VP +G+   GE+VL  +  +Y+ W SA L+GK
Sbjct: 1   MKNKTLIALLLACSPTLAFAHNLTVGSPVPAVGVEKHGEIVLQDNNINYQKWRSADLLGK 60

Query: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120
           VRV+Q IAGR+S+KE NA L+ AI +AK P + YQTTTI+N DDAI G+  FV+SS + +
Sbjct: 61  VRVIQAIAGRSSSKEMNAPLMAAITAAKFPAESYQTTTIINQDDAIWGTSSFVKSSAQDS 120

Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180
           KK +PWS  ++D  G+   AWQL  ESSA++V DK G V + K+GAL   ++Q V+ L+Q
Sbjct: 121 KKEFPWSSMVLDEFGLVAQAWQLQAESSAIIVQDKQGNVLFVKEGALNEADIQTVLGLIQ 180

Query: 181 KLL 183
           + L
Sbjct: 181 QNL 183


>UniRef50_C6CAS8 Putative uncharacterized protein n=1 Tax=Dickeya dadantii Ech703
           RepID=C6CAS8_DICDC
          Length = 201

 Score =  221 bits (563), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 91/185 (49%), Positives = 127/185 (68%), Gaps = 2/185 (1%)

Query: 1   MTLRKILALTCLL--LPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLV 58
           MT R  L    +L   P    AH     + +P + ++D GEL     +  Y +W+SAQLV
Sbjct: 1   MTRRACLLTIWVLLIFPRWLPAHILPLYRMLPDVVVSDGGELQYQDGKPHYLSWSSAQLV 60

Query: 59  GKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLE 118
           GKVR++QHIAGR SA+  N TL+ A+K+A LP + YQTTTIVN D+A+ G+G FVR  +E
Sbjct: 61  GKVRLIQHIAGRMSARNMNETLMTALKAANLPREYYQTTTIVNADEAVIGTGFFVRKRIE 120

Query: 119 SNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDL 178
           + K  YPW+QF++D+ G    AWQL  +S+AV+VLDK+GR+++ KDG+L  +EVQQV++L
Sbjct: 121 AGKTQYPWTQFVLDNQGEVRKAWQLTPKSAAVIVLDKEGRIRYVKDGSLNRQEVQQVVNL 180

Query: 179 LQKLL 183
           LQ LL
Sbjct: 181 LQVLL 185


>UniRef50_Q5E822 Predicted transcriptional regulator n=21 Tax=Vibrionales
           RepID=Q5E822_VIBF1
          Length = 183

 Score =  214 bits (544), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 81/183 (44%), Positives = 115/183 (62%)

Query: 1   MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60
           M   K+L L   LLP ++ AH     + VP + I   GE+       +Y+ WN+ QL GK
Sbjct: 1   MKKVKLLTLAACLLPSLSFAHNLTLNKEVPSVSIEQYGEIFFKNSAATYQNWNTEQLKGK 60

Query: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120
           VRVLQ IAGR+SAK  NA L+ AI   K P   YQTTTI+N DD+I G+G FV+SS E +
Sbjct: 61  VRVLQAIAGRSSAKAMNADLMSAITLEKFPETEYQTTTIINQDDSIWGTGGFVKSSAEES 120

Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180
           K+ + WS  ++D +G    AW L  ESSA++V DK+G++ + K+G L+ +E++QV+ L+ 
Sbjct: 121 KEEFSWSSMVLDEHGKVAKAWDLQPESSAIIVQDKEGKILFVKEGKLSNDEIKQVIALIH 180

Query: 181 KLL 183
             L
Sbjct: 181 TQL 183


>UniRef50_P44478 Uncharacterized protein HI0045 n=25 Tax=Pasteurellaceae
           RepID=Y045_HAEIN
          Length = 184

 Score =  213 bits (542), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/183 (40%), Positives = 118/183 (64%), Gaps = 1/183 (0%)

Query: 3   LRKILALTC-LLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61
            ++ILAL C ++      AH  +  Q +P + +++ GE+VL      ++ W SA+L GKV
Sbjct: 2   KKQILALVCGVIFSSSTWAHNLQLEQSLPSVKVSEYGEIVLSGKDTVFQPWGSAELAGKV 61

Query: 62  RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121
           RV+ H+AGRT+AKE N ++I+ IK++     +YQTTTI+N DDAI G+GMFV++  +  K
Sbjct: 62  RVVHHLAGRTAAKEXNQSMIDVIKASHFNPVKYQTTTIINADDAIVGTGMFVKNGAKKGK 121

Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181
           +  P SQ ++D       AW L+ + SA++VLDK G+V++ K+G L+  ++Q V+ L+  
Sbjct: 122 QENPHSQVVLDDKSAVKNAWGLNSKDSAIIVLDKTGKVKFVKEGKLSDSDIQTVISLVNG 181

Query: 182 LLK 184
           L K
Sbjct: 182 LTK 184


>UniRef50_C9PS15 Transcriptional regulator YtfJ n=2 Tax=Gammaproteobacteria
           RepID=C9PS15_9PAST
          Length = 191

 Score =  213 bits (542), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/179 (43%), Positives = 112/179 (62%)

Query: 6   ILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRVLQ 65
           +L L  +       AH  +    + P+ + + GEL +  D  SYK W+S QLVGKVR++ 
Sbjct: 13  VLGLAAVFCSTGLFAHNIQLNSPLAPVSVEEDGELSVKGDDVSYKAWSSVQLVGKVRIVN 72

Query: 66  HIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKLYP 125
           H AGR   K++N TLI AIK+A+    +YQTTTI+N DDA  G+G FV+S  E  KK  P
Sbjct: 73  HFAGRRDVKDRNETLINAIKAAQFDRSKYQTTTIINADDATFGTGSFVKSGAEKGKKKNP 132

Query: 126 WSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLLK 184
            SQ ++D  G    AWQL E+ + V+VLDK G+V++  +GAL+  +VQ+V+ L+ +L K
Sbjct: 133 HSQVVLDQRGAVKNAWQLKEKENLVIVLDKSGKVKFVHEGALSGAQVQEVISLITELTK 191


>UniRef50_A6FG85 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36
           RepID=A6FG85_9GAMM
          Length = 182

 Score =  206 bits (525), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/182 (39%), Positives = 118/182 (64%), Gaps = 1/182 (0%)

Query: 3   LRKILALTCL-LLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61
           ++KIL +  L L   +A +H    G+ +P + ITD+G + L +  F Y+ W SA+L  KV
Sbjct: 1   MKKILTVIALSLTSFVALSHSLTVGENLPQVTITDKGYVDLVEGDFEYRQWTSAELQNKV 60

Query: 62  RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121
            ++QHIAGRTSAKE N  +I+A+ +A  P ++Y T T+VN D++I G+G  V S ++SNK
Sbjct: 61  ILIQHIAGRTSAKELNDPMIDAVIAADFPFEKYNTATLVNLDESIWGTGAIVASQVKSNK 120

Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181
           + +P + F++DS G     W L E+SSA+++LD+ G++ + KDG + P E+  V+ ++  
Sbjct: 121 EEFPDAIFVLDSEGAMRKTWALTEKSSAIILLDQAGKILYVKDGEMNPTEIDTVIGIINA 180

Query: 182 LL 183
            +
Sbjct: 181 NI 182


>UniRef50_B7RUM8 Putative uncharacterized protein n=1 Tax=marine gamma
           proteobacterium HTCC2148 RepID=B7RUM8_9GAMM
          Length = 186

 Score =  200 bits (509), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 2/183 (1%)

Query: 2   TLRKILALTCLLLPMMASAH-QFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60
           T++ + +L  L L  +++A      G+ +PP+ I+  GE++LD D   Y+ WNS   V K
Sbjct: 3   TVKTLTSLAGLFLLSLSTASFAATVGEPLPPLAISQPGEIMLDGDGIGYQPWNSQNTVDK 62

Query: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120
           V V+Q+I    SA +      + ++        +  TT+++ D A+ G+   V S +E N
Sbjct: 63  VHVVQYIPATMSASKMYRPFTDYLEE-NYDPSHFHVTTVIDLDAALWGTSGLVSSEVEKN 121

Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180
           K+ YP S  ++D  G  +G W L +  S + ++D+ G V +A    +   E +   ++  
Sbjct: 122 KRKYPLSTLVLDKTGSGIGTWSLGKNGSGLFIVDETGIVHFAIRHKMDATEQRDAEEVFS 181

Query: 181 KLL 183
            L+
Sbjct: 182 TLV 184


>UniRef50_A0YEF3 Putative uncharacterized protein n=1 Tax=marine gamma
           proteobacterium HTCC2143 RepID=A0YEF3_9GAMM
          Length = 185

 Score =  188 bits (478), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 5/183 (2%)

Query: 6   ILALTCLLLPMMASAHQFETGQ----RVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61
           I  L C +     S   F  G      +P + I DRGEL+++K  FS++ W++    GKV
Sbjct: 3   IQQLVCGVFLAFISTLAFAQGPLVDSPLPALTIADRGELLMEKGDFSFRPWSTEHNPGKV 62

Query: 62  RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121
            ++Q+     S  E      + ++ + L   +Y  TTIVN D A+ G+  FV S L+SNK
Sbjct: 63  HIVQYFGATKSDSELFKPFTDLLQDS-LGVGKYHVTTIVNLDAAVWGTSSFVISELKSNK 121

Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181
           + YP S  ++D  G  +G W+L EE + + ++D++G V++     +T  E+   +DL++ 
Sbjct: 122 RKYPLSTIVLDQEGSGIGRWKLGEEGAGLAIIDQEGVVRYFTKTPMTDAEMDASLDLVKA 181

Query: 182 LLK 184
            + 
Sbjct: 182 RVD 184


>UniRef50_A0Z1Q9 Predicted transcriptional regulator n=1 Tax=marine gamma
           proteobacterium HTCC2080 RepID=A0Z1Q9_9GAMM
          Length = 181

 Score =  178 bits (451), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 92/180 (51%), Gaps = 5/180 (2%)

Query: 7   LALTCLLLPMMASAH---QFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRV 63
           + L    LP  A A+       G+ +PP+ IT+ G+++LD D +S   W+      KV+V
Sbjct: 1   MGLLLWSLPGYAEANATANLILGEPLPPVTITEGGQVILDGDGYSLAPWSWPGSSNKVQV 60

Query: 64  LQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKL 123
           LQ++AG     +    + E ++  +L  DRY  T +VN +        FVRS++   +++
Sbjct: 61  LQYVAGTRKGGDLYDPMTERMR-RELDFDRYDITAVVNLEVTSAFVKPFVRSAVVDEQRI 119

Query: 124 YPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLL 183
           +  +  ++D  G+    W L ++ +A VV+D+ G V     GA +  + ++   +L+ L+
Sbjct: 120 FTRATLVLDERGIGQATWNLTQQ-AAFVVVDRKGLVVDVILGAPSEADFERSFQVLRDLI 178


>UniRef50_A6Q2B2 Transcriptional regulator n=1 Tax=Nitratiruptor sp. SB155-2
           RepID=A6Q2B2_NITSB
          Length = 173

 Score =  162 bits (410), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 87/181 (48%), Gaps = 12/181 (6%)

Query: 3   LRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVR 62
           ++K+  L+ +   +MA     E G     + +                 +++A + GKV 
Sbjct: 1   MKKVFMLSIIACFLMA----LEIGTIPKRVVLEKD-----KGGTIDGSPFDTASMKGKVY 51

Query: 63  VLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKK 122
           ++  I      ++ N    E +K+     +RY +  I+N   A       + + L++ +K
Sbjct: 52  LV--IYSDPDKRDLNEPFFEKVKAKNFDRNRYTSIAIINM-AATWIPNFLLNAILKAKQK 108

Query: 123 LYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKL 182
            YP++ ++ D+  V + AWQL +    V++ D++GRVQ+   G L+ +E ++ + +L++L
Sbjct: 109 KYPYTVYVKDNKKVLVHAWQLPDNDQVVMIFDQNGRVQYIGHGKLSQKEQERALHILEEL 168

Query: 183 L 183
           +
Sbjct: 169 I 169


>UniRef50_A6QB01 Transcriptional regulator n=1 Tax=Sulfurovum sp. NBC37-1
           RepID=A6QB01_SULNB
          Length = 170

 Score =  151 bits (381), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 93/181 (51%), Gaps = 11/181 (6%)

Query: 3   LRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVR 62
           ++KI+ L CLL  +  S+   E G+  P + ++          +     W+S+ L GKV 
Sbjct: 1   MKKII-LGCLLTAV--SSMAIELGKVPPSVELSGAS-----GGKVDGTAWSSSMLKGKVH 52

Query: 63  VLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKK 122
           +L ++      ++ N  L +A+K       +Y +  ++N   A     + + S L++ +K
Sbjct: 53  ILFYV--DPDERDLNKALTQALKKRHFDRKKYASVAVINL-AATWLPNVILESKLKAKQK 109

Query: 123 LYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKL 182
            +P + ++ D   V L  W L +++S +++ DK G++ + K G L+ +E++ V+ L++K 
Sbjct: 110 EFPDTIYVKDKKKVVLKKWDLADDNSDILIFDKSGKLIYKKFGKLSDKEIKSVLALIEKN 169

Query: 183 L 183
           L
Sbjct: 170 L 170


>UniRef50_A4P185 Putative uncharacterized protein n=2 Tax=Haemophilus influenzae
           RepID=A4P185_HAEIN
          Length = 130

 Score =  148 bits (374), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 52/129 (40%), Positives = 83/129 (64%), Gaps = 1/129 (0%)

Query: 3   LRKILALTC-LLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61
            ++ILAL C ++      AH  +  Q +P + +T+ GE+VL     +++ W SA+L GKV
Sbjct: 2   KKQILALVCGVMFSSSTWAHNLQLEQSLPAVQVTEYGEIVLSGKDTAFQPWGSAELAGKV 61

Query: 62  RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121
           RV+ H+AGRT+AKEKN ++I+ IK++     +YQTTTI+N DDAI G+GMFV++  +   
Sbjct: 62  RVVHHLAGRTAAKEKNQSMIDVIKASHFNPVKYQTTTIINADDAIVGTGMFVKNGAKKAN 121

Query: 122 KLYPWSQFI 130
           +    ++  
Sbjct: 122 RKIHIAKLC 130


>UniRef50_B0MXT5 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM
           17216 RepID=B0MXT5_9BACT
          Length = 173

 Score =  132 bits (332), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 59/154 (38%), Gaps = 11/154 (7%)

Query: 31  PIGITDRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAK-L 89
           P  ++D   L L+ D      W    L     ++ +I       ++N      ++    +
Sbjct: 26  PRKVSDVTLLDLNGDPTQLPYWGEKNL-----MIFYI--DPDHHKQNEDFTTDMEENHRV 78

Query: 90  PHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESS- 148
             +      ++N  DA        R+           +  + D N     AWQL + ++ 
Sbjct: 79  EGENLFGFGVMNLKDAPMIPNGMARNMARKRTASNG-ATVLADQNNTLRDAWQLGDCNNM 137

Query: 149 -AVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181
             ++++ K+G + + + G L+  + ++   ++QK
Sbjct: 138 FVLLLVSKEGDLVFMRKGPLSDADKKEFYQVVQK 171


>UniRef50_A9GVB8 Putative uncharacterized protein n=1 Tax=Sorangium cellulosum 'So
           ce 56' RepID=A9GVB8_SORC5
          Length = 193

 Score =  119 bits (298), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 7/144 (4%)

Query: 45  DQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAI-KSAKLPHDRYQTTTIVNTD 103
           +    +      L GK  ++  +     +K +N  L +A+ K  K    R         D
Sbjct: 52  EDADGRALQLKALQGKPILI--VYEDKDSKTQNQALKDALAKLTKGDRYRRGIAVAAIAD 109

Query: 104 DAI---PGSGMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQ 160
            +      +  FV+ ++    K    + +  D +G    A++L    S VVV+ K+G V 
Sbjct: 110 VSSYDFWPARGFVKDAIREESKKVGGTIYC-DWDGSFRAAYKLRRGVSNVVVVGKNGHVL 168

Query: 161 WAKDGALTPEEVQQVMDLLQKLLK 184
           +A +GAL PE   +V++LL+K ++
Sbjct: 169 FAAEGALKPESQSRVLELLRKEVE 192


>UniRef50_Q09AT1 Putative uncharacterized protein n=1 Tax=Stigmatella aurantiaca
           DW4/3-1 RepID=Q09AT1_STIAU
          Length = 156

 Score =  104 bits (260), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 51/145 (35%), Gaps = 11/145 (7%)

Query: 43  DKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQT---TTI 99
           +        W      GK  +L +      +   NA L E +           +     +
Sbjct: 9   EGTPVQLSRWR-----GKPVILFY--EDKDSVNLNAKLKERLFELARERGLKDSAWVIAV 61

Query: 100 VNTDDAIPGS-GMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGR 158
            N +            S ++  +K       +     +    W+L  ++S V++LD +G 
Sbjct: 62  ANLEKFNFFPARQIALSYVKDEEKKAGVPILVDLEGTLGAEPWKLPMKTSTVMLLDAEGI 121

Query: 159 VQWAKDGALTPEEVQQVMDLLQKLL 183
           + +   G +  ++++  + LL +L+
Sbjct: 122 LLYRYSGRMAEKDMELFIALLARLV 146


>UniRef50_Q1DDW9 Putative uncharacterized protein n=1 Tax=Myxococcus xanthus DK 1622
           RepID=Q1DDW9_MYXXD
          Length = 209

 Score = 90.2 bits (222), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 57/181 (31%), Gaps = 11/181 (6%)

Query: 7   LALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRVLQH 66
           L    +   +  S          P     D         +     W      GK  +L +
Sbjct: 22  LMKAWIAGALSISLAAGSALGAAPAPEPVDATLRTSAGKEVRLSKWR-----GKPVILFY 76

Query: 67  IAGRTSAKEKNATLIEAIKSAKLPHDRYQTT---TIVNTDDAIPGS-GMFVRSSLESNKK 122
                 + + N+TL + + +               + N  +           S +   +K
Sbjct: 77  --EDKDSTKLNSTLKKELFARGQERGILDAAWVLAVANLQNFDFFPARQIALSFVRDEEK 134

Query: 123 LYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKL 182
                  +     +    W+L  ++S +V+LD +G + +   G + P+E+     +L +L
Sbjct: 135 KVGVPILVDMDGALGKAPWKLPLKTSNIVLLDAEGALVYRHSGRMKPDELMTFFAVLSRL 194

Query: 183 L 183
           +
Sbjct: 195 V 195


>UniRef50_P24508 Sucrose operon repressor n=1 Tax=Vibrio alginolyticus
           RepID=SCRR_VIBAL
          Length = 94

 Score = 52.4 bits (124), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 32/42 (76%)

Query: 142 QLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLL 183
            L EESSA++V DK G+V + K+GAL  +E+ +V++L+++ +
Sbjct: 53  DLKEESSAIIVQDKTGKVLFVKEGALEQDEIAKVIELIKQNI 94


>UniRef50_C8TCQ6 Transcriptional regulator YtfJ n=1 Tax=Klebsiella pneumoniae
          subsp. rhinoscleromatis ATCC 13884 RepID=C8TCQ6_KLEPR
          Length = 79

 Score = 45.5 bits (106), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/51 (68%), Positives = 43/51 (84%)

Query: 1  MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKT 51
          MTLR ILA + LLLP++A+AH F  GQRV P+G+ DRGEL+LDKD+FSYKT
Sbjct: 1  MTLRSILAASLLLLPLLATAHNFVDGQRVAPVGVADRGELILDKDKFSYKT 51


>UniRef50_A9WI14 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal
           allergen n=3 Tax=Chloroflexus RepID=A9WI14_CHLAA
          Length = 181

 Score = 44.0 bits (102), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 61/158 (38%), Gaps = 11/158 (6%)

Query: 30  PPIGITDRGELV--LDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSA 87
           P + +   G +   +   Q   +T + ++L G+V ++   A           ++E +   
Sbjct: 32  PTVPVPQPGFVAPAIVLPQLDGQTLSLSELQGQVVIVNFWASWCGPCRAEMPMLEQL--- 88

Query: 88  KLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEES 147
               +R +  T++  +  +  +   V +        +P    ++D +G     + +    
Sbjct: 89  -YQAERRRGLTVLAVNSTVQDNPADVSNMQRDFGLSFP---IVLDYDGSVGNRYGVRMLP 144

Query: 148 SAVVVLDKDGRVQWAKDG-ALTPEEVQQVMDLLQKLLK 184
           +  ++ D+ G V+    G  L+   ++ V++ L    +
Sbjct: 145 TTFII-DRKGVVRRVLFGGPLSEANLRNVIEPLLAETE 181


>UniRef50_C4ZMJ8 Redoxin domain protein n=1 Tax=Thauera sp. MZ1T RepID=C4ZMJ8_THASP
          Length = 165

 Score = 43.6 bits (101), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 11/136 (8%)

Query: 48  SYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIP 107
             +++ +A L GKV ++   A   +   K    ++A +  K     Y+T  +    D   
Sbjct: 37  QGQSFRTADLRGKVVLVNFWATTCTTCIKEMPALKATQE-KFEARGYRTVAVAMDYDPPA 95

Query: 108 GSGMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGAL 167
               FV  S        P+  F++D +G     ++    +    VLDK GR+     G  
Sbjct: 96  QVAAFVERSA------LPF-TFVLDRDGSIARGFEGVRLTPTSYVLDKHGRIVQKILGEP 148

Query: 168 TPEEVQQVMDLLQKLL 183
              +  ++  LL++LL
Sbjct: 149 ---DFDKLHGLLEQLL 161


>UniRef50_A9I0L2 Predicted thioredoxin n=6 Tax=Betaproteobacteria RepID=A9I0L2_BORPD
          Length = 164

 Score = 43.2 bits (100), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 20/176 (11%)

Query: 3   LRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVR 62
            + IL L  ++   + +   +      P +  T              KT++   L GKV 
Sbjct: 2   KKLILTLAVVVAAGIGAWFVWRPAPPAPDVAFT----------TIEGKTFSMHDLRGKVV 51

Query: 63  VLQHIAGRTSAKEKNATLIEAIKS-AKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121
           +++  A  TS       +  AI +  +     Y+T  +            +V +  E+ K
Sbjct: 52  LVKFWA--TSCVTCVKQMPGAIDTYNEYAPKGYETVAV----AMSYDPPNYVLNFAETRK 105

Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMD 177
             +P +   +D  G    ++   + +    ++DK GR+     G   P E    ++
Sbjct: 106 LPFPVA---LDVKGELARSFGDVKLTPTAFLIDKQGRIIKRYLGEYDPAEFHAAIE 158


>UniRef50_C6AMB8 ResA n=6 Tax=Pasteurellaceae RepID=C6AMB8_AGGAN
          Length = 167

 Score = 42.8 bits (99), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 65/176 (36%), Gaps = 22/176 (12%)

Query: 3   LRKILALTCLLLPMMA-SAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61
           L K+L ++ ++   ++      + GQ  P I         L  ++ S   W      GK 
Sbjct: 9   LAKMLGISAVVFFSVSCKEESAQIGQPAPEIAA-----FDLQGNKASLSDW-----QGKT 58

Query: 62  RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121
            ++   +    A    A L    + A+   ++ Q    +N D     +   V       K
Sbjct: 59  VLINFWSETCGA--CIAELRTLQQWAEKYPNQVQLIA-MNIDGEKADTQAIV------TK 109

Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMD 177
           +      F  D   +    +QL   +    V+D +G+V +  +G ++  ++Q++  
Sbjct: 110 RQLTLPVF-KDQMKITAERYQL-IGTPTSFVIDPNGKVIYKFEGLISENDLQRLFQ 163


>UniRef50_Q0AXB8 Sensor protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str.
           Goettingen RepID=Q0AXB8_SYNWW
          Length = 763

 Score = 42.0 bits (97), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 53/141 (37%), Gaps = 10/141 (7%)

Query: 52  WNSAQLVGK-VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSG 110
           W+  + +GK +  +  I   TS +       + + +  L     + + +++ D     + 
Sbjct: 56  WSREEALGKHLYEVFRIIDNTSKQPLENPF-DNVFTRGLSQGLLRNSALLDRDGETRFAS 114

Query: 111 MFVRSSLESNKKLYPWSQFIVDSNGVALG-------AWQLDEESSAVVVLDKDGRVQWAK 163
                 ++ N+K         D + +          +W L   S+A+++ D  G VQ+  
Sbjct: 115 ACASPIIDKNQKRAGMVVVFRDIDRIKKNEDEIRCLSWVLQLSSNAIIIFDIQGIVQFIN 174

Query: 164 DGALTPEEVQQVMDLLQKLLK 184
               T     +  +++ + L+
Sbjct: 175 S-RFTQLTGYEAYEVVNRNLR 194


>UniRef50_B3U4I8 Putative thioredoxin n=1 Tax=Candidatus Nitrospira defluvii
           RepID=B3U4I8_9BACT
          Length = 181

 Score = 40.9 bits (94), Expect = 0.019,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 28/189 (14%)

Query: 3   LRKILALTCLLLPMMASAHQ-----FETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQL 57
            R ++A+  +L+ + A  H      F+ G+  P   +T      +  D  S       QL
Sbjct: 2   KRVLIAVAIVLVHLWAVHHVVAAGFFKVGEPAPAFSLT-----SVTGDAVSL-----EQL 51

Query: 58  VGKVRVL--QHIAGRTSAKEKN-ATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVR 114
            GKV VL   HI      +  N   + EA+    +         + ++ D+  G G F+ 
Sbjct: 52  KGKVVVLGLFHICDPCMTQGTNLQKVHEAMAGKNV-----AVVGVNSSGDSKRGVGEFLS 106

Query: 115 SSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQ 174
           +        YP   +++D N      +   +    V V+D+ G ++W + G +     + 
Sbjct: 107 AFPVKVT--YP---YLLDPNKTTDKLYGGGKFIPNVYVIDQRGVIRWQRVGNMELAGAEV 161

Query: 175 VMDLLQKLL 183
           ++  ++KLL
Sbjct: 162 IIQEVEKLL 170


>UniRef50_Q020C0 Putative uncharacterized protein n=1 Tax=Candidatus Solibacter
           usitatus Ellin6076 RepID=Q020C0_SOLUE
          Length = 171

 Score = 40.5 bits (93), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 91  HDRYQTTTIVNTDDAIPGSGMFVRSSLESN--KKLYPWSQFIVDSNGVALGAWQL-DEES 147
            DR+   +I   +D        V+  ++S   K+LY     +         A      + 
Sbjct: 78  RDRFPVWSIAVLEDVPGLVRGMVKHGIKSGTPKELYDHFLLVYHGEKQLKQAAGFDKPDD 137

Query: 148 SAVVVLDKDGRVQWAKDGALTPEEVQQV 175
           + ++ +DK G + W   G +T   V+QV
Sbjct: 138 AYLLAIDKGGVITWRYHGPVTDAAVEQV 165


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.310    0.129    0.307 

Lambda     K      H
   0.267   0.0395    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 781,673,081
Number of Sequences: 3077464
Number of extensions: 24045569
Number of successful extensions: 81103
Number of sequences better than 1.0e-01: 26
Number of HSP's better than  0.1 without gapping: 52
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 81019
Number of HSP's gapped (non-prelim): 63
length of query: 184
length of database: 1,040,396,356
effective HSP length: 121
effective length of query: 63
effective length of database: 668,023,212
effective search space: 42085462356
effective search space used: 42085462356
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 89 (38.9 bits)
