BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (184 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P39187 Uncharacterized protein ytfJ n=198 Tax=Gammaprot...   231   8e-60
UniRef50_C3NV58 Protein YtfJ n=54 Tax=Gammaproteobacteria RepID=...   224   1e-57
UniRef50_C6CAS8 Putative uncharacterized protein n=1 Tax=Dickeya...   221   8e-57
UniRef50_Q5E822 Predicted transcriptional regulator n=21 Tax=Vib...   214   1e-54
UniRef50_P44478 Uncharacterized protein HI0045 n=25 Tax=Pasteure...   213   2e-54
UniRef50_C9PS15 Transcriptional regulator YtfJ n=2 Tax=Gammaprot...   213   2e-54
UniRef50_A6FG85 Putative uncharacterized protein n=1 Tax=Moritel...   206   2e-52
UniRef50_B7RUM8 Putative uncharacterized protein n=1 Tax=marine ...   200   1e-50
UniRef50_A0YEF3 Putative uncharacterized protein n=1 Tax=marine ...   188   6e-47
UniRef50_A0Z1Q9 Predicted transcriptional regulator n=1 Tax=mari...   178   8e-44
UniRef50_A6Q2B2 Transcriptional regulator n=1 Tax=Nitratiruptor ...   162   5e-39
UniRef50_A6QB01 Transcriptional regulator n=1 Tax=Sulfurovum sp....   151   1e-35
UniRef50_A4P185 Putative uncharacterized protein n=2 Tax=Haemoph...   148   7e-35
UniRef50_B0MXT5 Putative uncharacterized protein n=1 Tax=Alistip...   132   5e-30
UniRef50_A9GVB8 Putative uncharacterized protein n=1 Tax=Sorangi...   119   5e-26
UniRef50_Q09AT1 Putative uncharacterized protein n=1 Tax=Stigmat...   104   1e-21
UniRef50_Q1DDW9 Putative uncharacterized protein n=1 Tax=Myxococ...    90   3e-17
UniRef50_P24508 Sucrose operon repressor n=1 Tax=Vibrio alginoly...    52   6e-06
UniRef50_C8TCQ6 Transcriptional regulator YtfJ n=1 Tax=Klebsiell...    45   8e-04
UniRef50_A9WI14 Alkyl hydroperoxide reductase/ Thiol specific an...    44   0.003
UniRef50_C4ZMJ8 Redoxin domain protein n=1 Tax=Thauera sp. MZ1T ...    44   0.004
UniRef50_A9I0L2 Predicted thioredoxin n=6 Tax=Betaproteobacteria...    43   0.004
UniRef50_C6AMB8 ResA n=6 Tax=Pasteurellaceae RepID=C6AMB8_AGGAN        43   0.005
UniRef50_Q0AXB8 Sensor protein n=1 Tax=Syntrophomonas wolfei sub...    42   0.009
UniRef50_B3U4I8 Putative thioredoxin n=1 Tax=Candidatus Nitrospi...    41   0.019
UniRef50_Q020C0 Putative uncharacterized protein n=1 Tax=Candida...    40   0.026

>UniRef50_P39187 Uncharacterized protein ytfJ n=198 Tax=Gammaproteobacteria
           RepID=YTFJ_ECOLI
          Length = 184

 Score =  231 bits (589), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 184/184 (100%), Positives = 184/184 (100%)

Query: 1   MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60
           MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK
Sbjct: 1   MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60

Query: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120
           VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN
Sbjct: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120

Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180
           KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ
Sbjct: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180

Query: 181 KLLK 184
           KLLK
Sbjct: 181 KLLK 184


>UniRef50_C3NV58 Protein YtfJ n=54 Tax=Gammaproteobacteria RepID=C3NV58_VIBCJ
          Length = 183

 Score =  224 bits (570), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 86/183 (46%), Positives = 121/183 (66%)

Query: 1   MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60
           M  + ++AL     P +A AH    G  VP +G+   GE+VL  +  +Y+ W SA L+GK
Sbjct: 1   MKNKTLIALLLACSPTLAFAHNLTVGSPVPAVGVEKHGEIVLQDNNINYQKWRSADLLGK 60

Query: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120
           VRV+Q IAGR+S+KE NA L+ AI +AK P + YQTTTI+N DDAI G+  FV+SS + +
Sbjct: 61  VRVIQAIAGRSSSKEMNAPLMAAITAAKFPAESYQTTTIINQDDAIWGTSSFVKSSAQDS 120

Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180
           KK +PWS  ++D  G+   AWQL  ESSA++V DK G V + K+GAL   ++Q V+ L+Q
Sbjct: 121 KKEFPWSSMVLDEFGLVAQAWQLQAESSAIIVQDKQGNVLFVKEGALNEADIQTVLGLIQ 180

Query: 181 KLL 183
           + L
Sbjct: 181 QNL 183


>UniRef50_C6CAS8 Putative uncharacterized protein n=1 Tax=Dickeya dadantii Ech703
           RepID=C6CAS8_DICDC
          Length = 201

 Score =  221 bits (563), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 91/185 (49%), Positives = 127/185 (68%), Gaps = 2/185 (1%)

Query: 1   MTLRKILALTCLL--LPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLV 58
           MT R  L    +L   P    AH     + +P + ++D GEL     +  Y +W+SAQLV
Sbjct: 1   MTRRACLLTIWVLLIFPRWLPAHILPLYRMLPDVVVSDGGELQYQDGKPHYLSWSSAQLV 60

Query: 59  GKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLE 118
           GKVR++QHIAGR SA+  N TL+ A+K+A LP + YQTTTIVN D+A+ G+G FVR  +E
Sbjct: 61  GKVRLIQHIAGRMSARNMNETLMTALKAANLPREYYQTTTIVNADEAVIGTGFFVRKRIE 120

Query: 119 SNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDL 178
           + K  YPW+QF++D+ G    AWQL  +S+AV+VLDK+GR+++ KDG+L  +EVQQV++L
Sbjct: 121 AGKTQYPWTQFVLDNQGEVRKAWQLTPKSAAVIVLDKEGRIRYVKDGSLNRQEVQQVVNL 180

Query: 179 LQKLL 183
           LQ LL
Sbjct: 181 LQVLL 185


>UniRef50_Q5E822 Predicted transcriptional regulator n=21 Tax=Vibrionales
           RepID=Q5E822_VIBF1
          Length = 183

 Score =  214 bits (544), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 81/183 (44%), Positives = 115/183 (62%)

Query: 1   MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60
           M   K+L L   LLP ++ AH     + VP + I   GE+       +Y+ WN+ QL GK
Sbjct: 1   MKKVKLLTLAACLLPSLSFAHNLTLNKEVPSVSIEQYGEIFFKNSAATYQNWNTEQLKGK 60

Query: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120
           VRVLQ IAGR+SAK  NA L+ AI   K P   YQTTTI+N DD+I G+G FV+SS E +
Sbjct: 61  VRVLQAIAGRSSAKAMNADLMSAITLEKFPETEYQTTTIINQDDSIWGTGGFVKSSAEES 120

Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180
           K+ + WS  ++D +G    AW L  ESSA++V DK+G++ + K+G L+ +E++QV+ L+ 
Sbjct: 121 KEEFSWSSMVLDEHGKVAKAWDLQPESSAIIVQDKEGKILFVKEGKLSNDEIKQVIALIH 180

Query: 181 KLL 183
             L
Sbjct: 181 TQL 183


>UniRef50_P44478 Uncharacterized protein HI0045 n=25 Tax=Pasteurellaceae
           RepID=Y045_HAEIN
          Length = 184

 Score =  213 bits (542), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/183 (40%), Positives = 118/183 (64%), Gaps = 1/183 (0%)

Query: 3   LRKILALTC-LLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61
            ++ILAL C ++      AH  +  Q +P + +++ GE+VL      ++ W SA+L GKV
Sbjct: 2   KKQILALVCGVIFSSSTWAHNLQLEQSLPSVKVSEYGEIVLSGKDTVFQPWGSAELAGKV 61

Query: 62  RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121
           RV+ H+AGRT+AKE N ++I+ IK++     +YQTTTI+N DDAI G+GMFV++  +  K
Sbjct: 62  RVVHHLAGRTAAKEXNQSMIDVIKASHFNPVKYQTTTIINADDAIVGTGMFVKNGAKKGK 121

Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181
           +  P SQ ++D       AW L+ + SA++VLDK G+V++ K+G L+  ++Q V+ L+  
Sbjct: 122 QENPHSQVVLDDKSAVKNAWGLNSKDSAIIVLDKTGKVKFVKEGKLSDSDIQTVISLVNG 181

Query: 182 LLK 184
           L K
Sbjct: 182 LTK 184


>UniRef50_C9PS15 Transcriptional regulator YtfJ n=2 Tax=Gammaproteobacteria
           RepID=C9PS15_9PAST
          Length = 191

 Score =  213 bits (542), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/179 (43%), Positives = 112/179 (62%)

Query: 6   ILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRVLQ 65
           +L L  +       AH  +    + P+ + + GEL +  D  SYK W+S QLVGKVR++ 
Sbjct: 13  VLGLAAVFCSTGLFAHNIQLNSPLAPVSVEEDGELSVKGDDVSYKAWSSVQLVGKVRIVN 72

Query: 66  HIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKLYP 125
           H AGR   K++N TLI AIK+A+    +YQTTTI+N DDA  G+G FV+S  E  KK  P
Sbjct: 73  HFAGRRDVKDRNETLINAIKAAQFDRSKYQTTTIINADDATFGTGSFVKSGAEKGKKKNP 132

Query: 126 WSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLLK 184
            SQ ++D  G    AWQL E+ + V+VLDK G+V++  +GAL+  +VQ+V+ L+ +L K
Sbjct: 133 HSQVVLDQRGAVKNAWQLKEKENLVIVLDKSGKVKFVHEGALSGAQVQEVISLITELTK 191


>UniRef50_A6FG85 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36
           RepID=A6FG85_9GAMM
          Length = 182

 Score =  206 bits (525), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/182 (39%), Positives = 118/182 (64%), Gaps = 1/182 (0%)

Query: 3   LRKILALTCL-LLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61
           ++KIL +  L L   +A +H    G+ +P + ITD+G + L +  F Y+ W SA+L  KV
Sbjct: 1   MKKILTVIALSLTSFVALSHSLTVGENLPQVTITDKGYVDLVEGDFEYRQWTSAELQNKV 60

Query: 62  RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121
            ++QHIAGRTSAKE N  +I+A+ +A  P ++Y T T+VN D++I G+G  V S ++SNK
Sbjct: 61  ILIQHIAGRTSAKELNDPMIDAVIAADFPFEKYNTATLVNLDESIWGTGAIVASQVKSNK 120

Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181
           + +P + F++DS G     W L E+SSA+++LD+ G++ + KDG + P E+  V+ ++  
Sbjct: 121 EEFPDAIFVLDSEGAMRKTWALTEKSSAIILLDQAGKILYVKDGEMNPTEIDTVIGIINA 180

Query: 182 LL 183
            +
Sbjct: 181 NI 182


>UniRef50_B7RUM8 Putative uncharacterized protein n=1 Tax=marine gamma
           proteobacterium HTCC2148 RepID=B7RUM8_9GAMM
          Length = 186

 Score =  200 bits (509), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 2/183 (1%)

Query: 2   TLRKILALTCLLLPMMASAH-QFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60
           T++ + +L  L L  +++A      G+ +PP+ I+  GE++LD D   Y+ WNS   V K
Sbjct: 3   TVKTLTSLAGLFLLSLSTASFAATVGEPLPPLAISQPGEIMLDGDGIGYQPWNSQNTVDK 62

Query: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120
           V V+Q+I    SA +      + ++        +  TT+++ D A+ G+   V S +E N
Sbjct: 63  VHVVQYIPATMSASKMYRPFTDYLEE-NYDPSHFHVTTVIDLDAALWGTSGLVSSEVEKN 121

Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180
           K+ YP S  ++D  G  +G W L +  S + ++D+ G V +A    +   E +   ++  
Sbjct: 122 KRKYPLSTLVLDKTGSGIGTWSLGKNGSGLFIVDETGIVHFAIRHKMDATEQRDAEEVFS 181

Query: 181 KLL 183
            L+
Sbjct: 182 TLV 184


>UniRef50_A0YEF3 Putative uncharacterized protein n=1 Tax=marine gamma
           proteobacterium HTCC2143 RepID=A0YEF3_9GAMM
          Length = 185

 Score =  188 bits (478), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 5/183 (2%)

Query: 6   ILALTCLLLPMMASAHQFETGQ----RVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61
           I  L C +     S   F  G      +P + I DRGEL+++K  FS++ W++    GKV
Sbjct: 3   IQQLVCGVFLAFISTLAFAQGPLVDSPLPALTIADRGELLMEKGDFSFRPWSTEHNPGKV 62

Query: 62  RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121
            ++Q+     S  E      + ++ + L   +Y  TTIVN D A+ G+  FV S L+SNK
Sbjct: 63  HIVQYFGATKSDSELFKPFTDLLQDS-LGVGKYHVTTIVNLDAAVWGTSSFVISELKSNK 121

Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181
           + YP S  ++D  G  +G W+L EE + + ++D++G V++     +T  E+   +DL++ 
Sbjct: 122 RKYPLSTIVLDQEGSGIGRWKLGEEGAGLAIIDQEGVVRYFTKTPMTDAEMDASLDLVKA 181

Query: 182 LLK 184
            + 
Sbjct: 182 RVD 184


>UniRef50_A0Z1Q9 Predicted transcriptional regulator n=1 Tax=marine gamma
           proteobacterium HTCC2080 RepID=A0Z1Q9_9GAMM
          Length = 181

 Score =  178 bits (451), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 92/180 (51%), Gaps = 5/180 (2%)

Query: 7   LALTCLLLPMMASAH---QFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRV 63
           + L    LP  A A+       G+ +PP+ IT+ G+++LD D +S   W+      KV+V
Sbjct: 1   MGLLLWSLPGYAEANATANLILGEPLPPVTITEGGQVILDGDGYSLAPWSWPGSSNKVQV 60

Query: 64  LQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKL 123
           LQ++AG     +    + E ++  +L  DRY  T +VN +        FVRS++   +++
Sbjct: 61  LQYVAGTRKGGDLYDPMTERMR-RELDFDRYDITAVVNLEVTSAFVKPFVRSAVVDEQRI 119

Query: 124 YPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLL 183
           +  +  ++D  G+    W L ++ +A VV+D+ G V     GA +  + ++   +L+ L+
Sbjct: 120 FTRATLVLDERGIGQATWNLTQQ-AAFVVVDRKGLVVDVILGAPSEADFERSFQVLRDLI 178


>UniRef50_A6Q2B2 Transcriptional regulator n=1 Tax=Nitratiruptor sp. SB155-2
           RepID=A6Q2B2_NITSB
          Length = 173

 Score =  162 bits (410), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 87/181 (48%), Gaps = 12/181 (6%)

Query: 3   LRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVR 62
           ++K+  L+ +   +MA     E G     + +                 +++A + GKV 
Sbjct: 1   MKKVFMLSIIACFLMA----LEIGTIPKRVVLEKD-----KGGTIDGSPFDTASMKGKVY 51

Query: 63  VLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKK 122
           ++  I      ++ N    E +K+     +RY +  I+N   A       + + L++ +K
Sbjct: 52  LV--IYSDPDKRDLNEPFFEKVKAKNFDRNRYTSIAIINM-AATWIPNFLLNAILKAKQK 108

Query: 123 LYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKL 182
            YP++ ++ D+  V + AWQL +    V++ D++GRVQ+   G L+ +E ++ + +L++L
Sbjct: 109 KYPYTVYVKDNKKVLVHAWQLPDNDQVVMIFDQNGRVQYIGHGKLSQKEQERALHILEEL 168

Query: 183 L 183
           +
Sbjct: 169 I 169


>UniRef50_A6QB01 Transcriptional regulator n=1 Tax=Sulfurovum sp. NBC37-1
           RepID=A6QB01_SULNB
          Length = 170

 Score =  151 bits (381), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 93/181 (51%), Gaps = 11/181 (6%)

Query: 3   LRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVR 62
           ++KI+ L CLL  +  S+   E G+  P + ++          +     W+S+ L GKV 
Sbjct: 1   MKKII-LGCLLTAV--SSMAIELGKVPPSVELSGAS-----GGKVDGTAWSSSMLKGKVH 52

Query: 63  VLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKK 122
           +L ++      ++ N  L +A+K       +Y +  ++N   A     + + S L++ +K
Sbjct: 53  ILFYV--DPDERDLNKALTQALKKRHFDRKKYASVAVINL-AATWLPNVILESKLKAKQK 109

Query: 123 LYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKL 182
            +P + ++ D   V L  W L +++S +++ DK G++ + K G L+ +E++ V+ L++K 
Sbjct: 110 EFPDTIYVKDKKKVVLKKWDLADDNSDILIFDKSGKLIYKKFGKLSDKEIKSVLALIEKN 169

Query: 183 L 183
           L
Sbjct: 170 L 170


>UniRef50_A4P185 Putative uncharacterized protein n=2 Tax=Haemophilus influenzae
           RepID=A4P185_HAEIN
          Length = 130

 Score =  148 bits (374), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 52/129 (40%), Positives = 83/129 (64%), Gaps = 1/129 (0%)

Query: 3   LRKILALTC-LLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61
            ++ILAL C ++      AH  +  Q +P + +T+ GE+VL     +++ W SA+L GKV
Sbjct: 2   KKQILALVCGVMFSSSTWAHNLQLEQSLPAVQVTEYGEIVLSGKDTAFQPWGSAELAGKV 61

Query: 62  RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121
           RV+ H+AGRT+AKEKN ++I+ IK++     +YQTTTI+N DDAI G+GMFV++  +   
Sbjct: 62  RVVHHLAGRTAAKEKNQSMIDVIKASHFNPVKYQTTTIINADDAIVGTGMFVKNGAKKAN 121

Query: 122 KLYPWSQFI 130
           +    ++  
Sbjct: 122 RKIHIAKLC 130


>UniRef50_B0MXT5 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM
           17216 RepID=B0MXT5_9BACT
          Length = 173

 Score =  132 bits (332), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 59/154 (38%), Gaps = 11/154 (7%)

Query: 31  PIGITDRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAK-L 89
           P  ++D   L L+ D      W    L     ++ +I       ++N      ++    +
Sbjct: 26  PRKVSDVTLLDLNGDPTQLPYWGEKNL-----MIFYI--DPDHHKQNEDFTTDMEENHRV 78

Query: 90  PHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESS- 148
             +      ++N  DA        R+           +  + D N     AWQL + ++ 
Sbjct: 79  EGENLFGFGVMNLKDAPMIPNGMARNMARKRTASNG-ATVLADQNNTLRDAWQLGDCNNM 137

Query: 149 -AVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181
             ++++ K+G + + + G L+  + ++   ++QK
Sbjct: 138 FVLLLVSKEGDLVFMRKGPLSDADKKEFYQVVQK 171


>UniRef50_A9GVB8 Putative uncharacterized protein n=1 Tax=Sorangium cellulosum 'So
           ce 56' RepID=A9GVB8_SORC5
          Length = 193

 Score =  119 bits (298), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 7/144 (4%)

Query: 45  DQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAI-KSAKLPHDRYQTTTIVNTD 103
           +    +      L GK  ++  +     +K +N  L +A+ K  K    R         D
Sbjct: 52  EDADGRALQLKALQGKPILI--VYEDKDSKTQNQALKDALAKLTKGDRYRRGIAVAAIAD 109

Query: 104 DAI---PGSGMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQ 160
            +      +  FV+ ++    K    + +  D +G    A++L    S VVV+ K+G V 
Sbjct: 110 VSSYDFWPARGFVKDAIREESKKVGGTIYC-DWDGSFRAAYKLRRGVSNVVVVGKNGHVL 168

Query: 161 WAKDGALTPEEVQQVMDLLQKLLK 184
           +A +GAL PE   +V++LL+K ++
Sbjct: 169 FAAEGALKPESQSRVLELLRKEVE 192


>UniRef50_Q09AT1 Putative uncharacterized protein n=1 Tax=Stigmatella aurantiaca
           DW4/3-1 RepID=Q09AT1_STIAU
          Length = 156

 Score =  104 bits (260), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 51/145 (35%), Gaps = 11/145 (7%)

Query: 43  DKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQT---TTI 99
           +        W      GK  +L +      +   NA L E +           +     +
Sbjct: 9   EGTPVQLSRWR-----GKPVILFY--EDKDSVNLNAKLKERLFELARERGLKDSAWVIAV 61

Query: 100 VNTDDAIPGS-GMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGR 158
            N +            S ++  +K       +     +    W+L  ++S V++LD +G 
Sbjct: 62  ANLEKFNFFPARQIALSYVKDEEKKAGVPILVDLEGTLGAEPWKLPMKTSTVMLLDAEGI 121

Query: 159 VQWAKDGALTPEEVQQVMDLLQKLL 183
           + +   G +  ++++  + LL +L+
Sbjct: 122 LLYRYSGRMAEKDMELFIALLARLV 146


>UniRef50_Q1DDW9 Putative uncharacterized protein n=1 Tax=Myxococcus xanthus DK 1622
           RepID=Q1DDW9_MYXXD
          Length = 209

 Score = 90.2 bits (222), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 57/181 (31%), Gaps = 11/181 (6%)

Query: 7   LALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRVLQH 66
           L    +   +  S          P     D         +     W      GK  +L +
Sbjct: 22  LMKAWIAGALSISLAAGSALGAAPAPEPVDATLRTSAGKEVRLSKWR-----GKPVILFY 76

Query: 67  IAGRTSAKEKNATLIEAIKSAKLPHDRYQTT---TIVNTDDAIPGS-GMFVRSSLESNKK 122
                 + + N+TL + + +               + N  +           S +   +K
Sbjct: 77  --EDKDSTKLNSTLKKELFARGQERGILDAAWVLAVANLQNFDFFPARQIALSFVRDEEK 134

Query: 123 LYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKL 182
                  +     +    W+L  ++S +V+LD +G + +   G + P+E+     +L +L
Sbjct: 135 KVGVPILVDMDGALGKAPWKLPLKTSNIVLLDAEGALVYRHSGRMKPDELMTFFAVLSRL 194

Query: 183 L 183
           +
Sbjct: 195 V 195


>UniRef50_P24508 Sucrose operon repressor n=1 Tax=Vibrio alginolyticus
           RepID=SCRR_VIBAL
          Length = 94

 Score = 52.4 bits (124), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 32/42 (76%)

Query: 142 QLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLL 183
            L EESSA++V DK G+V + K+GAL  +E+ +V++L+++ +
Sbjct: 53  DLKEESSAIIVQDKTGKVLFVKEGALEQDEIAKVIELIKQNI 94


>UniRef50_C8TCQ6 Transcriptional regulator YtfJ n=1 Tax=Klebsiella pneumoniae
          subsp. rhinoscleromatis ATCC 13884 RepID=C8TCQ6_KLEPR
          Length = 79

 Score = 45.5 bits (106), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/51 (68%), Positives = 43/51 (84%)

Query: 1  MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKT 51
          MTLR ILA + LLLP++A+AH F  GQRV P+G+ DRGEL+LDKD+FSYKT
Sbjct: 1  MTLRSILAASLLLLPLLATAHNFVDGQRVAPVGVADRGELILDKDKFSYKT 51


>UniRef50_A9WI14 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal
           allergen n=3 Tax=Chloroflexus RepID=A9WI14_CHLAA
          Length = 181

 Score = 44.0 bits (102), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 61/158 (38%), Gaps = 11/158 (6%)

Query: 30  PPIGITDRGELV--LDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSA 87
           P + +   G +   +   Q   +T + ++L G+V ++   A           ++E +   
Sbjct: 32  PTVPVPQPGFVAPAIVLPQLDGQTLSLSELQGQVVIVNFWASWCGPCRAEMPMLEQL--- 88

Query: 88  KLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEES 147
               +R +  T++  +  +  +   V +        +P    ++D +G     + +    
Sbjct: 89  -YQAERRRGLTVLAVNSTVQDNPADVSNMQRDFGLSFP---IVLDYDGSVGNRYGVRMLP 144

Query: 148 SAVVVLDKDGRVQWAKDG-ALTPEEVQQVMDLLQKLLK 184
           +  ++ D+ G V+    G  L+   ++ V++ L    +
Sbjct: 145 TTFII-DRKGVVRRVLFGGPLSEANLRNVIEPLLAETE 181


>UniRef50_C4ZMJ8 Redoxin domain protein n=1 Tax=Thauera sp. MZ1T RepID=C4ZMJ8_THASP
          Length = 165

 Score = 43.6 bits (101), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 11/136 (8%)

Query: 48  SYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIP 107
             +++ +A L GKV ++   A   +   K    ++A +  K     Y+T  +    D   
Sbjct: 37  QGQSFRTADLRGKVVLVNFWATTCTTCIKEMPALKATQE-KFEARGYRTVAVAMDYDPPA 95

Query: 108 GSGMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGAL 167
               FV  S        P+  F++D +G     ++    +    VLDK GR+     G  
Sbjct: 96  QVAAFVERSA------LPF-TFVLDRDGSIARGFEGVRLTPTSYVLDKHGRIVQKILGEP 148

Query: 168 TPEEVQQVMDLLQKLL 183
              +  ++  LL++LL
Sbjct: 149 ---DFDKLHGLLEQLL 161


>UniRef50_A9I0L2 Predicted thioredoxin n=6 Tax=Betaproteobacteria RepID=A9I0L2_BORPD
          Length = 164

 Score = 43.2 bits (100), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 20/176 (11%)

Query: 3   LRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVR 62
            + IL L  ++   + +   +      P +  T              KT++   L GKV 
Sbjct: 2   KKLILTLAVVVAAGIGAWFVWRPAPPAPDVAFT----------TIEGKTFSMHDLRGKVV 51

Query: 63  VLQHIAGRTSAKEKNATLIEAIKS-AKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121
           +++  A  TS       +  AI +  +     Y+T  +            +V +  E+ K
Sbjct: 52  LVKFWA--TSCVTCVKQMPGAIDTYNEYAPKGYETVAV----AMSYDPPNYVLNFAETRK 105

Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMD 177
             +P +   +D  G    ++   + +    ++DK GR+     G   P E    ++
Sbjct: 106 LPFPVA---LDVKGELARSFGDVKLTPTAFLIDKQGRIIKRYLGEYDPAEFHAAIE 158


>UniRef50_C6AMB8 ResA n=6 Tax=Pasteurellaceae RepID=C6AMB8_AGGAN
          Length = 167

 Score = 42.8 bits (99), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 65/176 (36%), Gaps = 22/176 (12%)

Query: 3   LRKILALTCLLLPMMA-SAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61
           L K+L ++ ++   ++      + GQ  P I         L  ++ S   W      GK 
Sbjct: 9   LAKMLGISAVVFFSVSCKEESAQIGQPAPEIAA-----FDLQGNKASLSDW-----QGKT 58

Query: 62  RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121
            ++   +    A    A L    + A+   ++ Q    +N D     +   V       K
Sbjct: 59  VLINFWSETCGA--CIAELRTLQQWAEKYPNQVQLIA-MNIDGEKADTQAIV------TK 109

Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMD 177
           +      F  D   +    +QL   +    V+D +G+V +  +G ++  ++Q++  
Sbjct: 110 RQLTLPVF-KDQMKITAERYQL-IGTPTSFVIDPNGKVIYKFEGLISENDLQRLFQ 163


>UniRef50_Q0AXB8 Sensor protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str.
           Goettingen RepID=Q0AXB8_SYNWW
          Length = 763

 Score = 42.0 bits (97), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 53/141 (37%), Gaps = 10/141 (7%)

Query: 52  WNSAQLVGK-VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSG 110
           W+  + +GK +  +  I   TS +       + + +  L     + + +++ D     + 
Sbjct: 56  WSREEALGKHLYEVFRIIDNTSKQPLENPF-DNVFTRGLSQGLLRNSALLDRDGETRFAS 114

Query: 111 MFVRSSLESNKKLYPWSQFIVDSNGVALG-------AWQLDEESSAVVVLDKDGRVQWAK 163
                 ++ N+K         D + +          +W L   S+A+++ D  G VQ+  
Sbjct: 115 ACASPIIDKNQKRAGMVVVFRDIDRIKKNEDEIRCLSWVLQLSSNAIIIFDIQGIVQFIN 174

Query: 164 DGALTPEEVQQVMDLLQKLLK 184
               T     +  +++ + L+
Sbjct: 175 S-RFTQLTGYEAYEVVNRNLR 194


>UniRef50_B3U4I8 Putative thioredoxin n=1 Tax=Candidatus Nitrospira defluvii
           RepID=B3U4I8_9BACT
          Length = 181

 Score = 40.9 bits (94), Expect = 0.019,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 28/189 (14%)

Query: 3   LRKILALTCLLLPMMASAHQ-----FETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQL 57
            R ++A+  +L+ + A  H      F+ G+  P   +T      +  D  S       QL
Sbjct: 2   KRVLIAVAIVLVHLWAVHHVVAAGFFKVGEPAPAFSLT-----SVTGDAVSL-----EQL 51

Query: 58  VGKVRVL--QHIAGRTSAKEKN-ATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVR 114
            GKV VL   HI      +  N   + EA+    +         + ++ D+  G G F+ 
Sbjct: 52  KGKVVVLGLFHICDPCMTQGTNLQKVHEAMAGKNV-----AVVGVNSSGDSKRGVGEFLS 106

Query: 115 SSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQ 174
           +        YP   +++D N      +   +    V V+D+ G ++W + G +     + 
Sbjct: 107 AFPVKVT--YP---YLLDPNKTTDKLYGGGKFIPNVYVIDQRGVIRWQRVGNMELAGAEV 161

Query: 175 VMDLLQKLL 183
           ++  ++KLL
Sbjct: 162 IIQEVEKLL 170


>UniRef50_Q020C0 Putative uncharacterized protein n=1 Tax=Candidatus Solibacter
           usitatus Ellin6076 RepID=Q020C0_SOLUE
          Length = 171

 Score = 40.5 bits (93), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 91  HDRYQTTTIVNTDDAIPGSGMFVRSSLESN--KKLYPWSQFIVDSNGVALGAWQL-DEES 147
            DR+   +I   +D        V+  ++S   K+LY     +         A      + 
Sbjct: 78  RDRFPVWSIAVLEDVPGLVRGMVKHGIKSGTPKELYDHFLLVYHGEKQLKQAAGFDKPDD 137

Query: 148 SAVVVLDKDGRVQWAKDGALTPEEVQQV 175
           + ++ +DK G + W   G +T   V+QV
Sbjct: 138 AYLLAIDKGGVITWRYHGPVTDAAVEQV 165


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P39187 Uncharacterized protein ytfJ n=198 Tax=Gammaprot...   227   1e-58
UniRef50_C3NV58 Protein YtfJ n=54 Tax=Gammaproteobacteria RepID=...   223   2e-57
UniRef50_C6CAS8 Putative uncharacterized protein n=1 Tax=Dickeya...   221   1e-56
UniRef50_Q5E822 Predicted transcriptional regulator n=21 Tax=Vib...   214   1e-54
UniRef50_C9PS15 Transcriptional regulator YtfJ n=2 Tax=Gammaprot...   213   3e-54
UniRef50_P44478 Uncharacterized protein HI0045 n=25 Tax=Pasteure...   212   5e-54
UniRef50_A6FG85 Putative uncharacterized protein n=1 Tax=Moritel...   206   4e-52
UniRef50_B7RUM8 Putative uncharacterized protein n=1 Tax=marine ...   196   3e-49
UniRef50_A0YEF3 Putative uncharacterized protein n=1 Tax=marine ...   189   4e-47
UniRef50_A0Z1Q9 Predicted transcriptional regulator n=1 Tax=mari...   175   6e-43
UniRef50_A6Q2B2 Transcriptional regulator n=1 Tax=Nitratiruptor ...   168   7e-41
UniRef50_A4P185 Putative uncharacterized protein n=2 Tax=Haemoph...   152   6e-36
UniRef50_A6QB01 Transcriptional regulator n=1 Tax=Sulfurovum sp....   151   1e-35
UniRef50_Q1DDW9 Putative uncharacterized protein n=1 Tax=Myxococ...   138   1e-31
UniRef50_B0MXT5 Putative uncharacterized protein n=1 Tax=Alistip...   130   3e-29
UniRef50_A9GVB8 Putative uncharacterized protein n=1 Tax=Sorangi...   119   5e-26
UniRef50_Q09AT1 Putative uncharacterized protein n=1 Tax=Stigmat...   119   6e-26
UniRef50_P24508 Sucrose operon repressor n=1 Tax=Vibrio alginoly...    52   9e-06

Sequences not found previously or not previously below threshold:

UniRef50_Q0AXB8 Sensor protein n=1 Tax=Syntrophomonas wolfei sub...    45   0.002
UniRef50_A8LCC7 Redoxin domain protein n=2 Tax=Frankia RepID=A8L...    44   0.002
UniRef50_Q67RH4 Cytochrome C biogenesis protein n=1 Tax=Symbioba...    44   0.002
UniRef50_A9I0L2 Predicted thioredoxin n=6 Tax=Betaproteobacteria...    44   0.003
UniRef50_C6AMB8 ResA n=6 Tax=Pasteurellaceae RepID=C6AMB8_AGGAN        43   0.005
UniRef50_C8TCQ6 Transcriptional regulator YtfJ n=1 Tax=Klebsiell...    43   0.006
UniRef50_C4ZMJ8 Redoxin domain protein n=1 Tax=Thauera sp. MZ1T ...    42   0.010
UniRef50_Q1N0M7 Thiol:disulfide interchange protein DsbE, putati...    42   0.012
UniRef50_B3U4I8 Putative thioredoxin n=1 Tax=Candidatus Nitrospi...    40   0.028
UniRef50_Q2RHG0 Peroxiredoxin-like n=1 Tax=Moorella thermoacetic...    40   0.033
UniRef50_A9VTU5 Alkyl hydroperoxide reductase/ Thiol specific an...    39   0.065

>UniRef50_P39187 Uncharacterized protein ytfJ n=198 Tax=Gammaproteobacteria
           RepID=YTFJ_ECOLI
          Length = 184

 Score =  227 bits (579), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 184/184 (100%), Positives = 184/184 (100%)

Query: 1   MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60
           MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK
Sbjct: 1   MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60

Query: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120
           VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN
Sbjct: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120

Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180
           KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ
Sbjct: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180

Query: 181 KLLK 184
           KLLK
Sbjct: 181 KLLK 184


>UniRef50_C3NV58 Protein YtfJ n=54 Tax=Gammaproteobacteria RepID=C3NV58_VIBCJ
          Length = 183

 Score =  223 bits (568), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 86/183 (46%), Positives = 121/183 (66%)

Query: 1   MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60
           M  + ++AL     P +A AH    G  VP +G+   GE+VL  +  +Y+ W SA L+GK
Sbjct: 1   MKNKTLIALLLACSPTLAFAHNLTVGSPVPAVGVEKHGEIVLQDNNINYQKWRSADLLGK 60

Query: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120
           VRV+Q IAGR+S+KE NA L+ AI +AK P + YQTTTI+N DDAI G+  FV+SS + +
Sbjct: 61  VRVIQAIAGRSSSKEMNAPLMAAITAAKFPAESYQTTTIINQDDAIWGTSSFVKSSAQDS 120

Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180
           KK +PWS  ++D  G+   AWQL  ESSA++V DK G V + K+GAL   ++Q V+ L+Q
Sbjct: 121 KKEFPWSSMVLDEFGLVAQAWQLQAESSAIIVQDKQGNVLFVKEGALNEADIQTVLGLIQ 180

Query: 181 KLL 183
           + L
Sbjct: 181 QNL 183


>UniRef50_C6CAS8 Putative uncharacterized protein n=1 Tax=Dickeya dadantii Ech703
           RepID=C6CAS8_DICDC
          Length = 201

 Score =  221 bits (562), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 91/185 (49%), Positives = 127/185 (68%), Gaps = 2/185 (1%)

Query: 1   MTLRKILALTCLL--LPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLV 58
           MT R  L    +L   P    AH     + +P + ++D GEL     +  Y +W+SAQLV
Sbjct: 1   MTRRACLLTIWVLLIFPRWLPAHILPLYRMLPDVVVSDGGELQYQDGKPHYLSWSSAQLV 60

Query: 59  GKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLE 118
           GKVR++QHIAGR SA+  N TL+ A+K+A LP + YQTTTIVN D+A+ G+G FVR  +E
Sbjct: 61  GKVRLIQHIAGRMSARNMNETLMTALKAANLPREYYQTTTIVNADEAVIGTGFFVRKRIE 120

Query: 119 SNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDL 178
           + K  YPW+QF++D+ G    AWQL  +S+AV+VLDK+GR+++ KDG+L  +EVQQV++L
Sbjct: 121 AGKTQYPWTQFVLDNQGEVRKAWQLTPKSAAVIVLDKEGRIRYVKDGSLNRQEVQQVVNL 180

Query: 179 LQKLL 183
           LQ LL
Sbjct: 181 LQVLL 185


>UniRef50_Q5E822 Predicted transcriptional regulator n=21 Tax=Vibrionales
           RepID=Q5E822_VIBF1
          Length = 183

 Score =  214 bits (544), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 81/183 (44%), Positives = 115/183 (62%)

Query: 1   MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60
           M   K+L L   LLP ++ AH     + VP + I   GE+       +Y+ WN+ QL GK
Sbjct: 1   MKKVKLLTLAACLLPSLSFAHNLTLNKEVPSVSIEQYGEIFFKNSAATYQNWNTEQLKGK 60

Query: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120
           VRVLQ IAGR+SAK  NA L+ AI   K P   YQTTTI+N DD+I G+G FV+SS E +
Sbjct: 61  VRVLQAIAGRSSAKAMNADLMSAITLEKFPETEYQTTTIINQDDSIWGTGGFVKSSAEES 120

Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180
           K+ + WS  ++D +G    AW L  ESSA++V DK+G++ + K+G L+ +E++QV+ L+ 
Sbjct: 121 KEEFSWSSMVLDEHGKVAKAWDLQPESSAIIVQDKEGKILFVKEGKLSNDEIKQVIALIH 180

Query: 181 KLL 183
             L
Sbjct: 181 TQL 183


>UniRef50_C9PS15 Transcriptional regulator YtfJ n=2 Tax=Gammaproteobacteria
           RepID=C9PS15_9PAST
          Length = 191

 Score =  213 bits (541), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 78/179 (43%), Positives = 112/179 (62%)

Query: 6   ILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRVLQ 65
           +L L  +       AH  +    + P+ + + GEL +  D  SYK W+S QLVGKVR++ 
Sbjct: 13  VLGLAAVFCSTGLFAHNIQLNSPLAPVSVEEDGELSVKGDDVSYKAWSSVQLVGKVRIVN 72

Query: 66  HIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKLYP 125
           H AGR   K++N TLI AIK+A+    +YQTTTI+N DDA  G+G FV+S  E  KK  P
Sbjct: 73  HFAGRRDVKDRNETLINAIKAAQFDRSKYQTTTIINADDATFGTGSFVKSGAEKGKKKNP 132

Query: 126 WSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLLK 184
            SQ ++D  G    AWQL E+ + V+VLDK G+V++  +GAL+  +VQ+V+ L+ +L K
Sbjct: 133 HSQVVLDQRGAVKNAWQLKEKENLVIVLDKSGKVKFVHEGALSGAQVQEVISLITELTK 191


>UniRef50_P44478 Uncharacterized protein HI0045 n=25 Tax=Pasteurellaceae
           RepID=Y045_HAEIN
          Length = 184

 Score =  212 bits (539), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 74/183 (40%), Positives = 118/183 (64%), Gaps = 1/183 (0%)

Query: 3   LRKILALTC-LLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61
            ++ILAL C ++      AH  +  Q +P + +++ GE+VL      ++ W SA+L GKV
Sbjct: 2   KKQILALVCGVIFSSSTWAHNLQLEQSLPSVKVSEYGEIVLSGKDTVFQPWGSAELAGKV 61

Query: 62  RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121
           RV+ H+AGRT+AKE N ++I+ IK++     +YQTTTI+N DDAI G+GMFV++  +  K
Sbjct: 62  RVVHHLAGRTAAKEXNQSMIDVIKASHFNPVKYQTTTIINADDAIVGTGMFVKNGAKKGK 121

Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181
           +  P SQ ++D       AW L+ + SA++VLDK G+V++ K+G L+  ++Q V+ L+  
Sbjct: 122 QENPHSQVVLDDKSAVKNAWGLNSKDSAIIVLDKTGKVKFVKEGKLSDSDIQTVISLVNG 181

Query: 182 LLK 184
           L K
Sbjct: 182 LTK 184


>UniRef50_A6FG85 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36
           RepID=A6FG85_9GAMM
          Length = 182

 Score =  206 bits (523), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 72/182 (39%), Positives = 118/182 (64%), Gaps = 1/182 (0%)

Query: 3   LRKILALTCL-LLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61
           ++KIL +  L L   +A +H    G+ +P + ITD+G + L +  F Y+ W SA+L  KV
Sbjct: 1   MKKILTVIALSLTSFVALSHSLTVGENLPQVTITDKGYVDLVEGDFEYRQWTSAELQNKV 60

Query: 62  RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121
            ++QHIAGRTSAKE N  +I+A+ +A  P ++Y T T+VN D++I G+G  V S ++SNK
Sbjct: 61  ILIQHIAGRTSAKELNDPMIDAVIAADFPFEKYNTATLVNLDESIWGTGAIVASQVKSNK 120

Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181
           + +P + F++DS G     W L E+SSA+++LD+ G++ + KDG + P E+  V+ ++  
Sbjct: 121 EEFPDAIFVLDSEGAMRKTWALTEKSSAIILLDQAGKILYVKDGEMNPTEIDTVIGIINA 180

Query: 182 LL 183
            +
Sbjct: 181 NI 182


>UniRef50_B7RUM8 Putative uncharacterized protein n=1 Tax=marine gamma
           proteobacterium HTCC2148 RepID=B7RUM8_9GAMM
          Length = 186

 Score =  196 bits (498), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 2/183 (1%)

Query: 2   TLRKILALTCLLLPMMASAH-QFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60
           T++ + +L  L L  +++A      G+ +PP+ I+  GE++LD D   Y+ WNS   V K
Sbjct: 3   TVKTLTSLAGLFLLSLSTASFAATVGEPLPPLAISQPGEIMLDGDGIGYQPWNSQNTVDK 62

Query: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120
           V V+Q+I    SA +      + ++        +  TT+++ D A+ G+   V S +E N
Sbjct: 63  VHVVQYIPATMSASKMYRPFTDYLEE-NYDPSHFHVTTVIDLDAALWGTSGLVSSEVEKN 121

Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180
           K+ YP S  ++D  G  +G W L +  S + ++D+ G V +A    +   E +   ++  
Sbjct: 122 KRKYPLSTLVLDKTGSGIGTWSLGKNGSGLFIVDETGIVHFAIRHKMDATEQRDAEEVFS 181

Query: 181 KLL 183
            L+
Sbjct: 182 TLV 184


>UniRef50_A0YEF3 Putative uncharacterized protein n=1 Tax=marine gamma
           proteobacterium HTCC2143 RepID=A0YEF3_9GAMM
          Length = 185

 Score =  189 bits (479), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 5/183 (2%)

Query: 6   ILALTCLLLPMMASAHQFETGQ----RVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61
           I  L C +     S   F  G      +P + I DRGEL+++K  FS++ W++    GKV
Sbjct: 3   IQQLVCGVFLAFISTLAFAQGPLVDSPLPALTIADRGELLMEKGDFSFRPWSTEHNPGKV 62

Query: 62  RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121
            ++Q+     S  E      + ++ + L   +Y  TTIVN D A+ G+  FV S L+SNK
Sbjct: 63  HIVQYFGATKSDSELFKPFTDLLQDS-LGVGKYHVTTIVNLDAAVWGTSSFVISELKSNK 121

Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181
           + YP S  ++D  G  +G W+L EE + + ++D++G V++     +T  E+   +DL++ 
Sbjct: 122 RKYPLSTIVLDQEGSGIGRWKLGEEGAGLAIIDQEGVVRYFTKTPMTDAEMDASLDLVKA 181

Query: 182 LLK 184
            + 
Sbjct: 182 RVD 184


>UniRef50_A0Z1Q9 Predicted transcriptional regulator n=1 Tax=marine gamma
           proteobacterium HTCC2080 RepID=A0Z1Q9_9GAMM
          Length = 181

 Score =  175 bits (444), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 92/180 (51%), Gaps = 5/180 (2%)

Query: 7   LALTCLLLPMMASAH---QFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRV 63
           + L    LP  A A+       G+ +PP+ IT+ G+++LD D +S   W+      KV+V
Sbjct: 1   MGLLLWSLPGYAEANATANLILGEPLPPVTITEGGQVILDGDGYSLAPWSWPGSSNKVQV 60

Query: 64  LQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKL 123
           LQ++AG     +    + E ++  +L  DRY  T +VN +        FVRS++   +++
Sbjct: 61  LQYVAGTRKGGDLYDPMTERMR-RELDFDRYDITAVVNLEVTSAFVKPFVRSAVVDEQRI 119

Query: 124 YPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLL 183
           +  +  ++D  G+    W L ++ +A VV+D+ G V     GA +  + ++   +L+ L+
Sbjct: 120 FTRATLVLDERGIGQATWNLTQQ-AAFVVVDRKGLVVDVILGAPSEADFERSFQVLRDLI 178


>UniRef50_A6Q2B2 Transcriptional regulator n=1 Tax=Nitratiruptor sp. SB155-2
           RepID=A6Q2B2_NITSB
          Length = 173

 Score =  168 bits (426), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 87/182 (47%), Gaps = 12/182 (6%)

Query: 3   LRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVR 62
           ++K+  L+ +   +MA     E G     + +                 +++A + GKV 
Sbjct: 1   MKKVFMLSIIACFLMA----LEIGTIPKRVVLEKD-----KGGTIDGSPFDTASMKGKVY 51

Query: 63  VLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKK 122
           ++  I      ++ N    E +K+     +RY +  I+N   A       + + L++ +K
Sbjct: 52  LV--IYSDPDKRDLNEPFFEKVKAKNFDRNRYTSIAIINM-AATWIPNFLLNAILKAKQK 108

Query: 123 LYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKL 182
            YP++ ++ D+  V + AWQL +    V++ D++GRVQ+   G L+ +E ++ + +L++L
Sbjct: 109 KYPYTVYVKDNKKVLVHAWQLPDNDQVVMIFDQNGRVQYIGHGKLSQKEQERALHILEEL 168

Query: 183 LK 184
           + 
Sbjct: 169 IN 170


>UniRef50_A4P185 Putative uncharacterized protein n=2 Tax=Haemophilus influenzae
           RepID=A4P185_HAEIN
          Length = 130

 Score =  152 bits (383), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 52/129 (40%), Positives = 83/129 (64%), Gaps = 1/129 (0%)

Query: 3   LRKILALTC-LLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61
            ++ILAL C ++      AH  +  Q +P + +T+ GE+VL     +++ W SA+L GKV
Sbjct: 2   KKQILALVCGVMFSSSTWAHNLQLEQSLPAVQVTEYGEIVLSGKDTAFQPWGSAELAGKV 61

Query: 62  RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121
           RV+ H+AGRT+AKEKN ++I+ IK++     +YQTTTI+N DDAI G+GMFV++  +   
Sbjct: 62  RVVHHLAGRTAAKEKNQSMIDVIKASHFNPVKYQTTTIINADDAIVGTGMFVKNGAKKAN 121

Query: 122 KLYPWSQFI 130
           +    ++  
Sbjct: 122 RKIHIAKLC 130


>UniRef50_A6QB01 Transcriptional regulator n=1 Tax=Sulfurovum sp. NBC37-1
           RepID=A6QB01_SULNB
          Length = 170

 Score =  151 bits (381), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 93/181 (51%), Gaps = 11/181 (6%)

Query: 3   LRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVR 62
           ++KI+ L CLL  +  S+   E G+  P + ++          +     W+S+ L GKV 
Sbjct: 1   MKKII-LGCLLTAV--SSMAIELGKVPPSVELSGAS-----GGKVDGTAWSSSMLKGKVH 52

Query: 63  VLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKK 122
           +L ++      ++ N  L +A+K       +Y +  ++N   A     + + S L++ +K
Sbjct: 53  ILFYV--DPDERDLNKALTQALKKRHFDRKKYASVAVINL-AATWLPNVILESKLKAKQK 109

Query: 123 LYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKL 182
            +P + ++ D   V L  W L +++S +++ DK G++ + K G L+ +E++ V+ L++K 
Sbjct: 110 EFPDTIYVKDKKKVVLKKWDLADDNSDILIFDKSGKLIYKKFGKLSDKEIKSVLALIEKN 169

Query: 183 L 183
           L
Sbjct: 170 L 170


>UniRef50_Q1DDW9 Putative uncharacterized protein n=1 Tax=Myxococcus xanthus DK 1622
           RepID=Q1DDW9_MYXXD
          Length = 209

 Score =  138 bits (347), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 57/181 (31%), Gaps = 11/181 (6%)

Query: 7   LALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRVLQH 66
           L    +   +  S          P     D         +     W      GK  +L +
Sbjct: 22  LMKAWIAGALSISLAAGSALGAAPAPEPVDATLRTSAGKEVRLSKWR-----GKPVILFY 76

Query: 67  IAGRTSAKEKNATLIEAIKSAKLPHDRYQTT---TIVNTDDAIPGS-GMFVRSSLESNKK 122
                 + + N+TL + + +               + N  +           S +   +K
Sbjct: 77  --EDKDSTKLNSTLKKELFARGQERGILDAAWVLAVANLQNFDFFPARQIALSFVRDEEK 134

Query: 123 LYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKL 182
                  +     +    W+L  ++S +V+LD +G + +   G + P+E+     +L +L
Sbjct: 135 KVGVPILVDMDGALGKAPWKLPLKTSNIVLLDAEGALVYRHSGRMKPDELMTFFAVLSRL 194

Query: 183 L 183
           +
Sbjct: 195 V 195


>UniRef50_B0MXT5 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM
           17216 RepID=B0MXT5_9BACT
          Length = 173

 Score =  130 bits (326), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 59/154 (38%), Gaps = 11/154 (7%)

Query: 31  PIGITDRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAK-L 89
           P  ++D   L L+ D      W    L     ++ +I       ++N      ++    +
Sbjct: 26  PRKVSDVTLLDLNGDPTQLPYWGEKNL-----MIFYI--DPDHHKQNEDFTTDMEENHRV 78

Query: 90  PHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESS- 148
             +      ++N  DA        R+           +  + D N     AWQL + ++ 
Sbjct: 79  EGENLFGFGVMNLKDAPMIPNGMARNMARKRTASNG-ATVLADQNNTLRDAWQLGDCNNM 137

Query: 149 -AVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181
             ++++ K+G + + + G L+  + ++   ++QK
Sbjct: 138 FVLLLVSKEGDLVFMRKGPLSDADKKEFYQVVQK 171


>UniRef50_A9GVB8 Putative uncharacterized protein n=1 Tax=Sorangium cellulosum 'So
           ce 56' RepID=A9GVB8_SORC5
          Length = 193

 Score =  119 bits (298), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 7/144 (4%)

Query: 45  DQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAI-KSAKLPHDRYQTTTIVNTD 103
           +    +      L GK  ++  +     +K +N  L +A+ K  K    R         D
Sbjct: 52  EDADGRALQLKALQGKPILI--VYEDKDSKTQNQALKDALAKLTKGDRYRRGIAVAAIAD 109

Query: 104 DAI---PGSGMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQ 160
            +      +  FV+ ++    K    + +  D +G    A++L    S VVV+ K+G V 
Sbjct: 110 VSSYDFWPARGFVKDAIREESKKVGGTIYC-DWDGSFRAAYKLRRGVSNVVVVGKNGHVL 168

Query: 161 WAKDGALTPEEVQQVMDLLQKLLK 184
           +A +GAL PE   +V++LL+K ++
Sbjct: 169 FAAEGALKPESQSRVLELLRKEVE 192


>UniRef50_Q09AT1 Putative uncharacterized protein n=1 Tax=Stigmatella aurantiaca
           DW4/3-1 RepID=Q09AT1_STIAU
          Length = 156

 Score =  119 bits (297), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 11/152 (7%)

Query: 36  DRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQ 95
           D      +        W      GK  +L +      +   NA L E +           
Sbjct: 2   DARLRTSEGTPVQLSRWR-----GKPVILFY--EDKDSVNLNAKLKERLFELARERGLKD 54

Query: 96  TT---TIVNTDDAIPGS-GMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVV 151
           +     + N +            S ++  +K       +     +    W+L  ++S V+
Sbjct: 55  SAWVIAVANLEKFNFFPARQIALSYVKDEEKKAGVPILVDLEGTLGAEPWKLPMKTSTVM 114

Query: 152 VLDKDGRVQWAKDGALTPEEVQQVMDLLQKLL 183
           +LD +G + +   G +  ++++  + LL +L+
Sbjct: 115 LLDAEGILLYRYSGRMAEKDMELFIALLARLV 146


>UniRef50_P24508 Sucrose operon repressor n=1 Tax=Vibrio alginolyticus
           RepID=SCRR_VIBAL
          Length = 94

 Score = 52.0 bits (123), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 32/42 (76%)

Query: 142 QLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLL 183
            L EESSA++V DK G+V + K+GAL  +E+ +V++L+++ +
Sbjct: 53  DLKEESSAIIVQDKTGKVLFVKEGALEQDEIAKVIELIKQNI 94


>UniRef50_Q0AXB8 Sensor protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str.
           Goettingen RepID=Q0AXB8_SYNWW
          Length = 763

 Score = 44.7 bits (104), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 53/144 (36%), Gaps = 10/144 (6%)

Query: 49  YKTWNSAQLVGK-VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIP 107
              W+  + +GK +  +  I   TS +       + + +  L     + + +++ D    
Sbjct: 53  LTGWSREEALGKHLYEVFRIIDNTSKQPLENPF-DNVFTRGLSQGLLRNSALLDRDGETR 111

Query: 108 GSGMFVRSSLESNKKLYPWSQFIVDSNGVALG-------AWQLDEESSAVVVLDKDGRVQ 160
            +       ++ N+K         D + +          +W L   S+A+++ D  G VQ
Sbjct: 112 FASACASPIIDKNQKRAGMVVVFRDIDRIKKNEDEIRCLSWVLQLSSNAIIIFDIQGIVQ 171

Query: 161 WAKDGALTPEEVQQVMDLLQKLLK 184
           +      T     +  +++ + L+
Sbjct: 172 FINS-RFTQLTGYEAYEVVNRNLR 194


>UniRef50_A8LCC7 Redoxin domain protein n=2 Tax=Frankia RepID=A8LCC7_FRASN
          Length = 209

 Score = 44.3 bits (103), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 41/142 (28%), Gaps = 11/142 (7%)

Query: 42  LDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVN 101
           +          + A L GK  V+   A   +        +  +                N
Sbjct: 79  MSGATLDGSQLDLASLRGKPVVVNFWASWCAPCRAETPGLVTLAGRNSDVAFVGVNEKDN 138

Query: 102 TDDAIPGSGMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQW 161
              A   +  F             +   + D  G     W +     +  VLD DGR+  
Sbjct: 139 ASSAKAFTRDF----------KVGYPSIV-DRLGTLAAGWPVAPGLPSTFVLDADGRIAA 187

Query: 162 AKDGALTPEEVQQVMDLLQKLL 183
              G + P E+  V++ L+  +
Sbjct: 188 RFTGGVLPAELTTVLERLRTEV 209


>UniRef50_Q67RH4 Cytochrome C biogenesis protein n=1 Tax=Symbiobacterium
           thermophilum RepID=Q67RH4_SYMTH
          Length = 177

 Score = 43.9 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 15/176 (8%)

Query: 5   KILALTCLLLPMMASAH-QFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRV 63
            +L L   L  ++   +     G  VP   +    EL       + +++  + L GK  +
Sbjct: 15  TLLLLAAWLGYVLLWPNPNAAAGSGVPVGSVAPDFEL----KTVTGESYRLSDLRGKAVL 70

Query: 64  LQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKL 123
           L   A      E+    +E                 ++ D+       F       ++  
Sbjct: 71  LNFFATWCRYCEQEMPALEEAYRTYADQG--FVVLAIDLDETDLAITAF------RDEMG 122

Query: 124 YPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLL 179
             +   + D        +Q+    +   + D+ G V+    G LTPE++++ + L+
Sbjct: 123 ITFPILV-DRGSNVARVYQIVPLPTTYFI-DRSGVVRGKWTGPLTPEQLREALQLI 176


>UniRef50_A9I0L2 Predicted thioredoxin n=6 Tax=Betaproteobacteria RepID=A9I0L2_BORPD
          Length = 164

 Score = 43.6 bits (101), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 62/176 (35%), Gaps = 20/176 (11%)

Query: 3   LRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVR 62
            + IL L  ++   + +   +      P +  T              KT++   L GKV 
Sbjct: 2   KKLILTLAVVVAAGIGAWFVWRPAPPAPDVAFT----------TIEGKTFSMHDLRGKVV 51

Query: 63  VLQHIAGRTSAKEKNATLIEAI-KSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121
           +++  A  TS       +  AI    +     Y+T  +            +V +  E+ K
Sbjct: 52  LVKFWA--TSCVTCVKQMPGAIDTYNEYAPKGYETVAV----AMSYDPPNYVLNFAETRK 105

Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMD 177
             +P +   +D  G    ++   + +    ++DK GR+     G   P E    ++
Sbjct: 106 LPFPVA---LDVKGELARSFGDVKLTPTAFLIDKQGRIIKRYLGEYDPAEFHAAIE 158


>UniRef50_C6AMB8 ResA n=6 Tax=Pasteurellaceae RepID=C6AMB8_AGGAN
          Length = 167

 Score = 43.2 bits (100), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 65/177 (36%), Gaps = 28/177 (15%)

Query: 5   KILALTCLLLPMMA-SAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRV 63
           K+L ++ ++   ++      + GQ  P I   D     L  ++ S   W      GK  +
Sbjct: 11  KMLGISAVVFFSVSCKEESAQIGQPAPEIAAFD-----LQGNKASLSDW-----QGKTVL 60

Query: 64  LQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTT---IVNTDDAIPGSGMFVRSSLESN 120
           +   +    A       I  +++ +   ++Y        +N D     +   V       
Sbjct: 61  INFWSETCGA------CIAELRTLQQWAEKYPNQVQLIAMNIDGEKADTQAIV------T 108

Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMD 177
           K+      F  D   +    +QL   +    V+D +G+V +  +G ++  ++Q++  
Sbjct: 109 KRQLTLPVF-KDQMKITAERYQL-IGTPTSFVIDPNGKVIYKFEGLISENDLQRLFQ 163


>UniRef50_C8TCQ6 Transcriptional regulator YtfJ n=1 Tax=Klebsiella pneumoniae
          subsp. rhinoscleromatis ATCC 13884 RepID=C8TCQ6_KLEPR
          Length = 79

 Score = 42.8 bits (99), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 44/60 (73%), Gaps = 5/60 (8%)

Query: 1  MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYK-----TWNSA 55
          MTLR ILA + LLLP++A+AH F  GQRV P+G+ DRGEL+LDKD+FSYK     +W   
Sbjct: 1  MTLRSILAASLLLLPLLATAHNFVDGQRVAPVGVADRGELILDKDKFSYKTGIAPSWREK 60


>UniRef50_C4ZMJ8 Redoxin domain protein n=1 Tax=Thauera sp. MZ1T RepID=C4ZMJ8_THASP
          Length = 165

 Score = 42.0 bits (97), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 11/136 (8%)

Query: 48  SYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIP 107
             +++ +A L GKV ++   A   +   K    ++A +  K     Y+T  +    D   
Sbjct: 37  QGQSFRTADLRGKVVLVNFWATTCTTCIKEMPALKATQE-KFEARGYRTVAVAMDYDPPA 95

Query: 108 GSGMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGAL 167
               FV  S        P++ F++D +G     ++    +    VLDK GR+     G  
Sbjct: 96  QVAAFVERSA------LPFT-FVLDRDGSIARGFEGVRLTPTSYVLDKHGRIVQKILGEP 148

Query: 168 TPEEVQQVMDLLQKLL 183
              +  ++  LL++LL
Sbjct: 149 ---DFDKLHGLLEQLL 161


>UniRef50_Q1N0M7 Thiol:disulfide interchange protein DsbE, putative n=1
           Tax=Bermanella marisrubri RepID=Q1N0M7_9GAMM
          Length = 166

 Score = 41.6 bits (96), Expect = 0.012,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 79/187 (42%), Gaps = 28/187 (14%)

Query: 2   TLRKILALTCLLLPMMASAHQFET--GQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVG 59
           +++ +L++  L + +M SA       GQ  P   +     L+  + + S K +      G
Sbjct: 3   SIKTVLSMLLLSVGLMFSAASIAIEKGQTAPNFRL----PLLDSQKKVSLKQYR-----G 53

Query: 60  KVRVLQHIAGRTSAKEKNATLIEAIKS--AKLPHDRYQTTTIVNTDDAIPGSGMFVRSSL 117
           KV  +   A       ++  L+  +++   K P +       +N D+ +  +  F+    
Sbjct: 54  KVVYVDFWASWCGPCRQSLPLLTKLRAEMKKQPFEVL----AINLDEEVDAAKGFL---- 105

Query: 118 ESNKKLYPWSQ-FIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVM 176
               K YP +   ++D  G     +QL    ++ +V DK GR++    G   P+++ ++ 
Sbjct: 106 ----KQYPVNYPVLLDPEGNVAAQYQLPGMPTSFIV-DKRGRIKHVHVG-FKPQDIDKIR 159

Query: 177 DLLQKLL 183
             ++ LL
Sbjct: 160 QQVKSLL 166


>UniRef50_B3U4I8 Putative thioredoxin n=1 Tax=Candidatus Nitrospira defluvii
           RepID=B3U4I8_9BACT
          Length = 181

 Score = 40.5 bits (93), Expect = 0.028,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 75/189 (39%), Gaps = 28/189 (14%)

Query: 3   LRKILALTCLLLPMMASAHQ-----FETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQL 57
            R ++A+  +L+ + A  H      F+ G+  P   +T         D  S       QL
Sbjct: 2   KRVLIAVAIVLVHLWAVHHVVAAGFFKVGEPAPAFSLTSVT-----GDAVSL-----EQL 51

Query: 58  VGKVRVL--QHIAGRTSAKEKN-ATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVR 114
            GKV VL   HI      +  N   + EA+    +         + ++ D+  G G F+ 
Sbjct: 52  KGKVVVLGLFHICDPCMTQGTNLQKVHEAMAGKNV-----AVVGVNSSGDSKRGVGEFLS 106

Query: 115 SSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQ 174
           +        YP   +++D N      +   +    V V+D+ G ++W + G +     + 
Sbjct: 107 AFPVKVT--YP---YLLDPNKTTDKLYGGGKFIPNVYVIDQRGVIRWQRVGNMELAGAEV 161

Query: 175 VMDLLQKLL 183
           ++  ++KLL
Sbjct: 162 IIQEVEKLL 170


>UniRef50_Q2RHG0 Peroxiredoxin-like n=1 Tax=Moorella thermoacetica ATCC 39073
           RepID=Q2RHG0_MOOTA
          Length = 167

 Score = 40.1 bits (92), Expect = 0.033,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 59/177 (33%), Gaps = 13/177 (7%)

Query: 1   MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60
           M  +  + L  +LL +   A  F    R   +   D     LD +Q   K      L G+
Sbjct: 1   MQPKWRVPLLIILLMVAVLALAFFLPHRGDQVRAPDFTLPALDGNQVDLKR-----LQGQ 55

Query: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120
           V VL   A            ++A      P         +   + I G   F+       
Sbjct: 56  VVVLNFWATWCPYCVAEMEELDAAAGRLAPRGVKVLAVNIMQRETIQGIRAFL------- 108

Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMD 177
            +       ++D       A+ +        ++D+ GR++  K G L P E+ +++ 
Sbjct: 109 GEKRHNYLVLLDRGSKVADAYGV-SGIHTTFIIDRQGRLRRVKKGPLGPGELDRLLQ 164


>UniRef50_A9VTU5 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal
           allergen n=8 Tax=Bacillus cereus group
           RepID=A9VTU5_BACWK
          Length = 178

 Score = 39.3 bits (90), Expect = 0.065,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 13/160 (8%)

Query: 18  ASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKN 77
           AS      G  V  +       L    +  + +        GK  +L   A      +  
Sbjct: 30  ASKSNIPIGTEVGNVA------LDFLLETTTGQEVRLTDYKGKKVILNFWASWCGPCKIE 83

Query: 78  ATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKLYPWSQFIVDSNGVA 137
              +E                 VN           V+  LE NK  +P    ++D  G A
Sbjct: 84  MPDMEKFYHDTKDMGI--EIVAVNATATEKDPNN-VKQFLEENKYTFP---VLLDQKGQA 137

Query: 138 LGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMD 177
              +Q+    ++ V+ D +G +Q+   G +T E++++ ++
Sbjct: 138 SATYQIISIPTSFVI-DTNGVIQYKHVGPMTYEKMKEYVN 176


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P39187 Uncharacterized protein ytfJ n=198 Tax=Gammaprot...   222   5e-57
UniRef50_C3NV58 Protein YtfJ n=54 Tax=Gammaproteobacteria RepID=...   218   1e-55
UniRef50_P44478 Uncharacterized protein HI0045 n=25 Tax=Pasteure...   211   6e-54
UniRef50_C6CAS8 Putative uncharacterized protein n=1 Tax=Dickeya...   211   8e-54
UniRef50_C9PS15 Transcriptional regulator YtfJ n=2 Tax=Gammaprot...   210   1e-53
UniRef50_Q5E822 Predicted transcriptional regulator n=21 Tax=Vib...   208   1e-52
UniRef50_A6FG85 Putative uncharacterized protein n=1 Tax=Moritel...   203   2e-51
UniRef50_B7RUM8 Putative uncharacterized protein n=1 Tax=marine ...   197   1e-49
UniRef50_A0YEF3 Putative uncharacterized protein n=1 Tax=marine ...   188   9e-47
UniRef50_A0Z1Q9 Predicted transcriptional regulator n=1 Tax=mari...   176   4e-43
UniRef50_A6Q2B2 Transcriptional regulator n=1 Tax=Nitratiruptor ...   171   1e-41
UniRef50_A6QB01 Transcriptional regulator n=1 Tax=Sulfurovum sp....   151   1e-35
UniRef50_A4P185 Putative uncharacterized protein n=2 Tax=Haemoph...   151   1e-35
UniRef50_Q1DDW9 Putative uncharacterized protein n=1 Tax=Myxococ...   140   2e-32
UniRef50_B0MXT5 Putative uncharacterized protein n=1 Tax=Alistip...   132   6e-30
UniRef50_Q09AT1 Putative uncharacterized protein n=1 Tax=Stigmat...   121   2e-26
UniRef50_A9GVB8 Putative uncharacterized protein n=1 Tax=Sorangi...   117   2e-25
UniRef50_Q0AXB8 Sensor protein n=1 Tax=Syntrophomonas wolfei sub...   112   5e-24
UniRef50_P24508 Sucrose operon repressor n=1 Tax=Vibrio alginoly...    54   3e-06

Sequences not found previously or not previously below threshold:

UniRef50_C6AMB8 ResA n=6 Tax=Pasteurellaceae RepID=C6AMB8_AGGAN        45   0.001
UniRef50_Q67RH4 Cytochrome C biogenesis protein n=1 Tax=Symbioba...    45   0.002
UniRef50_A9I0L2 Predicted thioredoxin n=6 Tax=Betaproteobacteria...    44   0.003
UniRef50_A8LCC7 Redoxin domain protein n=2 Tax=Frankia RepID=A8L...    44   0.004
UniRef50_C4ZMJ8 Redoxin domain protein n=1 Tax=Thauera sp. MZ1T ...    41   0.019

>UniRef50_P39187 Uncharacterized protein ytfJ n=198 Tax=Gammaproteobacteria
           RepID=YTFJ_ECOLI
          Length = 184

 Score =  222 bits (565), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 184/184 (100%), Positives = 184/184 (100%)

Query: 1   MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60
           MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK
Sbjct: 1   MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60

Query: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120
           VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN
Sbjct: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120

Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180
           KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ
Sbjct: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180

Query: 181 KLLK 184
           KLLK
Sbjct: 181 KLLK 184


>UniRef50_C3NV58 Protein YtfJ n=54 Tax=Gammaproteobacteria RepID=C3NV58_VIBCJ
          Length = 183

 Score =  218 bits (554), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 86/183 (46%), Positives = 121/183 (66%)

Query: 1   MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60
           M  + ++AL     P +A AH    G  VP +G+   GE+VL  +  +Y+ W SA L+GK
Sbjct: 1   MKNKTLIALLLACSPTLAFAHNLTVGSPVPAVGVEKHGEIVLQDNNINYQKWRSADLLGK 60

Query: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120
           VRV+Q IAGR+S+KE NA L+ AI +AK P + YQTTTI+N DDAI G+  FV+SS + +
Sbjct: 61  VRVIQAIAGRSSSKEMNAPLMAAITAAKFPAESYQTTTIINQDDAIWGTSSFVKSSAQDS 120

Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180
           KK +PWS  ++D  G+   AWQL  ESSA++V DK G V + K+GAL   ++Q V+ L+Q
Sbjct: 121 KKEFPWSSMVLDEFGLVAQAWQLQAESSAIIVQDKQGNVLFVKEGALNEADIQTVLGLIQ 180

Query: 181 KLL 183
           + L
Sbjct: 181 QNL 183


>UniRef50_P44478 Uncharacterized protein HI0045 n=25 Tax=Pasteurellaceae
           RepID=Y045_HAEIN
          Length = 184

 Score =  211 bits (538), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 74/183 (40%), Positives = 118/183 (64%), Gaps = 1/183 (0%)

Query: 3   LRKILALTC-LLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61
            ++ILAL C ++      AH  +  Q +P + +++ GE+VL      ++ W SA+L GKV
Sbjct: 2   KKQILALVCGVIFSSSTWAHNLQLEQSLPSVKVSEYGEIVLSGKDTVFQPWGSAELAGKV 61

Query: 62  RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121
           RV+ H+AGRT+AKE N ++I+ IK++     +YQTTTI+N DDAI G+GMFV++  +  K
Sbjct: 62  RVVHHLAGRTAAKEXNQSMIDVIKASHFNPVKYQTTTIINADDAIVGTGMFVKNGAKKGK 121

Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181
           +  P SQ ++D       AW L+ + SA++VLDK G+V++ K+G L+  ++Q V+ L+  
Sbjct: 122 QENPHSQVVLDDKSAVKNAWGLNSKDSAIIVLDKTGKVKFVKEGKLSDSDIQTVISLVNG 181

Query: 182 LLK 184
           L K
Sbjct: 182 LTK 184


>UniRef50_C6CAS8 Putative uncharacterized protein n=1 Tax=Dickeya dadantii Ech703
           RepID=C6CAS8_DICDC
          Length = 201

 Score =  211 bits (537), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 91/185 (49%), Positives = 127/185 (68%), Gaps = 2/185 (1%)

Query: 1   MTLRKILALTCLL--LPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLV 58
           MT R  L    +L   P    AH     + +P + ++D GEL     +  Y +W+SAQLV
Sbjct: 1   MTRRACLLTIWVLLIFPRWLPAHILPLYRMLPDVVVSDGGELQYQDGKPHYLSWSSAQLV 60

Query: 59  GKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLE 118
           GKVR++QHIAGR SA+  N TL+ A+K+A LP + YQTTTIVN D+A+ G+G FVR  +E
Sbjct: 61  GKVRLIQHIAGRMSARNMNETLMTALKAANLPREYYQTTTIVNADEAVIGTGFFVRKRIE 120

Query: 119 SNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDL 178
           + K  YPW+QF++D+ G    AWQL  +S+AV+VLDK+GR+++ KDG+L  +EVQQV++L
Sbjct: 121 AGKTQYPWTQFVLDNQGEVRKAWQLTPKSAAVIVLDKEGRIRYVKDGSLNRQEVQQVVNL 180

Query: 179 LQKLL 183
           LQ LL
Sbjct: 181 LQVLL 185


>UniRef50_C9PS15 Transcriptional regulator YtfJ n=2 Tax=Gammaproteobacteria
           RepID=C9PS15_9PAST
          Length = 191

 Score =  210 bits (535), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 78/179 (43%), Positives = 112/179 (62%)

Query: 6   ILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRVLQ 65
           +L L  +       AH  +    + P+ + + GEL +  D  SYK W+S QLVGKVR++ 
Sbjct: 13  VLGLAAVFCSTGLFAHNIQLNSPLAPVSVEEDGELSVKGDDVSYKAWSSVQLVGKVRIVN 72

Query: 66  HIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKLYP 125
           H AGR   K++N TLI AIK+A+    +YQTTTI+N DDA  G+G FV+S  E  KK  P
Sbjct: 73  HFAGRRDVKDRNETLINAIKAAQFDRSKYQTTTIINADDATFGTGSFVKSGAEKGKKKNP 132

Query: 126 WSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLLK 184
            SQ ++D  G    AWQL E+ + V+VLDK G+V++  +GAL+  +VQ+V+ L+ +L K
Sbjct: 133 HSQVVLDQRGAVKNAWQLKEKENLVIVLDKSGKVKFVHEGALSGAQVQEVISLITELTK 191


>UniRef50_Q5E822 Predicted transcriptional regulator n=21 Tax=Vibrionales
           RepID=Q5E822_VIBF1
          Length = 183

 Score =  208 bits (528), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 81/183 (44%), Positives = 115/183 (62%)

Query: 1   MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60
           M   K+L L   LLP ++ AH     + VP + I   GE+       +Y+ WN+ QL GK
Sbjct: 1   MKKVKLLTLAACLLPSLSFAHNLTLNKEVPSVSIEQYGEIFFKNSAATYQNWNTEQLKGK 60

Query: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120
           VRVLQ IAGR+SAK  NA L+ AI   K P   YQTTTI+N DD+I G+G FV+SS E +
Sbjct: 61  VRVLQAIAGRSSAKAMNADLMSAITLEKFPETEYQTTTIINQDDSIWGTGGFVKSSAEES 120

Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180
           K+ + WS  ++D +G    AW L  ESSA++V DK+G++ + K+G L+ +E++QV+ L+ 
Sbjct: 121 KEEFSWSSMVLDEHGKVAKAWDLQPESSAIIVQDKEGKILFVKEGKLSNDEIKQVIALIH 180

Query: 181 KLL 183
             L
Sbjct: 181 TQL 183


>UniRef50_A6FG85 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36
           RepID=A6FG85_9GAMM
          Length = 182

 Score =  203 bits (517), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/182 (39%), Positives = 118/182 (64%), Gaps = 1/182 (0%)

Query: 3   LRKILALTCL-LLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61
           ++KIL +  L L   +A +H    G+ +P + ITD+G + L +  F Y+ W SA+L  KV
Sbjct: 1   MKKILTVIALSLTSFVALSHSLTVGENLPQVTITDKGYVDLVEGDFEYRQWTSAELQNKV 60

Query: 62  RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121
            ++QHIAGRTSAKE N  +I+A+ +A  P ++Y T T+VN D++I G+G  V S ++SNK
Sbjct: 61  ILIQHIAGRTSAKELNDPMIDAVIAADFPFEKYNTATLVNLDESIWGTGAIVASQVKSNK 120

Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181
           + +P + F++DS G     W L E+SSA+++LD+ G++ + KDG + P E+  V+ ++  
Sbjct: 121 EEFPDAIFVLDSEGAMRKTWALTEKSSAIILLDQAGKILYVKDGEMNPTEIDTVIGIINA 180

Query: 182 LL 183
            +
Sbjct: 181 NI 182


>UniRef50_B7RUM8 Putative uncharacterized protein n=1 Tax=marine gamma
           proteobacterium HTCC2148 RepID=B7RUM8_9GAMM
          Length = 186

 Score =  197 bits (501), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 2/183 (1%)

Query: 2   TLRKILALTCLLLPMMASAH-QFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGK 60
           T++ + +L  L L  +++A      G+ +PP+ I+  GE++LD D   Y+ WNS   V K
Sbjct: 3   TVKTLTSLAGLFLLSLSTASFAATVGEPLPPLAISQPGEIMLDGDGIGYQPWNSQNTVDK 62

Query: 61  VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESN 120
           V V+Q+I    SA +      + ++        +  TT+++ D A+ G+   V S +E N
Sbjct: 63  VHVVQYIPATMSASKMYRPFTDYLEE-NYDPSHFHVTTVIDLDAALWGTSGLVSSEVEKN 121

Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQ 180
           K+ YP S  ++D  G  +G W L +  S + ++D+ G V +A    +   E +   ++  
Sbjct: 122 KRKYPLSTLVLDKTGSGIGTWSLGKNGSGLFIVDETGIVHFAIRHKMDATEQRDAEEVFS 181

Query: 181 KLL 183
            L+
Sbjct: 182 TLV 184


>UniRef50_A0YEF3 Putative uncharacterized protein n=1 Tax=marine gamma
           proteobacterium HTCC2143 RepID=A0YEF3_9GAMM
          Length = 185

 Score =  188 bits (476), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 5/183 (2%)

Query: 6   ILALTCLLLPMMASAHQFETGQ----RVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61
           I  L C +     S   F  G      +P + I DRGEL+++K  FS++ W++    GKV
Sbjct: 3   IQQLVCGVFLAFISTLAFAQGPLVDSPLPALTIADRGELLMEKGDFSFRPWSTEHNPGKV 62

Query: 62  RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121
            ++Q+     S  E      + ++ + L   +Y  TTIVN D A+ G+  FV S L+SNK
Sbjct: 63  HIVQYFGATKSDSELFKPFTDLLQDS-LGVGKYHVTTIVNLDAAVWGTSSFVISELKSNK 121

Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181
           + YP S  ++D  G  +G W+L EE + + ++D++G V++     +T  E+   +DL++ 
Sbjct: 122 RKYPLSTIVLDQEGSGIGRWKLGEEGAGLAIIDQEGVVRYFTKTPMTDAEMDASLDLVKA 181

Query: 182 LLK 184
            + 
Sbjct: 182 RVD 184


>UniRef50_A0Z1Q9 Predicted transcriptional regulator n=1 Tax=marine gamma
           proteobacterium HTCC2080 RepID=A0Z1Q9_9GAMM
          Length = 181

 Score =  176 bits (446), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 92/180 (51%), Gaps = 5/180 (2%)

Query: 7   LALTCLLLPMMASAH---QFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRV 63
           + L    LP  A A+       G+ +PP+ IT+ G+++LD D +S   W+      KV+V
Sbjct: 1   MGLLLWSLPGYAEANATANLILGEPLPPVTITEGGQVILDGDGYSLAPWSWPGSSNKVQV 60

Query: 64  LQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKL 123
           LQ++AG     +    + E ++  +L  DRY  T +VN +        FVRS++   +++
Sbjct: 61  LQYVAGTRKGGDLYDPMTERMR-RELDFDRYDITAVVNLEVTSAFVKPFVRSAVVDEQRI 119

Query: 124 YPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLL 183
           +  +  ++D  G+    W L ++ +A VV+D+ G V     GA +  + ++   +L+ L+
Sbjct: 120 FTRATLVLDERGIGQATWNLTQQ-AAFVVVDRKGLVVDVILGAPSEADFERSFQVLRDLI 178


>UniRef50_A6Q2B2 Transcriptional regulator n=1 Tax=Nitratiruptor sp. SB155-2
           RepID=A6Q2B2_NITSB
          Length = 173

 Score =  171 bits (433), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 87/182 (47%), Gaps = 12/182 (6%)

Query: 3   LRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVR 62
           ++K+  L+ +   +MA     E G     + +                 +++A + GKV 
Sbjct: 1   MKKVFMLSIIACFLMA----LEIGTIPKRVVLEKD-----KGGTIDGSPFDTASMKGKVY 51

Query: 63  VLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKK 122
           ++  I      ++ N    E +K+     +RY +  I+N   A       + + L++ +K
Sbjct: 52  LV--IYSDPDKRDLNEPFFEKVKAKNFDRNRYTSIAIINM-AATWIPNFLLNAILKAKQK 108

Query: 123 LYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKL 182
            YP++ ++ D+  V + AWQL +    V++ D++GRVQ+   G L+ +E ++ + +L++L
Sbjct: 109 KYPYTVYVKDNKKVLVHAWQLPDNDQVVMIFDQNGRVQYIGHGKLSQKEQERALHILEEL 168

Query: 183 LK 184
           + 
Sbjct: 169 IN 170


>UniRef50_A6QB01 Transcriptional regulator n=1 Tax=Sulfurovum sp. NBC37-1
           RepID=A6QB01_SULNB
          Length = 170

 Score =  151 bits (381), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 92/181 (50%), Gaps = 11/181 (6%)

Query: 3   LRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVR 62
           ++KI+ L CLL     S+   E G+  P + ++          +     W+S+ L GKV 
Sbjct: 1   MKKII-LGCLLTA--VSSMAIELGKVPPSVELSGA-----SGGKVDGTAWSSSMLKGKVH 52

Query: 63  VLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKK 122
           +L ++      ++ N  L +A+K       +Y +  ++N   A     + + S L++ +K
Sbjct: 53  ILFYV--DPDERDLNKALTQALKKRHFDRKKYASVAVINL-AATWLPNVILESKLKAKQK 109

Query: 123 LYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKL 182
            +P + ++ D   V L  W L +++S +++ DK G++ + K G L+ +E++ V+ L++K 
Sbjct: 110 EFPDTIYVKDKKKVVLKKWDLADDNSDILIFDKSGKLIYKKFGKLSDKEIKSVLALIEKN 169

Query: 183 L 183
           L
Sbjct: 170 L 170


>UniRef50_A4P185 Putative uncharacterized protein n=2 Tax=Haemophilus influenzae
           RepID=A4P185_HAEIN
          Length = 130

 Score =  151 bits (380), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/129 (40%), Positives = 83/129 (64%), Gaps = 1/129 (0%)

Query: 3   LRKILALTC-LLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKV 61
            ++ILAL C ++      AH  +  Q +P + +T+ GE+VL     +++ W SA+L GKV
Sbjct: 2   KKQILALVCGVMFSSSTWAHNLQLEQSLPAVQVTEYGEIVLSGKDTAFQPWGSAELAGKV 61

Query: 62  RVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121
           RV+ H+AGRT+AKEKN ++I+ IK++     +YQTTTI+N DDAI G+GMFV++  +   
Sbjct: 62  RVVHHLAGRTAAKEKNQSMIDVIKASHFNPVKYQTTTIINADDAIVGTGMFVKNGAKKAN 121

Query: 122 KLYPWSQFI 130
           +    ++  
Sbjct: 122 RKIHIAKLC 130


>UniRef50_Q1DDW9 Putative uncharacterized protein n=1 Tax=Myxococcus xanthus DK 1622
           RepID=Q1DDW9_MYXXD
          Length = 209

 Score =  140 bits (352), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 57/181 (31%), Gaps = 11/181 (6%)

Query: 7   LALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRVLQH 66
           L    +   +  S          P     D         +     W      GK  +L +
Sbjct: 22  LMKAWIAGALSISLAAGSALGAAPAPEPVDATLRTSAGKEVRLSKWR-----GKPVILFY 76

Query: 67  IAGRTSAKEKNATLIEAIKSAKLPHDRYQTT---TIVNTDDAIPGS-GMFVRSSLESNKK 122
                 + + N+TL + + +               + N  +           S +   +K
Sbjct: 77  --EDKDSTKLNSTLKKELFARGQERGILDAAWVLAVANLQNFDFFPARQIALSFVRDEEK 134

Query: 123 LYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKL 182
                  +     +    W+L  ++S +V+LD +G + +   G + P+E+     +L +L
Sbjct: 135 KVGVPILVDMDGALGKAPWKLPLKTSNIVLLDAEGALVYRHSGRMKPDELMTFFAVLSRL 194

Query: 183 L 183
           +
Sbjct: 195 V 195


>UniRef50_B0MXT5 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM
           17216 RepID=B0MXT5_9BACT
          Length = 173

 Score =  132 bits (331), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 59/154 (38%), Gaps = 11/154 (7%)

Query: 31  PIGITDRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAK-L 89
           P  ++D   L L+ D      W    L     ++ +I       ++N      ++    +
Sbjct: 26  PRKVSDVTLLDLNGDPTQLPYWGEKNL-----MIFYI--DPDHHKQNEDFTTDMEENHRV 78

Query: 90  PHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESS- 148
             +      ++N  DA        R+           +  + D N     AWQL + ++ 
Sbjct: 79  EGENLFGFGVMNLKDAPMIPNGMARNMARKRTASNG-ATVLADQNNTLRDAWQLGDCNNM 137

Query: 149 -AVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK 181
             ++++ K+G + + + G L+  + ++   ++QK
Sbjct: 138 FVLLLVSKEGDLVFMRKGPLSDADKKEFYQVVQK 171


>UniRef50_Q09AT1 Putative uncharacterized protein n=1 Tax=Stigmatella aurantiaca
           DW4/3-1 RepID=Q09AT1_STIAU
          Length = 156

 Score =  121 bits (302), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 11/152 (7%)

Query: 36  DRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQ 95
           D      +        W      GK  +L +      +   NA L E +           
Sbjct: 2   DARLRTSEGTPVQLSRWR-----GKPVILFY--EDKDSVNLNAKLKERLFELARERGLKD 54

Query: 96  TT---TIVNTDDAIPGS-GMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVV 151
           +     + N +            S ++  +K       +     +    W+L  ++S V+
Sbjct: 55  SAWVIAVANLEKFNFFPARQIALSYVKDEEKKAGVPILVDLEGTLGAEPWKLPMKTSTVM 114

Query: 152 VLDKDGRVQWAKDGALTPEEVQQVMDLLQKLL 183
           +LD +G + +   G +  ++++  + LL +L+
Sbjct: 115 LLDAEGILLYRYSGRMAEKDMELFIALLARLV 146


>UniRef50_A9GVB8 Putative uncharacterized protein n=1 Tax=Sorangium cellulosum 'So
           ce 56' RepID=A9GVB8_SORC5
          Length = 193

 Score =  117 bits (292), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 7/144 (4%)

Query: 45  DQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAI-KSAKLPHDRYQTTTIVNTD 103
           +    +      L GK  ++  +     +K +N  L +A+ K  K    R         D
Sbjct: 52  EDADGRALQLKALQGKPILI--VYEDKDSKTQNQALKDALAKLTKGDRYRRGIAVAAIAD 109

Query: 104 DAI---PGSGMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQ 160
            +      +  FV+ ++    K    + +  D +G    A++L    S VVV+ K+G V 
Sbjct: 110 VSSYDFWPARGFVKDAIREESKKVGGTIYC-DWDGSFRAAYKLRRGVSNVVVVGKNGHVL 168

Query: 161 WAKDGALTPEEVQQVMDLLQKLLK 184
           +A +GAL PE   +V++LL+K ++
Sbjct: 169 FAAEGALKPESQSRVLELLRKEVE 192


>UniRef50_Q0AXB8 Sensor protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str.
           Goettingen RepID=Q0AXB8_SYNWW
          Length = 763

 Score =  112 bits (280), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 53/144 (36%), Gaps = 10/144 (6%)

Query: 49  YKTWNSAQLVGK-VRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIP 107
              W+  + +GK +  +  I   TS +       + + +  L     + + +++ D    
Sbjct: 53  LTGWSREEALGKHLYEVFRIIDNTSKQPLENPF-DNVFTRGLSQGLLRNSALLDRDGETR 111

Query: 108 GSGMFVRSSLESNKKLYPWSQFIVDSNGVALG-------AWQLDEESSAVVVLDKDGRVQ 160
            +       ++ N+K         D + +          +W L   S+A+++ D  G VQ
Sbjct: 112 FASACASPIIDKNQKRAGMVVVFRDIDRIKKNEDEIRCLSWVLQLSSNAIIIFDIQGIVQ 171

Query: 161 WAKDGALTPEEVQQVMDLLQKLLK 184
           +      T     +  +++ + L+
Sbjct: 172 FINS-RFTQLTGYEAYEVVNRNLR 194


>UniRef50_P24508 Sucrose operon repressor n=1 Tax=Vibrio alginolyticus
           RepID=SCRR_VIBAL
          Length = 94

 Score = 53.6 bits (127), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 32/42 (76%)

Query: 142 QLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLL 183
            L EESSA++V DK G+V + K+GAL  +E+ +V++L+++ +
Sbjct: 53  DLKEESSAIIVQDKTGKVLFVKEGALEQDEIAKVIELIKQNI 94


>UniRef50_C6AMB8 ResA n=6 Tax=Pasteurellaceae RepID=C6AMB8_AGGAN
          Length = 167

 Score = 45.2 bits (105), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 65/177 (36%), Gaps = 28/177 (15%)

Query: 5   KILALTCLLLPMMA-SAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRV 63
           K+L ++ ++   ++      + GQ  P I   D     L  ++ S   W      GK  +
Sbjct: 11  KMLGISAVVFFSVSCKEESAQIGQPAPEIAAFD-----LQGNKASLSDW-----QGKTVL 60

Query: 64  LQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTT---IVNTDDAIPGSGMFVRSSLESN 120
           +   +    A       I  +++ +   ++Y        +N D     +   V       
Sbjct: 61  INFWSETCGA------CIAELRTLQQWAEKYPNQVQLIAMNIDGEKADTQAIVT------ 108

Query: 121 KKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMD 177
           K+      F  D   +    +QL   +    V+D +G+V +  +G ++  ++Q++  
Sbjct: 109 KRQLTLPVF-KDQMKITAERYQL-IGTPTSFVIDPNGKVIYKFEGLISENDLQRLFQ 163


>UniRef50_Q67RH4 Cytochrome C biogenesis protein n=1 Tax=Symbiobacterium
           thermophilum RepID=Q67RH4_SYMTH
          Length = 177

 Score = 44.8 bits (104), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 15/176 (8%)

Query: 5   KILALTCLLLPMMASAH-QFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRV 63
            +L L   L  ++   +     G  VP   +    EL       + +++  + L GK  +
Sbjct: 15  TLLLLAAWLGYVLLWPNPNAAAGSGVPVGSVAPDFEL----KTVTGESYRLSDLRGKAVL 70

Query: 64  LQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKL 123
           L   A      E+    +E                 ++ D+       F       ++  
Sbjct: 71  LNFFATWCRYCEQEMPALEEAYRTYADQG--FVVLAIDLDETDLAITAF------RDEMG 122

Query: 124 YPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLL 179
             +   + D        +Q+    +   + D+ G V+    G LTPE++++ + L+
Sbjct: 123 ITFPILV-DRGSNVARVYQIVPLPTTYFI-DRSGVVRGKWTGPLTPEQLREALQLI 176


>UniRef50_A9I0L2 Predicted thioredoxin n=6 Tax=Betaproteobacteria RepID=A9I0L2_BORPD
          Length = 164

 Score = 43.6 bits (101), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 20/176 (11%)

Query: 3   LRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVR 62
            + IL L  ++   + +   +      P +  T              KT++   L GKV 
Sbjct: 2   KKLILTLAVVVAAGIGAWFVWRPAPPAPDVAFT----------TIEGKTFSMHDLRGKVV 51

Query: 63  VLQHIAGRTSAKEKNATLIEAIKS-AKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNK 121
           +++  A  TS       +  AI +  +     Y+T  +            +V +  E+ K
Sbjct: 52  LVKFWA--TSCVTCVKQMPGAIDTYNEYAPKGYETVAV----AMSYDPPNYVLNFAETRK 105

Query: 122 KLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMD 177
             +P +   +D  G    ++   + +    ++DK GR+     G   P E    ++
Sbjct: 106 LPFPVA---LDVKGELARSFGDVKLTPTAFLIDKQGRIIKRYLGEYDPAEFHAAIE 158


>UniRef50_A8LCC7 Redoxin domain protein n=2 Tax=Frankia RepID=A8LCC7_FRASN
          Length = 209

 Score = 43.6 bits (101), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 41/142 (28%), Gaps = 11/142 (7%)

Query: 42  LDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVN 101
           +          + A L GK  V+   A   +        +  +                N
Sbjct: 79  MSGATLDGSQLDLASLRGKPVVVNFWASWCAPCRAETPGLVTLAGRNSDVAFVGVNEKDN 138

Query: 102 TDDAIPGSGMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQW 161
              A   +  F             +   + D  G     W +     +  VLD DGR+  
Sbjct: 139 ASSAKAFTRDF----------KVGYPSIV-DRLGTLAAGWPVAPGLPSTFVLDADGRIAA 187

Query: 162 AKDGALTPEEVQQVMDLLQKLL 183
              G + P E+  V++ L+  +
Sbjct: 188 RFTGGVLPAELTTVLERLRTEV 209


>UniRef50_C4ZMJ8 Redoxin domain protein n=1 Tax=Thauera sp. MZ1T RepID=C4ZMJ8_THASP
          Length = 165

 Score = 40.9 bits (94), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 11/139 (7%)

Query: 45  DQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDD 104
                +++ +A L GKV ++   A   +   K    ++A +              ++ D 
Sbjct: 34  STLQGQSFRTADLRGKVVLVNFWATTCTTCIKEMPALKATQEKFEARGYRTVAVAMDYD- 92

Query: 105 AIPGSGMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKD 164
                   V + +E +   +    F++D +G     ++    +    VLDK GR+     
Sbjct: 93  ----PPAQVAAFVERSALPF---TFVLDRDGSIARGFEGVRLTPTSYVLDKHGRIVQKIL 145

Query: 165 GALTPEEVQQVMDLLQKLL 183
           G     +  ++  LL++LL
Sbjct: 146 GEP---DFDKLHGLLEQLL 161


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.306    0.125    0.289 

Lambda     K      H
   0.267   0.0380    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,436,575
Number of Sequences: 3077464
Number of extensions: 11108119
Number of successful extensions: 56370
Number of sequences better than 1.0e-01: 27
Number of HSP's better than  0.1 without gapping: 57
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 56260
Number of HSP's gapped (non-prelim): 83
length of query: 184
length of database: 1,040,396,356
effective HSP length: 121
effective length of query: 63
effective length of database: 668,023,212
effective search space: 42085462356
effective search space used: 42085462356
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 88 (38.6 bits)
