Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	N	N	P	P	S	A	Q	I	K	P	G	E	Y	G	F	P	L	K	L	K	A	R	Y	D	N	F	I	G	G	E	W	V	A	P	A	D	G	E	Y	Y	Q	N	L	T	P	V	T	G	Q	L	L	C	E	V	A	S	S	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	R	D	I	D	L	A	L	D	A	A	H	K	V	K	D	K	W	A	H	T	S	V	Q	D	R	A	A	I	L	F	K	I	A	D	R	M	E	Q	N	L	E	L	L	A	T	A	E	T	W	D	N	G	K	P	I	R	E	T	S
Secondary structure
SS confidence
Disorder																					?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	A	D	V	P	L	A	I	D	H	F	R	Y	F	A	S	C	I	R	A	Q	E	G	G	I	S	E	V	D	S	E	T	V	A	Y	H	F	H	E	P	L	G	V	V	G	Q	I	I	P	W	N	F	P	L	L	M	A	S	W	K
Secondary structure
SS confidence
Disorder		?																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		M	A	P	A	L	A	A	G	N	C	V	V	L	K	P	A	R	L	T	P	L	S	V	L	L	L	M	E	I	V	G	D	L	L	P	P	G	V	V	N	V	V	N	G	A	G	G	V	I	G	E	Y	L	A	T	S	K	R	I	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		K	V	A	F	T	G	S	T	E	V	G	Q	Q	I	M	Q	Y	A	T	Q	N	I	I	P	V	T	L	E	L	G	G	K	S	P	N	I	F	F	A	D	V	M	D	E	E	D	A	F	F	D	K	A	L	E	G	F	A	L	F	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		F	N	Q	G	E	V	C	T	C	P	S	R	A	L	V	Q	E	S	I	Y	E	R	F	M	E	R	A	I	R	R	V	E	S	I	R	S	G	N	P	L	D	S	V	T	Q	M	G	A	Q	V	S	H	G	Q	L	E	T	I	L	N
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		Y	I	D	I	G	K	K	E	G	A	D	V	L	T	G	G	R	R	K	L	L	E	G	E	L	K	D	G	Y	Y	L	E	P	T	I	L	F	G	Q	N	N	M	R	V	F	Q	E	E	I	F	G	P	V	L	A	V	T	T	F	K
Secondary structure
SS confidence
Disorder																					?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		T	M	E	E	A	L	E	L	A	N	D	T	Q	Y	G	L	G	A	G	V	W	S	R	N	G	N	L	A	Y	K	M	G	R	G	I	Q	A	G	R	V	W	T	N	C	Y	H	A	Y	P	A	H	A	A	F	G	G	Y	K	Q	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Sequence		G	I	G	R	E	T	H	K	M	M	L	E	H	Y	Q	Q	T	K	C	L	L	V	S	Y	S	D	K	P	L	G	L	F
Secondary structure
SS confidence
Disorder																												?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3ed6 chain B Region: 22 - 512 Aligned: 484 Modelled: 485 Confidence: 100.0% Identity: 38% PDB header:oxidoreductase Chain: B: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: 1.7 angstrom resolution crystal structure of betaine aldehyde2 dehydrogenase (betb) from staphylococcus aureus Phyre2 PDB 1a4s chain A Region: 12 - 511 Aligned: 492 Modelled: 500 Confidence: 100.0% Identity: 35% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 1bxs chain A Region: 12 - 507 Aligned: 484 Modelled: 490 Confidence: 100.0% Identity: 39% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 2d4e chain B Region: 23 - 512 Aligned: 483 Modelled: 484 Confidence: 100.0% Identity: 39% PDB header:oxidoreductase Chain: B: PDB Molecule:5-carboxymethyl-2-hydroxymuconate semialdehyde PDBTitle: crystal structure of the hpcc from thermus thermophilus hb8 Phyre2 PDB 2ve5 chain H Region: 19 - 512 Aligned: 486 Modelled: 494 Confidence: 100.0% Identity: 36% PDB header:oxidoreductase Chain: H: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystallographic structure of betaine aldehyde2 dehydrogenase from pseudomonas aeruginosa Phyre2 PDB 1o9j chain A Region: 11 - 507 Aligned: 485 Modelled: 497 Confidence: 100.0% Identity: 38% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 3iwk chain B Region: 24 - 512 Aligned: 480 Modelled: 489 Confidence: 100.0% Identity: 40% PDB header:oxidoreductase Chain: B: PDB Molecule:aminoaldehyde dehydrogenase; PDBTitle: crystal structure of aminoaldehyde dehydrogenase 1 from2 pisum sativum (psamadh1) Phyre2 PDB 1o04 chain A Region: 12 - 507 Aligned: 484 Modelled: 496 Confidence: 100.0% Identity: 41% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 2o2q chain A Region: 19 - 504 Aligned: 476 Modelled: 480 Confidence: 100.0% Identity: 38% PDB header:oxidoreductase Chain: A: PDB Molecule:formyltetrahydrofolate dehydrogenase; PDBTitle: crystal structure of the c-terminal domain of rat2 10'formyltetrahydrofolate dehydrogenase in complex with nadp Phyre2 PDB 1wnd chain A Region: 24 - 504 Aligned: 471 Modelled: 478 Confidence: 100.0% Identity: 35% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 1ag8 chain A Region: 12 - 505 Aligned: 482 Modelled: 494 Confidence: 100.0% Identity: 41% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 2jg7 chain G Region: 3 - 509 Aligned: 487 Modelled: 501 Confidence: 100.0% Identity: 27% PDB header:oxidoreductase Chain: G: PDB Molecule:antiquitin; PDBTitle: crystal structure of seabream antiquitin and elucidation of2 its substrate specificity Phyre2 PDB 3r31 chain A Region: 18 - 505 Aligned: 480 Modelled: 482 Confidence: 100.0% Identity: 38% PDB header:oxidoreductase Chain: A: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystal structure of betaine aldehyde dehydrogenase from agrobacterium2 tumefaciens Phyre2 PDB 3i44 chain A Region: 23 - 502 Aligned: 472 Modelled: 480 Confidence: 100.0% Identity: 33% PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from bartonella2 henselae at 2.0a resolution Phyre2 PDB 3k2w chain D Region: 19 - 505 Aligned: 479 Modelled: 481 Confidence: 100.0% Identity: 34% PDB header:oxidoreductase Chain: D: PDB Molecule:betaine-aldehyde dehydrogenase; PDBTitle: crystal structure of betaine-aldehyde dehydrogenase from2 pseudoalteromonas atlantica t6c Phyre2 PDB 3rh9 chain A Region: 16 - 501 Aligned: 476 Modelled: 479 Confidence: 100.0% Identity: 29% PDB header:oxidoreductase Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase (nad(p)(+)); PDBTitle: the crystal structure of oxidoreductase from marinobacter aquaeolei Phyre2 PDB 3qan chain B Region: 18 - 505 Aligned: 474 Modelled: 479 Confidence: 100.0% Identity: 30% PDB header:oxidoreductase Chain: B: PDB Molecule:1-pyrroline-5-carboxylate dehydrogenase 1; PDBTitle: crystal structure of 1-pyrroline-5-carboxylate dehydrogenase from2 bacillus halodurans Phyre2 PDB 3ek1 chain C Region: 24 - 505 Aligned: 469 Modelled: 476 Confidence: 100.0% Identity: 34% PDB header:oxidoreductase Chain: C: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from brucella2 melitensis biovar abortus 2308 Phyre2 PDB 3b4w chain A Region: 21 - 505 Aligned: 475 Modelled: 485 Confidence: 100.0% Identity: 34% PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of mycobacterium tuberculosis aldehyde dehydrogenase2 complexed with nad+ Phyre2 PDB 1t90 chain B Region: 23 - 512 Aligned: 476 Modelled: 490 Confidence: 100.0% Identity: 31% PDB header:oxidoreductase Chain: B: PDB Molecule:probable methylmalonate-semialdehyde PDBTitle: crystal structure of methylmalonate semialdehyde2 dehydrogenase from bacillus subtilis Phyre2 1 c3ed6B_ 2 d1a4sa_ 3 d1bxsa_ 4 c2d4eB_ 5 c2ve5H_ 6 d1o9ja_ 7 c3iwkB_ 8 d1o04a_ 9 c2o2qA_ 10 d1wnda_ 11 d1ag8a_ 12 c2jg7G_ 13 c3r31A_ 14 c3i44A_ 15 c3k2wD_ 16 c3rh9A_ 17 c3qanB_ 18 c3ek1C_ 19 c3b4wA_ 20 c1t90B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3ed6B_ 100.0 38 PDB header:oxidoreductase Chain: B: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: 1.7 angstrom resolution crystal structure of betaine aldehyde2 dehydrogenase (betb) from staphylococcus aureus 2 d1a4sa_ 100.0 35 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 3 d1bxsa_ 100.0 39 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 4 c2d4eB_ 100.0 39 PDB header:oxidoreductase Chain: B: PDB Molecule:5-carboxymethyl-2-hydroxymuconate semialdehyde PDBTitle: crystal structure of the hpcc from thermus thermophilus hb8 5 c2ve5H_ 100.0 36 PDB header:oxidoreductase Chain: H: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystallographic structure of betaine aldehyde2 dehydrogenase from pseudomonas aeruginosa 6 d1o9ja_ 100.0 38 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 7 c3iwkB_ 100.0 40 PDB header:oxidoreductase Chain: B: PDB Molecule:aminoaldehyde dehydrogenase; PDBTitle: crystal structure of aminoaldehyde dehydrogenase 1 from2 pisum sativum (psamadh1) 8 d1o04a_ 100.0 41 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 9 c2o2qA_ 100.0 38 PDB header:oxidoreductase Chain: A: PDB Molecule:formyltetrahydrofolate dehydrogenase; PDBTitle: crystal structure of the c-terminal domain of rat2 10'formyltetrahydrofolate dehydrogenase in complex with nadp 10 d1wnda_ 100.0 35 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 11 d1ag8a_ 100.0 41 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 12 c2jg7G_ 100.0 27 PDB header:oxidoreductase Chain: G: PDB Molecule:antiquitin; PDBTitle: crystal structure of seabream antiquitin and elucidation of2 its substrate specificity 13 c3r31A_ 100.0 38 PDB header:oxidoreductase Chain: A: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystal structure of betaine aldehyde dehydrogenase from agrobacterium2 tumefaciens 14 c3i44A_ 100.0 33 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from bartonella2 henselae at 2.0a resolution 15 c3k2wD_ 100.0 34 PDB header:oxidoreductase Chain: D: PDB Molecule:betaine-aldehyde dehydrogenase; PDBTitle: crystal structure of betaine-aldehyde dehydrogenase from2 pseudoalteromonas atlantica t6c 16 c3rh9A_ 100.0 29 PDB header:oxidoreductase Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase (nad(p)(+)); PDBTitle: the crystal structure of oxidoreductase from marinobacter aquaeolei 17 c3qanB_ 100.0 30 PDB header:oxidoreductase Chain: B: PDB Molecule:1-pyrroline-5-carboxylate dehydrogenase 1; PDBTitle: crystal structure of 1-pyrroline-5-carboxylate dehydrogenase from2 bacillus halodurans 18 c3ek1C_ 100.0 34 PDB header:oxidoreductase Chain: C: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from brucella2 melitensis biovar abortus 2308 19 c3b4wA_ 100.0 34 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of mycobacterium tuberculosis aldehyde dehydrogenase2 complexed with nad+ 20 c1t90B_ 100.0 31 PDB header:oxidoreductase Chain: B: PDB Molecule:probable methylmalonate-semialdehyde PDBTitle: crystal structure of methylmalonate semialdehyde2 dehydrogenase from bacillus subtilis 21 c3ifgH_ not modelled 100.0 33 PDB header:oxidoreductase Chain: H: PDB Molecule:succinate-semialdehyde dehydrogenase (nadp+); PDBTitle: crystal structure of succinate-semialdehyde dehydrogenase from2 burkholderia pseudomallei, part 1 of 2 22 d1uzba_ not modelled 100.0 34 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 23 c3jz4C_ not modelled 100.0 33 PDB header:oxidoreductase Chain: C: PDB Molecule:succinate-semialdehyde dehydrogenase [nadp+]; PDBTitle: crystal structure of e. coli nadp dependent enzyme 24 d1euha_ not modelled 100.0 29 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 25 c2w8qA_ not modelled 100.0 31 PDB header:oxidoreductase Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase, PDBTitle: the crystal structure of human ssadh in complex with ssa. 26 d1ky8a_ not modelled 100.0 29 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 27 c2hg2A_ not modelled 100.0 33 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase a; PDBTitle: structure of lactaldehyde dehydrogenase 28 c3prlD_ not modelled 100.0 31 PDB header:oxidoreductase Chain: D: PDB Molecule:nadp-dependent glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of nadp-dependent glyceraldehyde-3-phosphate2 dehydrogenase from bacillus halodurans c-125 29 d1bi9a_ not modelled 100.0 42 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 30 c3ju8B_ not modelled 100.0 28 PDB header:oxidoreductase Chain: B: PDB Molecule:succinylglutamic semialdehyde dehydrogenase; PDBTitle: crystal structure of succinylglutamic semialdehyde dehydrogenase from2 pseudomonas aeruginosa. 31 c2vroB_ not modelled 100.0 23 PDB header:oxidoreductase Chain: B: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from2 burkholderia xenovorans lb400 32 c3hazA_ not modelled 100.0 27 PDB header:oxidoreductase Chain: A: PDB Molecule:proline dehydrogenase; PDBTitle: crystal structure of bifunctional proline utilization a2 (puta) protein 33 c3rosA_ not modelled 100.0 27 PDB header:oxidoreductase Chain: A: PDB Molecule:nad-dependent aldehyde dehydrogenase; PDBTitle: crystal structure of nad-dependent aldehyde dehydrogenase from2 lactobacillus acidophilus 34 c3efvC_ not modelled 100.0 30 PDB header:oxidoreductase Chain: C: PDB Molecule:putative succinate-semialdehyde dehydrogenase; PDBTitle: crystal structure of a putative succinate-semialdehyde dehydrogenase2 from salmonella typhimurium lt2 with bound nad 35 c3r64A_ not modelled 100.0 32 PDB header:oxidoreductase Chain: A: PDB Molecule:nad dependent benzaldehyde dehydrogenase; PDBTitle: crystal structure of a nad-dependent benzaldehyde dehydrogenase from2 corynebacterium glutamicum 36 c3pqaA_ not modelled 100.0 32 PDB header:oxidoreductase Chain: A: PDB Molecule:lactaldehyde dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase gapn2 from methanocaldococcus jannaschii dsm 2661 37 d1ad3a_ not modelled 100.0 27 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 38 c3v4cB_ not modelled 100.0 24 PDB header:oxidoreductase Chain: B: PDB Molecule:aldehyde dehydrogenase (nadp+); PDBTitle: crystal structure of a semialdehyde dehydrogenase from sinorhizobium2 meliloti 1021 39 d1ez0a_ not modelled 100.0 20 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 40 c3lnsD_ not modelled 100.0 25 PDB header:oxidoreductase Chain: D: PDB Molecule:benzaldehyde dehydrogenase; PDBTitle: benzaldehyde dehydrogenase, a class 3 aldehyde dehydrogenase, with2 bound nadp+ and benzoate adduct 41 c3k9dD_ not modelled 100.0 21 PDB header:oxidoreductase Chain: D: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of probable aldehyde dehydrogenase from listeria2 monocytogenes egd-e 42 d1o20a_ not modelled 100.0 17 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 43 c3my7A_ not modelled 100.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:alcohol dehydrogenase/acetaldehyde dehydrogenase; PDBTitle: the crystal structure of the acdh domain of an alcohol dehydrogenase2 from vibrio parahaemolyticus to 2.25a 44 c2h5gA_ not modelled 100.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:delta 1-pyrroline-5-carboxylate synthetase; PDBTitle: crystal structure of human pyrroline-5-carboxylate synthetase 45 d1vlua_ not modelled 100.0 20 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 46 c1vluB_ not modelled 100.0 18 PDB header:oxidoreductase Chain: B: PDB Molecule:gamma-glutamyl phosphate reductase; PDBTitle: crystal structure of gamma-glutamyl phosphate reductase (yor323c) from2 saccharomyces cerevisiae at 2.40 a resolution 47 d1k75a_ not modelled 98.4 19 Fold:ALDH-like Superfamily:ALDH-like Family:L-histidinol dehydrogenase HisD 48 c2l69A_ not modelled 40.7 12 PDB header:de novo protein Chain: A: PDB Molecule:rossmann 2x3 fold protein; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or28 49 d1h6da1 not modelled 38.2 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 50 c3jtpB_ not modelled 35.1 21 PDB header:protein binding Chain: B: PDB Molecule:adapter protein meca 1; PDBTitle: crystal structure of the c-terminal domain of meca 51 c3f4lF_ not modelled 28.9 17 PDB header:oxidoreductase Chain: F: PDB Molecule:putative oxidoreductase yhhx; PDBTitle: crystal structure of a probable oxidoreductase yhhx in2 triclinic form. northeast structural genomics target er647 52 c3gfgB_ not modelled 23.7 10 PDB header:oxidoreductase Chain: B: PDB Molecule:uncharacterized oxidoreductase yvaa; PDBTitle: structure of putative oxidoreductase yvaa from bacillus subtilis in2 triclinic form 53 c2yukA_ not modelled 22.1 26 PDB header:transferase Chain: A: PDB Molecule:myeloid/lymphoid or mixed-lineage leukemia PDBTitle: solution structure of the hmg box of human myeloid/lymphoid2 or mixed-lineage leukemia protein 3 homolog 54 c2crjA_ not modelled 21.9 13 PDB header:gene regulation Chain: A: PDB Molecule:swi/snf-related matrix-associated actin- PDBTitle: solution structure of the hmg domain of mouse hmg domain2 protein hmgx2 55 d1k99a_ not modelled 21.3 8 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 56 d2ioja1 not modelled 19.5 19 Fold:MurF and HprK N-domain-like Superfamily:HprK N-terminal domain-like Family:DRTGG domain 57 c1v9nA_ not modelled 19.5 21 PDB header:oxidoreductase Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: structure of malate dehydrogenase from pyrococcus horikoshii ot3 58 c3moiA_ not modelled 19.2 8 PDB header:oxidoreductase Chain: A: PDB Molecule:probable dehydrogenase; PDBTitle: the crystal structure of the putative dehydrogenase from bordetella2 bronchiseptica rb50 59 d1j3xa_ not modelled 19.0 8 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 60 c1j3xA_ not modelled 19.0 8 PDB header:dna binding protein Chain: A: PDB Molecule:high mobility group protein 2; PDBTitle: solution structure of the n-terminal domain of the hmgb2 61 c2eqzA_ not modelled 18.9 8 PDB header:transcription Chain: A: PDB Molecule:high mobility group protein b3; PDBTitle: solution structure of the first hmg-box domain from high2 mobility group protein b3 62 c2ec4A_ not modelled 18.8 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fas-associated factor 1; PDBTitle: solution structure of the uas domain from human fas-2 associated factor 1 63 c3i0pA_ not modelled 18.7 23 PDB header:oxidoreductase Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of malate dehydrogenase from entamoeba histolytica 64 d1xrha_ not modelled 18.2 16 Fold:L-sulfolactate dehydrogenase-like Superfamily:L-sulfolactate dehydrogenase-like Family:L-sulfolactate dehydrogenase-like 65 c3fghA_ not modelled 17.7 11 PDB header:transcription Chain: A: PDB Molecule:transcription factor a, mitochondrial; PDBTitle: human mitochondrial transcription factor a box b 66 c1vjtA_ not modelled 17.6 12 PDB header:hydrolase Chain: A: PDB Molecule:alpha-glucosidase; PDBTitle: crystal structure of alpha-glucosidase (tm0752) from thermotoga2 maritima at 2.50 a resolution 67 c2v9vA_ not modelled 17.2 14 PDB header:transcription Chain: A: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: crystal structure of moorella thermoacetica selb(377-511) 68 c1zh8B_ not modelled 16.8 19 PDB header:oxidoreductase Chain: B: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of oxidoreductase (tm0312) from thermotoga maritima2 at 2.50 a resolution 69 d1rfma_ not modelled 16.7 21 Fold:L-sulfolactate dehydrogenase-like Superfamily:L-sulfolactate dehydrogenase-like Family:L-sulfolactate dehydrogenase-like 70 c3e18A_ not modelled 16.1 10 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of nad-binding protein from listeria innocua 71 c3evnA_ not modelled 15.7 16 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family; PDBTitle: crystal structure of putative oxidoreductase from streptococcus2 agalactiae 2603v/r 72 c3m2tA_ not modelled 15.5 9 PDB header:oxidoreductase Chain: A: PDB Molecule:probable dehydrogenase; PDBTitle: the crystal structure of dehydrogenase from chromobacterium2 violaceum 73 c1xuzA_ not modelled 15.2 15 PDB header:biosynthetic protein Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac; PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol 74 c1ofgF_ not modelled 15.2 11 PDB header:oxidoreductase Chain: F: PDB Molecule:glucose-fructose oxidoreductase; PDBTitle: glucose-fructose oxidoreductase 75 c1h6dL_ not modelled 15.2 11 PDB header:protein translocation Chain: L: PDB Molecule:precursor form of glucose-fructose PDBTitle: oxidized precursor form of glucose-fructose oxidoreductase2 from zymomonas mobilis complexed with glycerol 76 c3ip3D_ not modelled 14.8 12 PDB header:oxidoreductase Chain: D: PDB Molecule:oxidoreductase, putative; PDBTitle: structure of putative oxidoreductase (tm_0425) from2 thermotoga maritima 77 c2nvwB_ not modelled 14.7 12 PDB header:transcription Chain: B: PDB Molecule:galactose/lactose metabolism regulatory protein PDBTitle: crystal sctucture of transcriptional regulator gal80p from2 kluyveromymes lactis 78 c1vbiA_ not modelled 14.4 25 PDB header:oxidoreductase Chain: A: PDB Molecule:type 2 malate/lactate dehydrogenase; PDBTitle: crystal structure of type 2 malate/lactate dehydrogenase from thermus2 thermophilus hb8 79 d1hsma_ not modelled 14.1 26 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 80 c2cs1A_ not modelled 14.0 16 PDB header:dna binding protein Chain: A: PDB Molecule:pms1 protein homolog 1; PDBTitle: solution structure of the hmg domain of human dna mismatch2 repair protein 81 d1vdha_ not modelled 14.0 14 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Chlorite dismutase-like 82 d1v64a_ not modelled 13.8 13 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 83 c3c2qA_ not modelled 13.6 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein; PDBTitle: crystal structure of conserved putative lor/sdh protein2 from methanococcus maripaludis s2 84 d1nxua_ not modelled 13.5 19 Fold:L-sulfolactate dehydrogenase-like Superfamily:L-sulfolactate dehydrogenase-like Family:L-sulfolactate dehydrogenase-like 85 c2glxD_ not modelled 13.5 14 PDB header:oxidoreductase Chain: D: PDB Molecule:1,5-anhydro-d-fructose reductase; PDBTitle: crystal structure analysis of bacterial 1,5-af reductase 86 c3uoeB_ not modelled 13.4 11 PDB header:oxidoreductase Chain: B: PDB Molecule:dehydrogenase; PDBTitle: the crystal structure of dehydrogenase from sinorhizobium meliloti 87 c3kuxA_ not modelled 13.4 9 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: structure of the ypo2259 putative oxidoreductase from yersinia pestis 88 d1t0tv_ not modelled 13.3 14 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Chlorite dismutase-like 89 d1uz5a3 not modelled 13.1 17 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 90 d1lwma_ not modelled 12.8 11 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 91 d1u2ca2 not modelled 12.6 14 Fold:Dystroglycan, domain 2 Superfamily:Dystroglycan, domain 2 Family:Dystroglycan, domain 2 92 d1v63a_ not modelled 12.0 11 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 93 d1hmfa_ not modelled 11.9 25 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 94 c1hmfA_ not modelled 11.9 25 PDB header:dna-binding Chain: A: PDB Molecule:high mobility group protein fragment-b; PDBTitle: structure of the hmg box motif in the b-domain of hmg1 95 c3oqbF_ not modelled 11.7 17 PDB header:oxidoreductase Chain: F: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase from bradyrhizobium2 japonicum usda 110 96 d1j46a_ not modelled 11.3 6 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 97 d1s7ia_ not modelled 11.2 16 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:DGPF domain (Pfam 04946) 98 d2lefa_ not modelled 11.1 11 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 99 c3bicA_ not modelled 10.9 14 PDB header:isomerase Chain: A: PDB Molecule:methylmalonyl-coa mutase, mitochondrial precursor; PDBTitle: crystal structure of human methylmalonyl-coa mutase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0