Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	Y	T	T	F	S	Q	T	K	N	D	Q	L	K	E	P	M	F	F	G	Q	P	V	N	V	A	R	Y	D	Q	Q	K	Y	D	I	F	E	K	L	I	E	K	Q	L	S	F	F	W	R	P	E	E	V	D	V	S	R	D	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	D	Y	Q	A	L	P	E	H	E	K	H	I	F	I	S	N	L	K	Y	Q	T	L	L	D	S	I	Q	G	R	S	P	N	V	A	L	L	P	L	I	S	I	P	E	L	E	T	W	V	E	T	W	A	F	S	E	T	I	H	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	S	Y	T	H	I	I	R	N	I	V	N	D	P	S	V	V	F	D	D	I	V	T	N	E	Q	I	Q	K	R	A	E	G	I	S	S	Y	Y	D	E	L	I	E	M	T	S	Y	W	H	L	L	G	E	G	T	H	T	V	N	G
Secondary structure
SS confidence
Disorder																																																?	?							?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		K	T	V	T	V	S	L	R	E	L	K	K	K	L	Y	L	C	L	M	S	V	N	A	L	E	A	I	R	F	Y	V	S	F	A	C	S	F	A	F	A	E	R	E	L	M	E	G	N	A	K	I	I	R	L	I	A	R	D	E	A
Secondary structure
SS confidence
Disorder		?			?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	H	L	T	G	T	Q	H	M	L	N	L	L	R	S	G	A	D	D	P	E	M	A	E	I	A	E	E	C	K	Q	E	C	Y	D	L	F	V	Q	A	A	Q	Q	E	K	D	W	A	D	Y	L	F	R	D	G	S	M	I	G	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		N	K	D	I	L	C	Q	Y	V	E	Y	I	T	N	I	R	M	Q	A	V	G	L	D	L	P	F	Q	T	R	S	N	P	I	P	W	I	N	T	W	L	V	S	D	N	V	Q	V	A	P	Q	E	V	E	V	S	S	Y	L	V	G
Secondary structure
SS confidence
Disorder																																										?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Sequence		Q	I	D	S	E	V	D	T	D	D	L	S	N	F	Q	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?					?				?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1yfd chain A Region: 2 - 341 Aligned: 340 Modelled: 340 Confidence: 100.0% Identity: 100% PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase 1 beta PDBTitle: crystal structure of the y122h mutant of ribonucleotide2 reductase r2 protein from e. coli Phyre2 PDB 1mxr chain A Region: 2 - 340 Aligned: 339 Modelled: 339 Confidence: 100.0% Identity: 100% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 1syy chain A Region: 8 - 336 Aligned: 306 Modelled: 312 Confidence: 100.0% Identity: 21% PDB header:replication,oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase beta chain; PDBTitle: crystal structure of the r2 subunit of ribonucleotide reductase from2 chlamydia trachomatis Phyre2 PDB 1syy chain A Region: 8 - 336 Aligned: 306 Modelled: 312 Confidence: 100.0% Identity: 21% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 2rcc chain C Region: 3 - 336 Aligned: 303 Modelled: 309 Confidence: 100.0% Identity: 24% PDB header:oxidoreductase Chain: C: PDB Molecule:ribonucleoside-diphosphate reductase subunit beta; PDBTitle: crystal structure of putative class i ribonucleotide reductase2 (np_241368.1) from bacillus halodurans at 1.90 a resolution Phyre2 PDB 1sms chain A Region: 13 - 359 Aligned: 293 Modelled: 307 Confidence: 100.0% Identity: 20% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 1jk0 chain A Region: 13 - 338 Aligned: 283 Modelled: 286 Confidence: 100.0% Identity: 24% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 1h0o chain A Region: 10 - 337 Aligned: 285 Modelled: 299 Confidence: 100.0% Identity: 27% PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase; PDBTitle: cobalt substitution of mouse r2 ribonucleotide reductase to2 model the reactive diferrous state Phyre2 PDB 1oqu chain C Region: 22 - 349 Aligned: 287 Modelled: 295 Confidence: 100.0% Identity: 26% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 1smq chain D Region: 13 - 338 Aligned: 278 Modelled: 297 Confidence: 100.0% Identity: 24% PDB header:oxidoreductase Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase small chain PDBTitle: structure of the ribonucleotide reductase rnr2 homodimer2 from saccharomyces cerevisiae Phyre2 PDB 1w68 chain A Region: 15 - 333 Aligned: 276 Modelled: 290 Confidence: 100.0% Identity: 28% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 1r2f chain A Region: 27 - 342 Aligned: 277 Modelled: 285 Confidence: 100.0% Identity: 24% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 3hf1 chain B Region: 15 - 340 Aligned: 283 Modelled: 286 Confidence: 100.0% Identity: 24% PDB header:oxidoreductase Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase subunit m2 PDBTitle: crystal structure of human p53r2 Phyre2 PDB 3dhz chain A domain 1 Region: 22 - 341 Aligned: 281 Modelled: 289 Confidence: 100.0% Identity: 26% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 1r2f chain B Region: 24 - 340 Aligned: 278 Modelled: 286 Confidence: 100.0% Identity: 24% PDB header:oxidoreductase Chain: B: PDB Molecule:protein (ribonucleotide reductase r2); PDBTitle: ribonucleotide reductase r2f protein from salmonella2 typhimurium Phyre2 PDB 2o1z chain A Region: 13 - 337 Aligned: 274 Modelled: 295 Confidence: 100.0% Identity: 24% PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase subunit r2; PDBTitle: plasmodium vivax ribonucleotide reductase subunit r22 (pv086155) Phyre2 PDB 1uzr chain A Region: 24 - 340 Aligned: 278 Modelled: 286 Confidence: 100.0% Identity: 26% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 2p1i chain A Region: 34 - 335 Aligned: 254 Modelled: 272 Confidence: 100.0% Identity: 26% PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase, small chain; PDBTitle: plasmodium yoelii ribonucleotide reductase subunit r2 (py03671) Phyre2 PDB 2vux chain B Region: 15 - 337 Aligned: 254 Modelled: 273 Confidence: 100.0% Identity: 28% PDB header:oxidoreductase Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase subunit m2 b; PDBTitle: human ribonucleotide reductase, subunit m2 b Phyre2 PDB 1jk0 chain B Region: 13 - 326 Aligned: 252 Modelled: 276 Confidence: 100.0% Identity: 21% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 5r1r chain E Region: 359 - 376 Aligned: 18 Modelled: 18 Confidence: 50.1% Identity: 100% PDB header:complex (oxidoreductase/peptide) Chain: E: PDB Molecule:ribonucleotide reductase r2 protein; PDBTitle: ribonucleotide reductase e441a mutant r1 protein from2 escherichia coli Phyre2 PDB 5r1r chain F Region: 359 - 376 Aligned: 18 Modelled: 18 Confidence: 50.1% Identity: 100% PDB header:complex (oxidoreductase/peptide) Chain: F: PDB Molecule:ribonucleotide reductase r2 protein; PDBTitle: ribonucleotide reductase e441a mutant r1 protein from2 escherichia coli Phyre2 PDB 5r1r chain D Region: 359 - 376 Aligned: 18 Modelled: 18 Confidence: 50.1% Identity: 100% PDB header:complex (oxidoreductase/peptide) Chain: D: PDB Molecule:ribonucleotide reductase r2 protein; PDBTitle: ribonucleotide reductase e441a mutant r1 protein from2 escherichia coli Phyre2 PDB 7r1r chain F Region: 359 - 376 Aligned: 18 Modelled: 18 Confidence: 50.1% Identity: 100% PDB header:complex (oxidoreductase/peptide) Chain: F: PDB Molecule:ribonucleotide reductase r2 protein; PDBTitle: ribonucleotide reductase e441q mutant r1 protein from2 escherichia coli Phyre2 PDB 6r1r chain D Region: 359 - 376 Aligned: 18 Modelled: 18 Confidence: 50.1% Identity: 100% PDB header:complex (oxidoreductase/peptide) Chain: D: PDB Molecule:ribonucleotide reductase r2 protein; PDBTitle: ribonucleotide reductase e441d mutant r1 protein from2 escherichia coli Phyre2 PDB 7r1r chain E Region: 359 - 376 Aligned: 18 Modelled: 18 Confidence: 50.1% Identity: 100% PDB header:complex (oxidoreductase/peptide) Chain: E: PDB Molecule:ribonucleotide reductase r2 protein; PDBTitle: ribonucleotide reductase e441q mutant r1 protein from2 escherichia coli Phyre2 1 c1yfdA_ 2 d1mxra_ 3 c1syyA_ 4 d1syya_ 5 c2rccC_ 6 d1smsa_ 7 d1jk0a_ 8 c1h0oA_ 9 d1oquc_ 10 c1smqD_ 11 d1w68a_ 12 d1r2fa_ 13 c3hf1B_ 14 d3dhza1 15 c1r2fB_ 16 c2o1zA_ 17 d1uzra_ 18 c2p1iA_ 19 c2vuxB_ 20 d1jk0b_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 c5r1rE_ 69 c5r1rF_ 70 c5r1rD_ 71 c7r1rF_ 72 c6r1rD_ 73 c7r1rE_ 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1yfdA_ 100.0 100 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase 1 beta PDBTitle: crystal structure of the y122h mutant of ribonucleotide2 reductase r2 protein from e. coli 2 d1mxra_ 100.0 100 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 3 c1syyA_ 100.0 21 PDB header:replication,oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase beta chain; PDBTitle: crystal structure of the r2 subunit of ribonucleotide reductase from2 chlamydia trachomatis 4 d1syya_ 100.0 21 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 5 c2rccC_ 100.0 24 PDB header:oxidoreductase Chain: C: PDB Molecule:ribonucleoside-diphosphate reductase subunit beta; PDBTitle: crystal structure of putative class i ribonucleotide reductase2 (np_241368.1) from bacillus halodurans at 1.90 a resolution 6 d1smsa_ 100.0 20 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 7 d1jk0a_ 100.0 24 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 8 c1h0oA_ 100.0 27 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase; PDBTitle: cobalt substitution of mouse r2 ribonucleotide reductase to2 model the reactive diferrous state 9 d1oquc_ 100.0 26 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 10 c1smqD_ 100.0 24 PDB header:oxidoreductase Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase small chain PDBTitle: structure of the ribonucleotide reductase rnr2 homodimer2 from saccharomyces cerevisiae 11 d1w68a_ 100.0 28 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 12 d1r2fa_ 100.0 24 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 13 c3hf1B_ 100.0 24 PDB header:oxidoreductase Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase subunit m2 PDBTitle: crystal structure of human p53r2 14 d3dhza1 100.0 26 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 15 c1r2fB_ 100.0 24 PDB header:oxidoreductase Chain: B: PDB Molecule:protein (ribonucleotide reductase r2); PDBTitle: ribonucleotide reductase r2f protein from salmonella2 typhimurium 16 c2o1zA_ 100.0 24 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase subunit r2; PDBTitle: plasmodium vivax ribonucleotide reductase subunit r22 (pv086155) 17 d1uzra_ 100.0 26 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 18 c2p1iA_ 100.0 26 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase, small chain; PDBTitle: plasmodium yoelii ribonucleotide reductase subunit r2 (py03671) 19 c2vuxB_ 100.0 28 PDB header:oxidoreductase Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase subunit m2 b; PDBTitle: human ribonucleotide reductase, subunit m2 b 20 d1jk0b_ 100.0 21 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 21 c3ee4A_ not modelled 100.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:probable ribonucleoside-diphosphate reductase; PDBTitle: r2-like ligand binding mn/fe oxidase from m. tuberculosis 22 d1mhyd_ not modelled 98.5 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 23 d2inca1 not modelled 98.5 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 24 c3dhiA_ not modelled 98.4 13 PDB header:oxidoreductase Chain: A: PDB Molecule:toluene 4-monooxygenase hydroxylase alpha subunit; PDBTitle: crystal structure of reduced toluene 4-monoxygenase hydroxylase2 complexed with effector protein 25 d1mtyd_ not modelled 98.1 9 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 26 d1za0a1 not modelled 97.4 19 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 27 c3pw1A_ not modelled 97.3 12 PDB header:oxidoreductase Chain: A: PDB Molecule:phenylacetic acid degradation protein paaa; PDBTitle: the phenylacetyl-coa monooxygenase paaac subcomplex with phenylacetyl-2 coa 28 d2incb1 not modelled 97.3 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 29 c3chtA_ not modelled 97.1 12 PDB header:oxidoreductase Chain: A: PDB Molecule:p-aminobenzoate n-oxygenase; PDBTitle: crystal structure of di-iron aurf with partially bound ligand 30 c3dhgB_ not modelled 97.0 13 PDB header:oxidoreductase Chain: B: PDB Molecule:toluene 4-monooxygenase hydroxylase beta subunit; PDBTitle: crystal struture of toluene 4-monoxygenase hydroxylase 31 c2innA_ not modelled 96.3 12 PDB header:oxidoreductase Chain: A: PDB Molecule:phenol hydroxylase component phn; PDBTitle: structure of the phenol hydroxyalse-regulatory protein2 complex 32 d1afra_ not modelled 96.2 15 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 33 d2oc5a1 not modelled 95.8 16 Fold:Ferritin-like Superfamily:Ferritin-like Family:PMT1231-like 34 d1j30a_ not modelled 94.1 21 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 35 d2fzfa1 not modelled 94.1 15 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 36 c2inpD_ not modelled 93.7 12 PDB header:oxidoreductase Chain: D: PDB Molecule:phenol hydroxylase component phl; PDBTitle: structure of the phenol hydroxylase-regulatory protein2 complex 37 d1lkoa1 not modelled 93.2 17 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 38 c2hr5B_ not modelled 93.0 13 PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form 39 d1nnqa1 not modelled 92.7 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 40 d1yv1a1 not modelled 91.8 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 41 c3qhbA_ not modelled 91.1 13 PDB header:metal transport Chain: A: PDB Molecule:symerythrin; PDBTitle: crystal structure of oxidized symerythrin from cyanophora paradoxa 42 c1yuzB_ not modelled 89.1 13 PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin 43 d1yuza1 not modelled 87.5 15 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 44 d1jkva_ not modelled 87.3 9 Fold:Ferritin-like Superfamily:Ferritin-like Family:Manganese catalase (T-catalase) 45 c1dvbA_ not modelled 87.2 18 PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin 46 c3pm5B_ not modelled 86.6 12 PDB header:oxidoreductase Chain: B: PDB Molecule:benzoyl-coa oxygenase component b; PDBTitle: crystal structure of boxb in mixed valent state with bound benzoyl-coa 47 d2cwla1 not modelled 83.5 8 Fold:Ferritin-like Superfamily:Ferritin-like Family:Manganese catalase (T-catalase) 48 c3bknB_ not modelled 82.4 15 PDB header:metal binding protein Chain: B: PDB Molecule:bacterioferritin; PDBTitle: the structure of mycobacterial bacterioferritin 49 d2htna1 not modelled 81.1 16 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 50 d2fkza1 not modelled 81.0 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 51 c3gvyC_ not modelled 79.6 13 PDB header:metal binding protein Chain: C: PDB Molecule:bacterioferritin; PDBTitle: crystal structure of bacterioferritin from r.sphaeroides 52 d1otka_ not modelled 79.1 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 53 c3ddeB_ not modelled 77.8 11 PDB header:unknown function Chain: B: PDB Molecule:tena/thi-4 protein, domain of unknown function with a heme PDBTitle: crystal structure of a domain of unknown function with a heme2 oxygenase-like fold (sden_3740) from shewanella denitrificans os2173 at 2.30 a resolution 54 c2qqyA_ not modelled 76.2 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sigma b operon; PDBTitle: crystal structure of ferritin like, diiron-carboxylate proteins from2 bacillus anthracis str. ames 55 d1nf4a_ not modelled 76.1 15 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 56 d1mhyb_ not modelled 71.3 6 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 57 c2rd3A_ not modelled 68.4 13 PDB header:hydrolase Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of tena homologue (hp1287) from2 helicobacter pylori 58 d1zpya1 not modelled 66.0 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:half-ferritin 59 d1jgca_ not modelled 63.6 11 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 60 c3qd8M_ not modelled 63.4 15 PDB header:metal binding protein Chain: M: PDB Molecule:probable bacterioferritin bfrb; PDBTitle: crystal structure of mycobacterium tuberculosis bfrb 61 c3oqlA_ not modelled 62.1 12 PDB header:transcription Chain: A: PDB Molecule:tena homolog; PDBTitle: crystal structure of a tena homolog (pspto1738) from pseudomonas2 syringae pv. tomato str. dc3000 at 2.54 a resolution 62 c3bvkC_ not modelled 60.1 13 PDB header:oxidoreductase Chain: C: PDB Molecule:ferritin; PDBTitle: structural basis for the iron uptake mechanism of helicobacter pylori2 ferritin 63 d1mfra_ not modelled 59.9 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 64 d1lb3a_ not modelled 59.1 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 65 d1r03a_ not modelled 59.1 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 66 c2qcxA_ not modelled 53.1 8 PDB header:hydrolase Chain: A: PDB Molecule:transcriptional activator tena; PDBTitle: crystal structure of bacillus subtilis tena y112f mutant complexed2 with formyl aminomethyl pyrimidine 67 c3qz3A_ not modelled 50.8 15 PDB header:oxidoreductase Chain: A: PDB Molecule:ferritin; PDBTitle: the crystal structure of ferritin from vibrio cholerae o1 biovar el2 tor str. n16961 68 c5r1rE_ 50.1 100 PDB header:complex (oxidoreductase/peptide) Chain: E: PDB Molecule:ribonucleotide reductase r2 protein; PDBTitle: ribonucleotide reductase e441a mutant r1 protein from2 escherichia coli 69 c5r1rF_ 50.1 100 PDB header:complex (oxidoreductase/peptide) Chain: F: PDB Molecule:ribonucleotide reductase r2 protein; PDBTitle: ribonucleotide reductase e441a mutant r1 protein from2 escherichia coli 70 c5r1rD_ 50.1 100 PDB header:complex (oxidoreductase/peptide) Chain: D: PDB Molecule:ribonucleotide reductase r2 protein; PDBTitle: ribonucleotide reductase e441a mutant r1 protein from2 escherichia coli 71 c7r1rF_ 50.1 100 PDB header:complex (oxidoreductase/peptide) Chain: F: PDB Molecule:ribonucleotide reductase r2 protein; PDBTitle: ribonucleotide reductase e441q mutant r1 protein from2 escherichia coli 72 c6r1rD_ 50.1 100 PDB header:complex (oxidoreductase/peptide) Chain: D: PDB Molecule:ribonucleotide reductase r2 protein; PDBTitle: ribonucleotide reductase e441d mutant r1 protein from2 escherichia coli 73 c7r1rE_ 50.1 100 PDB header:complex (oxidoreductase/peptide) Chain: E: PDB Molecule:ribonucleotide reductase r2 protein; PDBTitle: ribonucleotide reductase e441q mutant r1 protein from2 escherichia coli 74 c6r1rE_ not modelled 50.1 100 PDB header:complex (oxidoreductase/peptide) Chain: E: PDB Molecule:ribonucleotide reductase r2 protein; PDBTitle: ribonucleotide reductase e441d mutant r1 protein from2 escherichia coli 75 c7r1rD_ not modelled 50.1 100 PDB header:complex (oxidoreductase/peptide) Chain: D: PDB Molecule:ribonucleotide reductase r2 protein; PDBTitle: ribonucleotide reductase e441q mutant r1 protein from2 escherichia coli 76 c6r1rF_ not modelled 50.1 100 PDB header:complex (oxidoreductase/peptide) Chain: F: PDB Molecule:ribonucleotide reductase r2 protein; PDBTitle: ribonucleotide reductase e441d mutant r1 protein from2 escherichia coli 77 d2za7a1 not modelled 49.1 16 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 78 d1rcwa_ not modelled 49.0 9 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:PqqC-like 79 c3oqlB_ not modelled 48.8 11 PDB header:transcription Chain: B: PDB Molecule:tena homolog; PDBTitle: crystal structure of a tena homolog (pspto1738) from pseudomonas2 syringae pv. tomato str. dc3000 at 2.54 a resolution 80 d2oh3a1 not modelled 48.4 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:AMB4284-like 81 d1bg7a_ not modelled 46.8 17 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 82 d2ceia1 not modelled 43.9 15 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 83 c3oghB_ not modelled 43.0 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein ycie; PDBTitle: crystal structure of ycie protein from e. coli cft073, a member of2 ferritine-like superfamily of diiron-containing four-helix-bundle3 proteins 84 c3r2rA_ not modelled 41.2 15 PDB header:metal binding protein Chain: A: PDB Molecule:bacterioferritin; PDBTitle: 1.65a resolution structure of iron soaked ftna from pseudomonas2 aeruginosa (ph 6.0) 85 c2hz8A_ not modelled 40.6 23 PDB header:de novo protein Chain: A: PDB Molecule:de novo designed diiron protein; PDBTitle: qm/mm structure refined from nmr-structure of a single2 chain diiron protein 86 c3q4nA_ not modelled 39.8 9 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein mj0754; PDBTitle: crystal structure of hypothetical protein mj0754 from methanococcus2 jannaschii dsm 2661 87 c3fvbB_ not modelled 39.4 14 PDB header:metal binding protein Chain: B: PDB Molecule:bacterioferritin; PDBTitle: crystal structure of ferritin (bacterioferritin) from2 brucella melitensis 88 c2vzbA_ not modelled 39.2 11 PDB header:metal transport Chain: A: PDB Molecule:putative bacterioferritin-related protein; PDBTitle: a dodecameric thioferritin in the bacterial domain, characterization2 of the bacterioferritin-related protein from bacteroides fragilis 89 c3hl1B_ not modelled 38.9 15 PDB header:metal binding protein Chain: B: PDB Molecule:ferritin like protein; PDBTitle: crystal structure of a ferritin like protein (cc_0557) from2 caulobacter vibrioides at 1.95 a resolution 90 c3e6sD_ not modelled 36.2 11 PDB header:oxidoreductase Chain: D: PDB Molecule:ferritin; PDBTitle: crystal structure of ferritin soaked with iron from pseudo-2 nitzschia multiseries 91 d1s3qa1 not modelled 34.8 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 92 c2xavD_ not modelled 32.5 100 PDB header:oxidoreductase Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit PDBTitle: ribonucleotide reductase y731no2y and y730f modified r12 subunit of e. coli 93 c2xavE_ not modelled 32.5 100 PDB header:oxidoreductase Chain: E: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit PDBTitle: ribonucleotide reductase y731no2y and y730f modified r12 subunit of e. coli 94 c2xapE_ not modelled 32.5 100 PDB header:oxidoreductase Chain: E: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit PDBTitle: ribonucleotide reductase y731no2y modified r1 subunit of e.2 coli to 2.1 a resolution 95 c2xapF_ not modelled 32.5 100 PDB header:oxidoreductase Chain: F: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit PDBTitle: ribonucleotide reductase y731no2y modified r1 subunit of e.2 coli to 2.1 a resolution 96 c2xakF_ not modelled 32.5 100 PDB header:oxidoreductase Chain: F: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit PDBTitle: ribonucleotide reductase y730no2y modified r1 subunit of e.2 coli 97 c2xakD_ not modelled 32.5 100 PDB header:oxidoreductase Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit PDBTitle: ribonucleotide reductase y730no2y modified r1 subunit of e.2 coli 98 c2xaxE_ not modelled 32.5 100 PDB header:oxidoreductase Chain: E: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit PDBTitle: ribonucleotide reductase y730no2y and y731a modified r12 subunit of e. coli 99 c2xakE_ not modelled 32.5 100 PDB header:oxidoreductase Chain: E: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit PDBTitle: ribonucleotide reductase y730no2y modified r1 subunit of e.2 coli 100 c1r1rF_ not modelled 32.5 100 PDB header:oxidoreductase Chain: F: PDB Molecule:ribonucleotide reductase r2 protein; PDBTitle: ribonucleotide reductase r1 protein mutant y730f with a2 reduced active site from escherichia coli 101 c2x3sD_ not modelled 32.5 100 PDB header:oxidoreductase Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit PDBTitle: ribonucleotide reductase y730no2y and c439a modified r12 subunit of e. coli 102 c2x3iF_ not modelled 32.5 100 PDB header:oxidoreductase Chain: F: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit PDBTitle: ribonucleotide reductase y730no2y and y731a modified r12 subunit of e. coli 103 c2x1yF_ not modelled 32.5 100 PDB header:oxidoreductase Chain: F: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit PDBTitle: ribonucleotide reductase y731no2y modified r1 subunit of e.2 coli to 2.1 a resolution 104 c2xaxF_ not modelled 32.5 100 PDB header:oxidoreductase Chain: F: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit PDBTitle: ribonucleotide reductase y730no2y and y731a modified r12 subunit of e. coli 105 c2x33F_ not modelled 32.5 100 PDB header:oxidoreductase Chain: F: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit PDBTitle: ribonucleotide reductase y731no2y and y730f modified r12 subunit of e. coli 106 c2x3iD_ not modelled 32.5 100 PDB header:oxidoreductase Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit PDBTitle: ribonucleotide reductase y730no2y and y731a modified r12 subunit of e. coli 107 c4r1rE_ not modelled 32.5 100 PDB header:complex (oxidoreductase/peptide) Chain: E: PDB Molecule:ribonucleotide reductase r2 protein; PDBTitle: ribonucleotide reductase r1 protein with substrate, gdp and2 effector dttp from escherichia coli 108 c2x59E_ not modelled 32.5 100 PDB header:oxidoreductase Chain: E: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit PDBTitle: ribonucleotide reductase y730no2y and c439s modified r12 subunit of e. coli 109 c2x1yE_ not modelled 32.5 100 PDB header:oxidoreductase Chain: E: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit PDBTitle: ribonucleotide reductase y731no2y modified r1 subunit of e.2 coli to 2.1 a resolution 110 c1r1rD_ not modelled 32.5 100 PDB header:oxidoreductase Chain: D: PDB Molecule:ribonucleotide reductase r2 protein; PDBTitle: ribonucleotide reductase r1 protein mutant y730f with a2 reduced active site from escherichia coli 111 c2x33D_ not modelled 32.5 100 PDB header:oxidoreductase Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit PDBTitle: ribonucleotide reductase y731no2y and y730f modified r12 subunit of e. coli 112 c2x3sE_ not modelled 32.5 100 PDB header:oxidoreductase Chain: E: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit PDBTitle: ribonucleotide reductase y730no2y and c439a modified r12 subunit of e. coli 113 c2x0xF_ not modelled 32.5 100 PDB header:oxidoreductase Chain: F: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit PDBTitle: ribonucleotide reductase r1 subunit of e. coli to 2.3 a2 resolution 114 c2x1yD_ not modelled 32.5 100 PDB header:oxidoreductase Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit PDBTitle: ribonucleotide reductase y731no2y modified r1 subunit of e.2 coli to 2.1 a resolution 115 c4r1rF_ not modelled 32.5 100 PDB header:complex (oxidoreductase/peptide) Chain: F: PDB Molecule:ribonucleotide reductase r2 protein; PDBTitle: ribonucleotide reductase r1 protein with substrate, gdp and2 effector dttp from escherichia coli 116 c2xaxD_ not modelled 32.5 100 PDB header:oxidoreductase Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit PDBTitle: ribonucleotide reductase y730no2y and y731a modified r12 subunit of e. coli 117 c2xayD_ not modelled 32.5 100 PDB header:oxidoreductase Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit PDBTitle: ribonucleotide reductase y730no2y and c439a modified r12 subunit of e. coli 118 c2xapD_ not modelled 32.5 100 PDB header:oxidoreductase Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit PDBTitle: ribonucleotide reductase y731no2y modified r1 subunit of e.2 coli to 2.1 a resolution 119 c2x59F_ not modelled 32.5 100 PDB header:oxidoreductase Chain: F: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit PDBTitle: ribonucleotide reductase y730no2y and c439s modified r12 subunit of e. coli 120 c2x0zD_ not modelled 32.5 100 PDB header:oxidoreductase Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase 1 subunit PDBTitle: ribonucleotide reductase y730no2y modified r1 subunit of e.2 coli

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0