Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	Q	H	Q	S	A	D	N	S	Q	G	Q	L	Y	I	V	P	T	P	I	G	N	L	A	D	I	T	Q	R	A	L	E	V	L	Q	A	V	D	L	I	A	A	E	D	T	R	H	T	G	L	L	L	Q	H	F	G	I	N	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	L	F	A	L	H	D	H	N	E	Q	Q	K	A	E	T	L	L	A	K	L	Q	E	G	Q	N	I	A	L	V	S	D	A	G	T	P	L	I	N	D	P	G	Y	H	L	V	R	T	C	R	E	A	G	I	R	V	V	P	L	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	P	C	A	A	I	T	A	L	S	A	A	G	L	P	S	D	R	F	C	Y	E	G	F	L	P	A	K	S	K	G	R	R	D	A	L	K	A	I	E	A	E	P	R	T	L	I	F	Y	E	S	T	H	R	L	L	D	S	L	E
Secondary structure
SS confidence
Disorder																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		D	I	V	A	V	L	G	E	S	R	Y	V	V	L	A	R	E	L	T	K	T	W	E	T	I	H	G	A	P	V	G	E	L	L	A	W	V	K	E	D	E	N	R	R	K	G	E	M	V	L	I	V	E	G	H	K	A	Q	E	E
Secondary structure
SS confidence
Disorder																																									?																	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Sequence		D	L	P	A	D	A	L	R	T	L	A	L	L	Q	A	E	L	P	L	K	K	A	A	A	L	A	A	E	I	H	G	V	K	K	N	A	L	Y	K	Y	A	L	E	Q	Q	G
Secondary structure
SS confidence
Disorder		?	?	?												?	?	?	?																										?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3kwp chain A Region: 10 - 237 Aligned: 226 Modelled: 228 Confidence: 100.0% Identity: 49% PDB header:transferase Chain: A: PDB Molecule:predicted methyltransferase; PDBTitle: crystal structure of putative methyltransferase from lactobacillus2 brevis Phyre2 PDB 1cbf chain A Region: 8 - 237 Aligned: 227 Modelled: 230 Confidence: 100.0% Identity: 17% Fold: Tetrapyrrole methylase Superfamily: Tetrapyrrole methylase Family: Tetrapyrrole methylase Phyre2 PDB 1cbf chain A Region: 8 - 237 Aligned: 227 Modelled: 230 Confidence: 100.0% Identity: 17% PDB header:methyltransferase Chain: A: PDB Molecule:cobalt-precorrin-4 transmethylase; PDBTitle: the x-ray structure of a cobalamin biosynthetic enzyme, cobalt2 precorrin-4 methyltransferase, cbif Phyre2 PDB 1pjt chain B Region: 5 - 246 Aligned: 234 Modelled: 242 Confidence: 100.0% Identity: 20% PDB header:transferase/oxidoreductase/lyase Chain: B: PDB Molecule:siroheme synthase; PDBTitle: the structure of the ser128ala point-mutant variant of cysg,2 the multifunctional3 methyltransferase/dehydrogenase/ferrochelatase for4 siroheme synthesis Phyre2 PDB 2ybo chain A Region: 8 - 245 Aligned: 232 Modelled: 237 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: the x-ray structure of the sam-dependent uroporphyrinogen2 iii methyltransferase nire from pseudomonas aeruginosa in3 complex with sah Phyre2 PDB 1wyz chain A domain 1 Region: 11 - 233 Aligned: 210 Modelled: 223 Confidence: 100.0% Identity: 22% Fold: Tetrapyrrole methylase Superfamily: Tetrapyrrole methylase Family: Tetrapyrrole methylase Phyre2 PDB 1s4d chain A Region: 8 - 246 Aligned: 235 Modelled: 239 Confidence: 100.0% Identity: 15% Fold: Tetrapyrrole methylase Superfamily: Tetrapyrrole methylase Family: Tetrapyrrole methylase Phyre2 PDB 1pjq chain A domain 2 Region: 12 - 246 Aligned: 226 Modelled: 230 Confidence: 100.0% Identity: 20% Fold: Tetrapyrrole methylase Superfamily: Tetrapyrrole methylase Family: Tetrapyrrole methylase Phyre2 PDB 3ndc chain B Region: 13 - 240 Aligned: 219 Modelled: 228 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:precorrin-4 c(11)-methyltransferase; PDBTitle: crystal structure of precorrin-4 c11-methyltransferase from2 rhodobacter capsulatus Phyre2 PDB 2zvb chain A Region: 12 - 237 Aligned: 219 Modelled: 226 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:precorrin-3 c17-methyltransferase; PDBTitle: crystal structure of tt0207 from thermus thermophilus hb8 Phyre2 PDB 1va0 chain A domain 1 Region: 12 - 233 Aligned: 214 Modelled: 217 Confidence: 100.0% Identity: 14% Fold: Tetrapyrrole methylase Superfamily: Tetrapyrrole methylase Family: Tetrapyrrole methylase Phyre2 PDB 1wde chain A Region: 11 - 235 Aligned: 217 Modelled: 225 Confidence: 100.0% Identity: 18% Fold: Tetrapyrrole methylase Superfamily: Tetrapyrrole methylase Family: Tetrapyrrole methylase Phyre2 PDB 1ve2 chain A domain 1 Region: 11 - 246 Aligned: 217 Modelled: 235 Confidence: 100.0% Identity: 21% Fold: Tetrapyrrole methylase Superfamily: Tetrapyrrole methylase Family: Tetrapyrrole methylase Phyre2 PDB 3nut chain C Region: 11 - 236 Aligned: 214 Modelled: 225 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: C: PDB Molecule:precorrin-3 methylase; PDBTitle: crystal structure of the methyltransferase cobj Phyre2 PDB 3nd1 chain B Region: 12 - 233 Aligned: 212 Modelled: 219 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: B: PDB Molecule:precorrin-6a synthase/cobf protein; PDBTitle: crystal structure of precorrin-6a synthase from rhodobacter capsulatus Phyre2 PDB 2qbu chain A Region: 11 - 209 Aligned: 193 Modelled: 199 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:precorrin-2 methyltransferase; PDBTitle: crystal structure of methanothermobacter thermautotrophicus cbil Phyre2 PDB 2e0k chain A Region: 9 - 244 Aligned: 221 Modelled: 236 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:precorrin-2 c20-methyltransferase; PDBTitle: crystal structure of cbil, a methyltransferase involved in anaerobic2 vitamin b12 biosynthesis Phyre2 PDB 1vhv chain A Region: 14 - 235 Aligned: 217 Modelled: 222 Confidence: 100.0% Identity: 13% Fold: Tetrapyrrole methylase Superfamily: Tetrapyrrole methylase Family: Tetrapyrrole methylase Phyre2 PDB 2dek chain A domain 1 Region: 13 - 235 Aligned: 215 Modelled: 223 Confidence: 100.0% Identity: 21% Fold: Tetrapyrrole methylase Superfamily: Tetrapyrrole methylase Family: Tetrapyrrole methylase Phyre2 PDB 3i4t chain A Region: 14 - 238 Aligned: 213 Modelled: 225 Confidence: 100.0% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:diphthine synthase; PDBTitle: crystal structure of putative diphthine synthase from2 entamoeba histolytica Phyre2 PDB 2ezl chain A Region: 248 - 286 Aligned: 39 Modelled: 39 Confidence: 85.4% Identity: 21% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Recombinase DNA-binding domain Phyre2 1 c3kwpA_ 2 d1cbfa_ 3 c1cbfA_ 4 c1pjtB_ 5 c2yboA_ 6 d1wyza1 7 d1s4da_ 8 d1pjqa2 9 c3ndcB_ 10 c2zvbA_ 11 d1va0a1 12 d1wdea_ 13 d1ve2a1 14 c3nutC_ 15 c3nd1B_ 16 c2qbuA_ 17 c2e0kA_ 18 d1vhva_ 19 d2deka1 20 c3i4tA_ 21 22 23 24 25 26 d2ezla_ 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3kwpA_ 100.0 49 PDB header:transferase Chain: A: PDB Molecule:predicted methyltransferase; PDBTitle: crystal structure of putative methyltransferase from lactobacillus2 brevis 2 d1cbfa_ 100.0 17 Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase 3 c1cbfA_ 100.0 17 PDB header:methyltransferase Chain: A: PDB Molecule:cobalt-precorrin-4 transmethylase; PDBTitle: the x-ray structure of a cobalamin biosynthetic enzyme, cobalt2 precorrin-4 methyltransferase, cbif 4 c1pjtB_ 100.0 20 PDB header:transferase/oxidoreductase/lyase Chain: B: PDB Molecule:siroheme synthase; PDBTitle: the structure of the ser128ala point-mutant variant of cysg,2 the multifunctional3 methyltransferase/dehydrogenase/ferrochelatase for4 siroheme synthesis 5 c2yboA_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: the x-ray structure of the sam-dependent uroporphyrinogen2 iii methyltransferase nire from pseudomonas aeruginosa in3 complex with sah 6 d1wyza1 100.0 22 Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase 7 d1s4da_ 100.0 15 Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase 8 d1pjqa2 100.0 20 Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase 9 c3ndcB_ 100.0 17 PDB header:transferase Chain: B: PDB Molecule:precorrin-4 c(11)-methyltransferase; PDBTitle: crystal structure of precorrin-4 c11-methyltransferase from2 rhodobacter capsulatus 10 c2zvbA_ 100.0 21 PDB header:transferase Chain: A: PDB Molecule:precorrin-3 c17-methyltransferase; PDBTitle: crystal structure of tt0207 from thermus thermophilus hb8 11 d1va0a1 100.0 14 Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase 12 d1wdea_ 100.0 18 Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase 13 d1ve2a1 100.0 21 Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase 14 c3nutC_ 100.0 20 PDB header:transferase Chain: C: PDB Molecule:precorrin-3 methylase; PDBTitle: crystal structure of the methyltransferase cobj 15 c3nd1B_ 100.0 16 PDB header:transferase Chain: B: PDB Molecule:precorrin-6a synthase/cobf protein; PDBTitle: crystal structure of precorrin-6a synthase from rhodobacter capsulatus 16 c2qbuA_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:precorrin-2 methyltransferase; PDBTitle: crystal structure of methanothermobacter thermautotrophicus cbil 17 c2e0kA_ 100.0 21 PDB header:transferase Chain: A: PDB Molecule:precorrin-2 c20-methyltransferase; PDBTitle: crystal structure of cbil, a methyltransferase involved in anaerobic2 vitamin b12 biosynthesis 18 d1vhva_ 100.0 13 Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase 19 d2deka1 100.0 21 Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase 20 c3i4tA_ 100.0 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:diphthine synthase; PDBTitle: crystal structure of putative diphthine synthase from2 entamoeba histolytica 21 c2npnA_ not modelled 100.0 17 PDB header:transferase Chain: A: PDB Molecule:putative cobalamin synthesis related protein; PDBTitle: crystal structure of putative cobalamin synthesis related protein2 (cobf) from corynebacterium diphtheriae 22 c2bb3B_ not modelled 100.0 19 PDB header:transferase Chain: B: PDB Molecule:cobalamin biosynthesis precorrin-6y methylase (cbie); PDBTitle: crystal structure of cobalamin biosynthesis precorrin-6y methylase2 (cbie) from archaeoglobus fulgidus 23 d2bb3a1 not modelled 100.0 18 Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase 24 c3fq6A_ not modelled 100.0 40 PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: the crystal structure of a methyltransferase domain from bacteroides2 thetaiotaomicron vpi 25 c3hh1D_ not modelled 100.0 45 PDB header:transferase Chain: D: PDB Molecule:tetrapyrrole methylase family protein; PDBTitle: the structure of a tetrapyrrole methylase family protein domain from2 chlorobium tepidum tls 26 d2ezla_ 85.4 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 27 c2px0D_ not modelled 75.1 15 PDB header:biosynthetic protein Chain: D: PDB Molecule:flagellar biosynthesis protein flhf; PDBTitle: crystal structure of flhf complexed with gmppnp/mg(2+) 28 c3q3vA_ not modelled 73.8 20 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of phosphoglycerate kinase from campylobacter2 jejuni. 29 c1w78A_ not modelled 56.4 14 PDB header:synthase Chain: A: PDB Molecule:folc bifunctional protein; PDBTitle: e.coli folc in complex with dhpp and adp 30 c2z1dA_ not modelled 51.7 12 PDB header:metal binding protein Chain: A: PDB Molecule:hydrogenase expression/formation protein hypd; PDBTitle: crystal structure of [nife] hydrogenase maturation protein, hypd from2 thermococcus kodakaraensis 31 d1ii7a_ not modelled 51.2 20 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:DNA double-strand break repair nuclease 32 c3navB_ not modelled 44.0 12 PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961 33 c3bioB_ not modelled 42.3 18 PDB header:oxidoreductase Chain: B: PDB Molecule:oxidoreductase, gfo/idh/moca family; PDBTitle: crystal structure of oxidoreductase (gfo/idh/moca family member) from2 porphyromonas gingivalis w83 34 c3l7oB_ not modelled 40.2 15 PDB header:isomerase Chain: B: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from streptococcus2 mutans ua159 35 d1ptma_ not modelled 39.4 19 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:PdxA-like 36 c2q5cA_ not modelled 38.5 13 PDB header:transcription Chain: A: PDB Molecule:ntrc family transcriptional regulator; PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum 37 c2q7xA_ not modelled 36.3 17 PDB header:transferase Chain: A: PDB Molecule:upf0052 protein sp_1565; PDBTitle: crystal structure of a putative phospho transferase (sp_1565) from2 streptococcus pneumoniae tigr4 at 2.00 a resolution 38 c3av0A_ not modelled 35.3 16 PDB header:recombination Chain: A: PDB Molecule:dna double-strand break repair protein mre11; PDBTitle: crystal structure of mre11-rad50 bound to atp s 39 d1t9ba1 not modelled 34.4 14 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 40 d2hzba1 not modelled 34.4 10 Fold:CofD-like Superfamily:CofD-like Family:CofD-like 41 d1ybha1 not modelled 33.4 19 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 42 d1sc6a2 not modelled 33.4 17 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 43 d2d59a1 not modelled 33.4 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 44 d1xfia_ not modelled 32.9 18 Fold:AF1104-like Superfamily:AF1104-like Family:AF1104-like 45 c2l0kA_ not modelled 31.8 26 PDB header:transcription Chain: A: PDB Molecule:stage iii sporulation protein d; PDBTitle: nmr solution structure of a transcription factor spoiiid in complex2 with dna 46 c2z2uA_ not modelled 31.7 18 PDB header:metal binding protein Chain: A: PDB Molecule:upf0026 protein mj0257; PDBTitle: crystal structure of archaeal tyw1 47 d1gdha2 not modelled 30.2 17 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 48 d2naca2 not modelled 30.0 9 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 49 c3mvnA_ not modelled 29.7 14 PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamayl-medo- PDBTitle: crystal structure of a domain from a putative udp-n-acetylmuramate:l-2 alanyl-gamma-d-glutamayl-medo-diaminopimelate ligase from haemophilus3 ducreyi 35000hp 50 c3rhtB_ not modelled 29.3 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:(gatase1)-like protein; PDBTitle: crystal structure of type 1 glutamine amidotransferase (gatase1)-like2 protein from planctomyces limnophilus 51 d2z67a1 not modelled 29.0 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:SepSecS-like 52 d1v6ta_ not modelled 27.4 17 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like 53 d2o8ra3 not modelled 27.4 20 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 54 c3auzA_ not modelled 26.7 21 PDB header:recombination Chain: A: PDB Molecule:dna double-strand break repair protein mre11; PDBTitle: crystal structure of mre11 with manganese 55 d2gk3a1 not modelled 26.5 13 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:STM3548-like 56 d1xtoa_ not modelled 26.4 19 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Coenzyme PQQ synthesis protein B, PqqB 57 c1gqqA_ not modelled 25.0 18 PDB header:cell wall biosynthesis Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase; PDBTitle: murc - crystal structure of the apo-enzyme from haemophilus2 influenzae 58 d1jeyb2 not modelled 24.4 9 Fold:vWA-like Superfamily:vWA-like Family:Ku80 subunit N-terminal domain 59 d1f6ya_ not modelled 24.0 18 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Methyltetrahydrofolate-utiluzing methyltransferases 60 d1q6za1 not modelled 23.4 19 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 61 c3c19A_ not modelled 23.2 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mk0293; PDBTitle: crystal structure of protein mk0293 from methanopyrus kandleri av19 62 c3hl2D_ not modelled 22.7 17 PDB header:transferase Chain: D: PDB Molecule:o-phosphoseryl-trna(sec) selenium transferase; PDBTitle: the crystal structure of the human sepsecs-trnasec complex 63 c2q8uA_ not modelled 22.7 14 PDB header:hydrolase Chain: A: PDB Molecule:exonuclease, putative; PDBTitle: crystal structure of mre11 from thermotoga maritima msb8 (tm1635) at2 2.20 a resolution 64 d1ad1a_ not modelled 22.6 12 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 65 d1ygya2 not modelled 22.3 17 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 66 c2nacA_ not modelled 22.3 10 PDB header:oxidoreductase(aldehyde(d),nad+(a)) Chain: A: PDB Molecule:nad-dependent formate dehydrogenase; PDBTitle: high resolution structures of holo and apo formate dehydrogenase 67 c1z4hA_ not modelled 22.1 13 PDB header:protein binding, dna binding protein Chain: A: PDB Molecule:tor inhibition protein; PDBTitle: the response regulator tori belongs to a new family of2 atypical excisionase 68 c3dmdA_ not modelled 21.7 18 PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle receptor; PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus 69 c3cf4G_ not modelled 21.5 13 PDB header:oxidoreductase Chain: G: PDB Molecule:acetyl-coa decarboxylase/synthase epsilon subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex 70 d1qbjc_ not modelled 21.2 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 71 d1iuka_ not modelled 21.1 32 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 72 c3iwpK_ not modelled 20.9 13 PDB header:metal binding protein Chain: K: PDB Molecule:copper homeostasis protein cutc homolog; PDBTitle: crystal structure of human copper homeostasis protein cutc 73 d1t57a_ not modelled 20.7 11 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:MTH1675-like 74 c3g2bA_ not modelled 20.6 17 PDB header:biosynthetic protein Chain: A: PDB Molecule:coenzyme pqq synthesis protein d; PDBTitle: crystal structure of pqqd from xanthomonas campestris 75 c2yx0A_ not modelled 20.2 16 PDB header:metal binding protein Chain: A: PDB Molecule:radical sam enzyme; PDBTitle: crystal structure of p. horikoshii tyw1 76 d2jfga2 not modelled 20.0 21 Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain 77 d2djia1 not modelled 19.9 14 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 78 c3canA_ not modelled 19.4 21 PDB header:lyase activator Chain: A: PDB Molecule:pyruvate-formate lyase-activating enzyme; PDBTitle: crystal structure of a domain of pyruvate-formate lyase-activating2 enzyme from bacteroides vulgatus atcc 8482 79 c2qasA_ not modelled 19.2 20 PDB header:hydrolase activator Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of caulobacter crescentus sspb ortholog 80 c2ppvA_ not modelled 19.1 22 PDB header:transferase Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein belonging to the upf0052 (se_0549) from2 staphylococcus epidermidis atcc 12228 at 2.00 a resolution 81 c3qg5D_ not modelled 18.5 18 PDB header:hydrolase Chain: D: PDB Molecule:mre11; PDBTitle: the mre11:rad50 complex forms an atp dependent molecular clamp in dna2 double-strand break repair 82 d1jeya2 not modelled 18.4 14 Fold:vWA-like Superfamily:vWA-like Family:Ku70 subunit N-terminal domain 83 d1pvda1 not modelled 18.3 18 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 84 c3ecsD_ not modelled 18.2 11 PDB header:translation Chain: D: PDB Molecule:translation initiation factor eif-2b subunit PDBTitle: crystal structure of human eif2b alpha 85 d1p3y1_ not modelled 17.9 5 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 86 c3lqkA_ not modelled 17.8 15 PDB header:oxidoreductase Chain: A: PDB Molecule:dipicolinate synthase subunit b; PDBTitle: crystal structure of dipicolinate synthase subunit b from bacillus2 halodurans c 87 c2qazC_ not modelled 17.8 20 PDB header:hydrolase activator Chain: C: PDB Molecule:sspb protein; PDBTitle: structure of c. crescentus sspb ortholog 88 c3imkA_ not modelled 17.5 20 PDB header:metal binding protein Chain: A: PDB Molecule:putative molybdenum carrier protein; PDBTitle: crystal structure of putative molybdenum carrier protein (yp_461806.1)2 from syntrophus aciditrophicus sb at 1.45 a resolution 89 c2pjmA_ not modelled 16.8 18 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii 90 c3pfnB_ not modelled 16.6 12 PDB header:transferase Chain: B: PDB Molecule:nad kinase; PDBTitle: crystal structure of human nad kinase 91 c3oa2B_ not modelled 16.3 14 PDB header:oxidoreductase Chain: B: PDB Molecule:wbpb; PDBTitle: crystal structure of the wlba (wbpb) dehydrogenase from pseudomonas2 aeruginosa in complex with nad at 1.5 angstrom resolution 92 c1yirA_ not modelled 16.1 10 PDB header:transferase Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase 2; PDBTitle: crystal structure of a nicotinate phosphoribosyltransferase 93 d1t6t1_ not modelled 16.0 10 Fold:Toprim domain Superfamily:Toprim domain Family:Toprim domain 94 d1qgpa_ not modelled 16.0 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 95 d2ez9a1 not modelled 15.6 14 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 96 c1lc3A_ not modelled 15.5 13 PDB header:oxidoreductase Chain: A: PDB Molecule:biliverdin reductase a; PDBTitle: crystal structure of a biliverdin reductase enzyme-cofactor2 complex 97 d2gxba1 not modelled 15.1 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 98 d2dlda2 not modelled 15.0 20 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 99 d2q4qa1 not modelled 15.0 16 Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0