Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	G	F	P	I	A	H	I	F	H	P	S	I	P	P	M	H	A	V	V	N	N	H	N	R	N	I	D	Y	W	T	V	K	R	K	F	A	E	I	V	S	T	N	D	V	N	K	I	Y	S	I	S	N	E	L	R	R	V	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	A	I	T	A	L	N	F	Y	H	G	D	V	P	S	V	M	I	R	I	Q	P	E	N	M	S	P	F	I	I	D	I	S	T	G	E	H	D	D	Y	I	I	Q	T	L	D	V	G	T	F	A	P	F	G	E	Q	C	T	C	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Sequence		A	V	N	K	K	E	L	E	C	I	K	E	T	I	S	K	Y	C	A	K	F	T	R	K	E	A	I	L	T	P	L	V	H	F	N	K	T	S	I	T	S	D	C	W	Q	I	L	F	F	S	P	D	H	F	N	N	D	F	Y
Secondary structure
SS confidence
Disorder																																																								?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1tf5 chain A domain 1 Region: 15 - 95 Aligned: 74 Modelled: 81 Confidence: 39.8% Identity: 16% Fold: Pre-protein crosslinking domain of SecA Superfamily: Pre-protein crosslinking domain of SecA Family: Pre-protein crosslinking domain of SecA Phyre2 PDB 2ccf chain A Region: 36 - 59 Aligned: 19 Modelled: 19 Confidence: 35.1% Identity: 63% PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel configuration of pli e20s Phyre2 PDB 2cce chain A Region: 36 - 59 Aligned: 19 Modelled: 19 Confidence: 34.8% Identity: 63% PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: parallel configuration of pli e20s Phyre2 PDB 2cce chain B Region: 36 - 59 Aligned: 19 Modelled: 19 Confidence: 34.8% Identity: 63% PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: parallel configuration of pli e20s Phyre2 PDB 1uny chain A Region: 33 - 58 Aligned: 21 Modelled: 21 Confidence: 33.3% Identity: 52% PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles Phyre2 PDB 2rji chain B Region: 118 - 141 Aligned: 21 Modelled: 21 Confidence: 32.6% Identity: 33% PDB header:protein transport, cell invasion Chain: B: PDB Molecule:erythrocyte binding antigen 175; PDBTitle: malarial eba-175 region vi crystallographic structure2 reveals a kix-like binding interface Phyre2 PDB 1unz chain B Region: 33 - 58 Aligned: 21 Modelled: 21 Confidence: 30.3% Identity: 52% PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles Phyre2 PDB 1unz chain A Region: 33 - 58 Aligned: 21 Modelled: 21 Confidence: 30.3% Identity: 52% PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles Phyre2 PDB 1nkt chain A domain 1 Region: 15 - 95 Aligned: 74 Modelled: 81 Confidence: 29.0% Identity: 19% Fold: Pre-protein crosslinking domain of SecA Superfamily: Pre-protein crosslinking domain of SecA Family: Pre-protein crosslinking domain of SecA Phyre2 PDB 1unv chain A Region: 48 - 59 Aligned: 12 Modelled: 12 Confidence: 18.8% Identity: 58% PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles Phyre2 PDB 1unv chain B Region: 48 - 59 Aligned: 12 Modelled: 12 Confidence: 18.7% Identity: 58% PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles Phyre2 PDB 1u9g chain A Region: 48 - 59 Aligned: 12 Modelled: 12 Confidence: 18.7% Identity: 58% PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of k(8)l(9) Phyre2 PDB 1u9g chain B Region: 48 - 59 Aligned: 12 Modelled: 12 Confidence: 18.7% Identity: 58% PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of k(8)l(9) Phyre2 PDB 2co7 chain B domain 2 Region: 79 - 116 Aligned: 36 Modelled: 38 Confidence: 15.7% Identity: 22% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1env chain A Region: 33 - 61 Aligned: 24 Modelled: 24 Confidence: 15.3% Identity: 46% PDB header:viral protein Chain: A: PDB Molecule:hiv-1 envelope protein chimera consisting of a fragment of PDBTitle: atomic structure of the ectodomain from hiv-1 gp41 Phyre2 PDB 1gcm chain A Region: 36 - 59 Aligned: 19 Modelled: 19 Confidence: 14.7% Identity: 58% PDB header:transcription regulation Chain: A: PDB Molecule:gcn4p-ii; PDBTitle: gcn4 leucine zipper core mutant p-li Phyre2 PDB 1twf chain C domain 1 Region: 51 - 62 Aligned: 12 Modelled: 12 Confidence: 14.6% Identity: 50% Fold: DCoH-like Superfamily: RBP11-like subunits of RNA polymerase Family: RNA polymerase alpha subunit dimerisation domain Phyre2 PDB 2ag3 chain A Region: 33 - 59 Aligned: 20 Modelled: 27 Confidence: 14.5% Identity: 50% PDB header:de novo protein Chain: A: PDB Molecule:gcn4-pli; PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: substitution of the k(15)-l(16) amide with a triazole Phyre2 PDB 1gcl chain A Region: 36 - 59 Aligned: 19 Modelled: 19 Confidence: 14.4% Identity: 58% PDB header:leucine zipper Chain: A: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li Phyre2 PDB 1gcl chain B Region: 36 - 59 Aligned: 19 Modelled: 19 Confidence: 14.4% Identity: 58% PDB header:leucine zipper Chain: B: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li Phyre2 1 d1tf5a1 2 c2ccfA_ 3 c2cceA_ 4 c2cceB_ 5 c1unyA_ 6 c2rjiB_ 7 c1unzB_ 8 c1unzA_ 9 d1nkta1 10 c1unvA_ 11 c1unvB_ 12 c1u9gA_ 13 c1u9gB_ 14 d2co7b2 15 c1envA_ 16 c1gcmA_ 17 d1twfc1 18 c2ag3A_ 19 c1gclA_ 20 c1gclB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1tf5a1 39.8 16 Fold:Pre-protein crosslinking domain of SecA Superfamily:Pre-protein crosslinking domain of SecA Family:Pre-protein crosslinking domain of SecA 2 c2ccfA_ 35.1 63 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel configuration of pli e20s 3 c2cceA_ 34.8 63 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: parallel configuration of pli e20s 4 c2cceB_ 34.8 63 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: parallel configuration of pli e20s 5 c1unyA_ 33.3 52 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 6 c2rjiB_ 32.6 33 PDB header:protein transport, cell invasion Chain: B: PDB Molecule:erythrocyte binding antigen 175; PDBTitle: malarial eba-175 region vi crystallographic structure2 reveals a kix-like binding interface 7 c1unzB_ 30.3 52 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 8 c1unzA_ 30.3 52 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 9 d1nkta1 29.0 19 Fold:Pre-protein crosslinking domain of SecA Superfamily:Pre-protein crosslinking domain of SecA Family:Pre-protein crosslinking domain of SecA 10 c1unvA_ 18.8 58 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 11 c1unvB_ 18.7 58 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 12 c1u9gA_ 18.7 58 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of k(8)l(9) 13 c1u9gB_ 18.7 58 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of k(8)l(9) 14 d2co7b2 15.7 22 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 15 c1envA_ 15.3 46 PDB header:viral protein Chain: A: PDB Molecule:hiv-1 envelope protein chimera consisting of a fragment of PDBTitle: atomic structure of the ectodomain from hiv-1 gp41 16 c1gcmA_ 14.7 58 PDB header:transcription regulation Chain: A: PDB Molecule:gcn4p-ii; PDBTitle: gcn4 leucine zipper core mutant p-li 17 d1twfc1 14.6 50 Fold:DCoH-like Superfamily:RBP11-like subunits of RNA polymerase Family:RNA polymerase alpha subunit dimerisation domain 18 c2ag3A_ 14.5 50 PDB header:de novo protein Chain: A: PDB Molecule:gcn4-pli; PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: substitution of the k(15)-l(16) amide with a triazole 19 c1gclA_ 14.4 58 PDB header:leucine zipper Chain: A: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 20 c1gclB_ 14.4 58 PDB header:leucine zipper Chain: B: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 21 c1gclC_ not modelled 14.4 58 PDB header:leucine zipper Chain: C: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 22 c1gclD_ not modelled 14.4 58 PDB header:leucine zipper Chain: D: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 23 c1w5iA_ not modelled 13.2 58 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: aba does not affect topology of pli. 24 c1uo2A_ not modelled 13.2 58 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 25 c1uo2B_ not modelled 12.4 58 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 26 c1w5iB_ not modelled 12.4 58 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: aba does not affect topology of pli. 27 c1unyB_ not modelled 12.2 61 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 28 c1uo1A_ not modelled 12.0 58 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 29 c1uo1B_ not modelled 12.0 58 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 30 c1uo0B_ not modelled 12.0 58 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 31 c1uo0A_ not modelled 12.0 58 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 32 d1hc1a2 not modelled 11.6 28 Fold:Di-copper centre-containing domain Superfamily:Di-copper centre-containing domain Family:Hemocyanin middle domain 33 d1m98a1 not modelled 11.4 21 Fold:Orange carotenoid protein, N-terminal domain Superfamily:Orange carotenoid protein, N-terminal domain Family:Orange carotenoid protein, N-terminal domain 34 d1b4ub_ not modelled 11.3 14 Fold:Phosphorylase/hydrolase-like Superfamily:LigB-like Family:LigB-like 35 c1w5jA_ not modelled 11.0 53 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 36 c1w5jC_ not modelled 11.0 53 PDB header:four helix bundle Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 37 c1w5jB_ not modelled 11.0 53 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 38 c1w5jD_ not modelled 11.0 53 PDB header:four helix bundle Chain: D: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 39 d3bwuc2 not modelled 10.6 17 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 40 c1u9fA_ not modelled 9.9 59 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of k(15)l(16) 41 c2g7hA_ not modelled 9.9 15 PDB header:transferase Chain: A: PDB Molecule:methylated-dna--protein-cysteine PDBTitle: structure of an o6-methylguanine dna methyltransferase from2 methanococcus jannaschii (mj1529) 42 c1i6hC_ not modelled 9.8 50 PDB header:transcription/dna-rna hybrid Chain: C: PDB Molecule:dna-directed rna polymerase ii 45kd polypeptide; PDBTitle: rna polymerase ii elongation complex 43 c3howC_ not modelled 9.8 50 PDB header:transcription,transferase/dna/rna hybrid Chain: C: PDB Molecule:dna-directed rna polymerase ii subunit rpb3; PDBTitle: complete rna polymerase ii elongation complex iii with a t-u2 mismatch and a frayed rna 3'-uridine 44 d1llaa2 not modelled 9.7 28 Fold:Di-copper centre-containing domain Superfamily:Di-copper centre-containing domain Family:Hemocyanin middle domain 45 c1gcmB_ not modelled 9.4 52 PDB header:transcription regulation Chain: B: PDB Molecule:gcn4p-ii; PDBTitle: gcn4 leucine zipper core mutant p-li 46 c2eocA_ not modelled 9.4 20 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 3; PDBTitle: solution structure of the wgr domain from human poly [adp-2 ribose] polymerase-3 47 c1gcmC_ not modelled 9.0 52 PDB header:transcription regulation Chain: C: PDB Molecule:gcn4p-ii; PDBTitle: gcn4 leucine zipper core mutant p-li 48 c1u9fB_ not modelled 8.9 59 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of k(15)l(16) 49 c1u9fC_ not modelled 8.9 59 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of k(15)l(16) 50 c2pmzS_ not modelled 8.7 32 PDB header:translation, transferase Chain: S: PDB Molecule:dna-directed rna polymerase subunit d; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 51 c3efyB_ not modelled 8.2 38 PDB header:cell cycle Chain: B: PDB Molecule:cif (cell cycle inhibiting factor); PDBTitle: structure of the cyclomodulin cif from pathogenic2 escherichia coli 52 c1u9fD_ not modelled 8.2 59 PDB header:transcription Chain: D: PDB Molecule:general control protein gcn4; PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of k(15)l(16) 53 d1p5va2 not modelled 8.0 20 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 54 c1bdfC_ not modelled 7.8 40 PDB header:nucleotidyltransferase Chain: C: PDB Molecule:rna polymerase alpha subunit; PDBTitle: structure of escherichia coli rna polymerase alpha subunit2 n-terminal domain 55 d1l4ia2 not modelled 7.7 15 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 56 d1xsqa_ not modelled 7.5 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Ureidoglycolate hydrolase AllA 57 c3rrrM_ not modelled 7.4 78 PDB header:viral protein Chain: M: PDB Molecule:fusion glycoprotein f0; PDBTitle: structure of the rsv f protein in the post-fusion conformation 58 c1m98A_ not modelled 7.3 21 PDB header:unknown function Chain: A: PDB Molecule:orange carotenoid protein; PDBTitle: crystal structure of orange carotenoid protein 59 d2bdra1 not modelled 7.2 43 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Ureidoglycolate hydrolase AllA 60 c1uo3B_ not modelled 7.1 58 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 61 c3h0gO_ not modelled 7.1 46 PDB header:transcription Chain: O: PDB Molecule:dna-directed rna polymerase ii subunit rpb3; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 62 d2j2za2 not modelled 7.1 21 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 63 c1smyB_ not modelled 7.0 50 PDB header:transferase Chain: B: PDB Molecule:dna-directed rna polymerase alpha chain; PDBTitle: structural basis for transcription regulation by alarmone2 ppgpp 64 c1uo5B_ not modelled 6.9 58 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 65 c1uo5A_ not modelled 6.9 58 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 66 d1nbwa1 not modelled 6.7 35 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Swiveling domain of dehydratase reactivase alpha subunit Family:Swiveling domain of dehydratase reactivase alpha subunit 67 c2k21A_ not modelled 6.6 71 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c 68 c1untA_ not modelled 6.3 58 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 69 d1rpya_ not modelled 6.3 14 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 70 d1sisa_ not modelled 6.2 71 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Short-chain scorpion toxins 71 c1w5kB_ not modelled 6.0 47 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 72 c1w5kD_ not modelled 6.0 47 PDB header:four helix bundle Chain: D: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 73 c1w5kC_ not modelled 6.0 47 PDB header:four helix bundle Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 74 c1w5kA_ not modelled 6.0 47 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 75 c2r2vB_ not modelled 5.9 50 PDB header:de novo protein Chain: B: PDB Molecule:gcn4 leucine zipper; PDBTitle: sequence determinants of the topology of the lac repressor2 tetrameric coiled coil 76 c1untB_ not modelled 5.9 58 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 77 d1bcoa1 not modelled 5.8 23 Fold:mu transposase, C-terminal domain Superfamily:mu transposase, C-terminal domain Family:mu transposase, C-terminal domain 78 c1unuB_ not modelled 5.5 42 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 79 c1unuA_ not modelled 5.5 42 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 80 d1ugla_ not modelled 5.5 100 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Plant defensins

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0