Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	A	I	P	M	T	L	R	G	A	E	K	L	R	E	E	L	D	F	L	K	S	V	R	R	P	E	I	I	A	A	I	A	E	A	R	E	H	G	D	L	K	E	N	A	E	Y	H	A	A	R	E	Q	Q	G	F	C	E	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																																?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	I	K	D	I	E	A	K	L	S	N	A	Q	V	I	D	V	T	K	M	P	N	N	G	R	V	I	F	G	A	T	V	T	V	L	N	L	D	S	D	E	E	Q	T	Y	R	I	V	G	D	D	E	A	D	F	K	Q	N	L	I
Secondary structure
SS confidence
Disorder																			?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Sequence		S	V	N	S	P	I	A	R	G	L	I	G	K	E	E	D	D	V	V	V	I	K	T	P	G	G	E	V	E	F	E	V	I	K	V	E	Y	L
Secondary structure
SS confidence
Disorder																																							?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2p4v chain A Region: 1 - 158 Aligned: 156 Modelled: 158 Confidence: 100.0% Identity: 35% PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor greb; PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution Phyre2 PDB 1grj chain A Region: 2 - 158 Aligned: 151 Modelled: 157 Confidence: 100.0% Identity: 100% PDB header:transcription regulation Chain: A: PDB Molecule:grea protein; PDBTitle: grea transcript cleavage factor from escherichia coli Phyre2 PDB 2etn chain A Region: 2 - 156 Aligned: 151 Modelled: 155 Confidence: 100.0% Identity: 26% PDB header:transcription Chain: A: PDB Molecule:anti-cleavage anti-grea transcription factor PDBTitle: crystal structure of thermus aquaticus gfh1 Phyre2 PDB 3bmb chain B Region: 3 - 157 Aligned: 121 Modelled: 122 Confidence: 100.0% Identity: 25% PDB header:rna binding protein Chain: B: PDB Molecule:regulator of nucleoside diphosphate kinase; PDBTitle: crystal structure of a new rna polymerase interacting2 protein Phyre2 PDB 2pn0 chain D Region: 26 - 157 Aligned: 119 Modelled: 121 Confidence: 100.0% Identity: 29% PDB header:transcription Chain: D: PDB Molecule:prokaryotic transcription elongation factor PDBTitle: prokaryotic transcription elongation factor grea/greb from2 nitrosomonas europaea Phyre2 PDB 1grj chain A domain 1 Region: 2 - 79 Aligned: 78 Modelled: 78 Confidence: 99.9% Identity: 100% Fold: Long alpha-hairpin Superfamily: GreA transcript cleavage protein, N-terminal domain Family: GreA transcript cleavage protein, N-terminal domain Phyre2 PDB 2f23 chain A domain 1 Region: 2 - 76 Aligned: 74 Modelled: 75 Confidence: 99.9% Identity: 26% Fold: Long alpha-hairpin Superfamily: GreA transcript cleavage protein, N-terminal domain Family: GreA transcript cleavage protein, N-terminal domain Phyre2 PDB 2f23 chain A domain 2 Region: 81 - 156 Aligned: 76 Modelled: 76 Confidence: 99.9% Identity: 28% Fold: FKBP-like Superfamily: FKBP-like Family: GreA transcript cleavage factor, C-terminal domain Phyre2 PDB 1grj chain A domain 2 Region: 80 - 158 Aligned: 73 Modelled: 79 Confidence: 99.9% Identity: 100% Fold: FKBP-like Superfamily: FKBP-like Family: GreA transcript cleavage factor, C-terminal domain Phyre2 PDB 2etn chain A domain 2 Region: 81 - 156 Aligned: 76 Modelled: 76 Confidence: 99.9% Identity: 28% Fold: FKBP-like Superfamily: FKBP-like Family: GreA transcript cleavage factor, C-terminal domain Phyre2 PDB 3gty chain X Region: 56 - 156 Aligned: 91 Modelled: 101 Confidence: 95.2% Identity: 22% PDB header:chaperone/ribosomal protein Chain: X: PDB Molecule:trigger factor; PDBTitle: promiscuous substrate recognition in folding and assembly activities2 of the trigger factor chaperone Phyre2 PDB 1t11 chain A domain 3 Region: 56 - 144 Aligned: 80 Modelled: 89 Confidence: 88.4% Identity: 11% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 1w26 chain A domain 3 Region: 56 - 144 Aligned: 82 Modelled: 89 Confidence: 86.9% Identity: 12% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 1w26 chain B Region: 56 - 156 Aligned: 92 Modelled: 101 Confidence: 82.9% Identity: 16% PDB header:chaperone Chain: B: PDB Molecule:trigger factor; PDBTitle: trigger factor in complex with the ribosome forms a2 molecular cradle for nascent proteins Phyre2 PDB 1t11 chain A Region: 57 - 143 Aligned: 78 Modelled: 87 Confidence: 79.0% Identity: 12% PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: trigger factor Phyre2 PDB 1krh chain A domain 1 Region: 88 - 147 Aligned: 60 Modelled: 60 Confidence: 78.6% Identity: 15% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Riboflavin synthase domain-like Family: Ferredoxin reductase FAD-binding domain-like Phyre2 PDB 1l1p chain A Region: 81 - 156 Aligned: 76 Modelled: 76 Confidence: 73.8% Identity: 16% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 1qx4 chain A domain 1 Region: 91 - 151 Aligned: 61 Modelled: 61 Confidence: 63.5% Identity: 13% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Riboflavin synthase domain-like Family: Ferredoxin reductase FAD-binding domain-like Phyre2 PDB 1ndh chain A domain 1 Region: 74 - 151 Aligned: 77 Modelled: 78 Confidence: 59.5% Identity: 8% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Riboflavin synthase domain-like Family: Ferredoxin reductase FAD-binding domain-like Phyre2 PDB 2cnd chain A domain 1 Region: 88 - 150 Aligned: 63 Modelled: 63 Confidence: 58.3% Identity: 17% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Riboflavin synthase domain-like Family: Ferredoxin reductase FAD-binding domain-like Phyre2 1 c2p4vA_ 2 c1grjA_ 3 c2etnA_ 4 c3bmbB_ 5 c2pn0D_ 6 d1grja1 7 d2f23a1 8 d2f23a2 9 d1grja2 10 d2etna2 11 c3gtyX_ 12 d1t11a3 13 d1w26a3 14 c1w26B_ 15 c1t11A_ 16 d1krha1 17 d1l1pa_ 18 d1qx4a1 19 d1ndha1 20 d2cnda1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2p4vA_ 100.0 35 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor greb; PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution 2 c1grjA_ 100.0 100 PDB header:transcription regulation Chain: A: PDB Molecule:grea protein; PDBTitle: grea transcript cleavage factor from escherichia coli 3 c2etnA_ 100.0 26 PDB header:transcription Chain: A: PDB Molecule:anti-cleavage anti-grea transcription factor PDBTitle: crystal structure of thermus aquaticus gfh1 4 c3bmbB_ 100.0 25 PDB header:rna binding protein Chain: B: PDB Molecule:regulator of nucleoside diphosphate kinase; PDBTitle: crystal structure of a new rna polymerase interacting2 protein 5 c2pn0D_ 100.0 29 PDB header:transcription Chain: D: PDB Molecule:prokaryotic transcription elongation factor PDBTitle: prokaryotic transcription elongation factor grea/greb from2 nitrosomonas europaea 6 d1grja1 99.9 100 Fold:Long alpha-hairpin Superfamily:GreA transcript cleavage protein, N-terminal domain Family:GreA transcript cleavage protein, N-terminal domain 7 d2f23a1 99.9 26 Fold:Long alpha-hairpin Superfamily:GreA transcript cleavage protein, N-terminal domain Family:GreA transcript cleavage protein, N-terminal domain 8 d2f23a2 99.9 28 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 9 d1grja2 99.9 100 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 10 d2etna2 99.9 28 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 11 c3gtyX_ 95.2 22 PDB header:chaperone/ribosomal protein Chain: X: PDB Molecule:trigger factor; PDBTitle: promiscuous substrate recognition in folding and assembly activities2 of the trigger factor chaperone 12 d1t11a3 88.4 11 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 13 d1w26a3 86.9 12 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 14 c1w26B_ 82.9 16 PDB header:chaperone Chain: B: PDB Molecule:trigger factor; PDBTitle: trigger factor in complex with the ribosome forms a2 molecular cradle for nascent proteins 15 c1t11A_ 79.0 12 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: trigger factor 16 d1krha1 78.6 15 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 17 d1l1pa_ 73.8 16 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 18 d1qx4a1 63.5 13 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 19 d1ndha1 59.5 8 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 20 d2cnda1 58.3 17 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 21 c1zeqX_ not modelled 47.4 7 PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli 22 c2kw8A_ not modelled 45.6 18 PDB header:protein binding Chain: A: PDB Molecule:lpxtg-site transpeptidase family protein; PDBTitle: solution structure of bacillus anthracis sortase a (srta)2 transpeptidase 23 d1e32a3 not modelled 45.5 21 Fold:Cdc48 domain 2-like Superfamily:Cdc48 domain 2-like Family:Cdc48 domain 2-like 24 c2gpjA_ not modelled 43.9 17 PDB header:fad-binding protein Chain: A: PDB Molecule:siderophore-interacting protein; PDBTitle: crystal structure of a siderophore-interacting protein (sputcn32_0076)2 from shewanella putrefaciens cn-32 at 2.20 a resolution 25 c2kfwA_ not modelled 41.9 21 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase PDBTitle: solution structure of full-length slyd from e.coli 26 d1tvca1 not modelled 41.8 12 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 27 d1umka1 not modelled 41.6 11 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 28 c2dq0A_ not modelled 40.1 19 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of seryl-trna synthetase from pyrococcus2 horikoshii complexed with a seryl-adenylate analog 29 c3fn5B_ not modelled 39.3 10 PDB header:hydrolase Chain: B: PDB Molecule:sortase a; PDBTitle: crystal structure of sortase a (spy1154) from streptococcus2 pyogenes serotype m1 strain sf370 30 c3shwA_ not modelled 38.5 19 PDB header:cell adhesion Chain: A: PDB Molecule:tight junction protein zo-1; PDBTitle: crystal structure of zo-1 pdz3-sh3-guk supramodule complex with2 connexin-45 peptide 31 c3g5oA_ not modelled 38.5 26 PDB header:toxin/antitoxin Chain: A: PDB Molecule:uncharacterized protein rv2865; PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis 32 d1hxva_ not modelled 37.3 8 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 33 c1hxvA_ not modelled 37.3 8 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: ppiase domain of the mycoplasma genitalium trigger factor 34 d1t2wa_ not modelled 36.2 11 Fold:Sortase Superfamily:Sortase Family:Sortase 35 d1st6a4 not modelled 34.3 29 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 36 c2krgA_ not modelled 33.9 11 PDB header:signaling protein Chain: A: PDB Molecule:na(+)/h(+) exchange regulatory cofactor nhe-rf1; PDBTitle: solution structure of human sodium/ hydrogen exchange2 regulatory factor 1(150-358) 37 c3shuB_ not modelled 33.5 26 PDB header:cell adhesion Chain: B: PDB Molecule:tight junction protein zo-1; PDBTitle: crystal structure of zo-1 pdz3 38 d1fdra1 not modelled 33.2 14 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 39 d1gvha2 not modelled 32.7 17 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 40 c3o0pA_ not modelled 32.5 14 PDB header:transferase , hydrolase Chain: A: PDB Molecule:sortase family protein; PDBTitle: pilus-related sortase c of group b streptococcus 41 c3re9A_ not modelled 31.1 18 PDB header:transferase Chain: A: PDB Molecule:sortase-like protein; PDBTitle: crystal structure of sortasec1 from streptococcus suis 42 c2l55A_ not modelled 31.0 14 PDB header:metal binding protein Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans 43 c3cgnA_ not modelled 30.8 26 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: crystal structure of thermophilic slyd 44 c2pjhB_ not modelled 30.4 13 PDB header:transport protein Chain: B: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: strctural model of the p97 n domain- npl4 ubd complex 45 d1st6a3 not modelled 30.0 28 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 46 c3pr9A_ not modelled 29.2 8 PDB header:chaperone Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 47 c2kr7A_ not modelled 29.1 0 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase slyd; PDBTitle: solution structure of helicobacter pylori slyd 48 c2w1kB_ not modelled 28.8 19 PDB header:transferase Chain: B: PDB Molecule:putative sortase; PDBTitle: crystal structure of sortase c-3 (srtc-3) from2 streptococcus pneumoniae 49 d1dm9a_ not modelled 26.9 14 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Heat shock protein 15 kD 50 c1dm9A_ not modelled 26.9 14 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka PDBTitle: heat shock protein 15 kd 51 d2piaa1 not modelled 26.9 23 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 52 c2k8iA_ not modelled 26.8 23 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of e.coli slyd 53 c2xwgA_ not modelled 26.8 21 PDB header:hydrolase Chain: A: PDB Molecule:sortase; PDBTitle: crystal structure of sortase c-1 from actinomyces oris (formerly2 actinomyces naeslundii) 54 d2f5ya1 not modelled 26.5 19 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 55 c3k1rA_ not modelled 26.0 12 PDB header:structural protein Chain: A: PDB Molecule:harmonin; PDBTitle: structure of harmonin npdz1 in complex with the sam-pbm of2 sans 56 c3g66A_ not modelled 25.0 11 PDB header:transferase Chain: A: PDB Molecule:sortase c; PDBTitle: the crystal structure of streptococcus pneumoniae sortase c2 provides novel insights into catalysis as well as pilin3 substrate specificity 57 d2gp4a1 not modelled 24.7 11 Fold:The "swivelling" beta/beta/alpha domain Superfamily:LeuD/IlvD-like Family:IlvD/EDD C-terminal domain-like 58 d1t9fa_ not modelled 23.9 10 Fold:beta-Trefoil Superfamily:MIR domain Family:MIR domain 59 d1ep3b1 not modelled 23.4 15 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 60 d1uita_ not modelled 23.4 22 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 61 d1y7na1 not modelled 22.8 14 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 62 c3rccI_ not modelled 22.7 7 PDB header:hydrolase Chain: I: PDB Molecule:sortase srta; PDBTitle: crystal structure of the streptococcus agalactiae sortase a 63 c1cz5A_ not modelled 21.3 17 PDB header:hydrolase Chain: A: PDB Molecule:vcp-like atpase; PDBTitle: nmr structure of vat-n: the n-terminal domain of vat (vcp-2 like atpase of thermoplasma) 64 c3prdA_ not modelled 20.8 8 PDB header:chaperone, isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 65 c3u5cG_ not modelled 20.3 14 PDB header:ribosome Chain: G: PDB Molecule:40s ribosomal protein s6-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution 66 d1pina2 not modelled 20.3 12 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 67 d1fnda1 not modelled 19.3 24 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 68 c2piaA_ not modelled 18.1 12 PDB header:reductase Chain: A: PDB Molecule:phthalate dioxygenase reductase; PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s] 69 d2iv2x1 not modelled 18.0 13 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 70 c2vn1A_ not modelled 17.9 10 PDB header:isomerase Chain: A: PDB Molecule:70 kda peptidylprolyl isomerase; PDBTitle: crystal structure of the fk506-binding domain of plasmodium2 falciparum fkbp35 in complex with fk506 71 d1ix5a_ not modelled 17.9 17 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 72 d1sm4a1 not modelled 17.2 25 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 73 d2a6qa1 not modelled 16.9 21 Fold:YefM-like Superfamily:YefM-like Family:YefM-like 74 c2xznY_ not modelled 16.8 17 PDB header:ribosome Chain: Y: PDB Molecule:rps6e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 75 d2jioa1 not modelled 16.7 17 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 76 c1krhA_ not modelled 16.4 15 PDB header:oxidoreductase Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase; PDBTitle: x-ray stucture of benzoate dioxygenase reductase 77 c2gp4A_ not modelled 16.0 11 PDB header:lyase Chain: A: PDB Molecule:6-phosphogluconate dehydratase; PDBTitle: structure of [fes]cluster-free apo form of 6-phosphogluconate2 dehydratase from shewanella oneidensis 78 c2eehA_ not modelled 15.8 18 PDB header:metal binding protein Chain: A: PDB Molecule:pdz domain-containing protein 7; PDBTitle: solution structure of first pdz domain of pdz domain2 containing protein 7 79 c2z17A_ not modelled 15.7 26 PDB header:protein binding Chain: A: PDB Molecule:pleckstrin homology sec7 and coiled-coil domains- PDBTitle: crystal sturcture of pdz domain from human pleckstrin2 homology, sec7 80 d1vloa1 not modelled 15.3 15 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:Aminomethyltransferase beta-barrel domain Family:Aminomethyltransferase beta-barrel domain 81 c3rbjB_ not modelled 15.0 21 PDB header:hydrolase Chain: B: PDB Molecule:sortase family protein; PDBTitle: crystal structure of the lid-mutant of streptococcus agalactiae2 sortase c1 82 d1kshb_ not modelled 14.5 5 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:RhoGDI-like 83 c2l66B_ not modelled 14.4 15 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. 84 d1seta1 not modelled 13.6 16 Fold:Long alpha-hairpin Superfamily:tRNA-binding arm Family:Seryl-tRNA synthetase (SerRS) 85 d1qbea_ not modelled 13.6 22 Fold:RNA bacteriophage capsid protein Superfamily:RNA bacteriophage capsid protein Family:RNA bacteriophage capsid protein 86 d1kwaa_ not modelled 13.3 17 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 87 d1ogya1 not modelled 13.0 16 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 88 c2fug4_ not modelled 12.8 10 PDB header:oxidoreductase Chain: 4: PDB Molecule:nadh-quinone oxidoreductase chain 4; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 89 d2fug41 not modelled 12.8 10 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nqo4-like 90 d1gawa1 not modelled 12.7 33 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 91 d1qfja1 not modelled 12.7 16 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 92 d1q1ca1 not modelled 12.2 16 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 93 c2w1jB_ not modelled 12.0 14 PDB header:transferase Chain: B: PDB Molecule:putative sortase; PDBTitle: crystal structure of sortase c-1 (srtc-1) from2 streptococcus pneumoniae 94 c2d90A_ not modelled 11.9 18 PDB header:protein binding Chain: A: PDB Molecule:pdz domain containing protein 1; PDBTitle: solution structure of the third pdz domain of pdz domain2 containing protein 1 95 c2xzrA_ not modelled 11.4 32 PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors 96 d1vlfm1 not modelled 11.4 17 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 97 d1a8pa1 not modelled 11.3 18 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 98 d2bmwa1 not modelled 11.2 30 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 99 d1nbwa1 not modelled 10.6 62 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Swiveling domain of dehydratase reactivase alpha subunit Family:Swiveling domain of dehydratase reactivase alpha subunit

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0