Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionQ46800
DateThu Jan 5 12:34:23 GMT 2012
Unique Job IDa339770d4e879676

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1n62C_
Top template information
PDB header:oxidoreductase
Chain: C: PDB Molecule:carbon monoxide dehydrogenase medium chain;
PDBTitle: crystal structure of the mo,cu-co dehydrogenase (codh), n-2 butylisocyanide-bound state
Confidence and coverage
Confidence:100.0% Coverage: 97%
284 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MFDFASYHRAATLADAINLLADNPQAKLLAGGTDVLIQLHHHNDRYRHIVDIHNLAELRG
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Disorder  ??????
































?



















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   .........70.........80.........90.........100.........110.........120
Sequence  ITLAEDGSLRIGSATTFTQLIEDPITQRHLPALCAAATSIAGPQIRNVATYGGNICNGAT
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   .........130.........140.........150.........160.........170.........180
Sequence  SADSATPTLIYDAKLEIHSPRGVRFVPINGFHTGPGKVSLEHDEILVAFHFPPQPKEHAG
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?
















?


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?



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   .........190.........200.........210.........220.........230.........240
Sequence  SAHFKYAMRDAMDISTIGCAAHCRLDNGNFSELRLAFGVAAPTPIRCQHAEQTAQNAPLN
Secondary structure 















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?

















































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   .........250.........260.........270.........280.........290..
Sequence  LQTLEAISESVLQDVAPRSSWRASKEFRLHLIQTMTKKVISEAVAAAGGKLQ
Secondary structure 















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Disorder 
















?



























??????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1n62 chain C

3D model

Region: 1 - 287
Aligned: 284
Modelled: 286
Confidence: 100.0%
Identity: 28%
PDB header:oxidoreductase
Chain: C: PDB Molecule:carbon monoxide dehydrogenase medium chain;
PDBTitle: crystal structure of the mo,cu-co dehydrogenase (codh), n-2 butylisocyanide-bound state

Phyre2

PDB 3hrd chain C

3D model

Region: 1 - 288
Aligned: 285
Modelled: 288
Confidence: 100.0%
Identity: 30%
PDB header:oxidoreductase
Chain: C: PDB Molecule:nicotinate dehydrogenase fad-subunit;
PDBTitle: crystal structure of nicotinate dehydrogenase

Phyre2

PDB 1t3q chain F

3D model

Region: 1 - 287
Aligned: 282
Modelled: 284
Confidence: 100.0%
Identity: 28%
PDB header:oxidoreductase
Chain: F: PDB Molecule:quinoline 2-oxidoreductase medium subunit;
PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86

Phyre2

PDB 1ffu chain F

3D model

Region: 1 - 288
Aligned: 285
Modelled: 288
Confidence: 100.0%
Identity: 31%
PDB header:hydrolase
Chain: F: PDB Molecule:cutm, flavoprotein of carbon monoxide
PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor

Phyre2

PDB 1rm6 chain E

3D model

Region: 1 - 285
Aligned: 279
Modelled: 283
Confidence: 100.0%
Identity: 32%
PDB header:oxidoreductase
Chain: E: PDB Molecule:4-hydroxybenzoyl-coa reductase beta subunit;
PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica

Phyre2

PDB 1wyg chain A

3D model

Region: 6 - 288
Aligned: 281
Modelled: 283
Confidence: 100.0%
Identity: 24%
PDB header:oxidoreductase
Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase;
PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s)

Phyre2

PDB 2w3r chain G

3D model

Region: 5 - 292
Aligned: 282
Modelled: 284
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: G: PDB Molecule:xanthine dehydrogenase;
PDBTitle: crystal structure of xanthine dehydrogenase (desulfo form)2 from rhodobacter capsulatus in complex with hypoxanthine

Phyre2

PDB 3b9j chain J

3D model

Region: 5 - 288
Aligned: 282
Modelled: 284
Confidence: 100.0%
Identity: 24%
PDB header:oxidoreductase
Chain: J: PDB Molecule:xanthine oxidase;
PDBTitle: structure of xanthine oxidase with 2-hydroxy-6-methylpurine

Phyre2

PDB 3etr chain M

3D model

Region: 5 - 288
Aligned: 282
Modelled: 284
Confidence: 100.0%
Identity: 24%
PDB header:oxidoreductase
Chain: M: PDB Molecule:xanthine dehydrogenase/oxidase;
PDBTitle: crystal structure of xanthine oxidase in complex with2 lumazine

Phyre2

PDB 1ffv chain C domain 2

3D model

Region: 1 - 176
Aligned: 175
Modelled: 176
Confidence: 100.0%
Identity: 35%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CO dehydrogenase flavoprotein N-terminal domain-like

Phyre2

PDB 1n62 chain C domain 2

3D model

Region: 1 - 176
Aligned: 175
Modelled: 176
Confidence: 100.0%
Identity: 31%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CO dehydrogenase flavoprotein N-terminal domain-like

Phyre2

PDB 1t3q chain C domain 2

3D model

Region: 1 - 175
Aligned: 173
Modelled: 175
Confidence: 100.0%
Identity: 30%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CO dehydrogenase flavoprotein N-terminal domain-like

Phyre2

PDB 1rm6 chain B domain 2

3D model

Region: 1 - 173
Aligned: 171
Modelled: 173
Confidence: 100.0%
Identity: 40%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CO dehydrogenase flavoprotein N-terminal domain-like

Phyre2

PDB 1v97 chain A domain 6

3D model

Region: 6 - 176
Aligned: 170
Modelled: 171
Confidence: 100.0%
Identity: 25%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CO dehydrogenase flavoprotein N-terminal domain-like

Phyre2

PDB 3b9j chain B domain 2

3D model

Region: 3 - 176
Aligned: 173
Modelled: 174
Confidence: 100.0%
Identity: 24%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CO dehydrogenase flavoprotein N-terminal domain-like

Phyre2

PDB 1jro chain A domain 4

3D model

Region: 7 - 175
Aligned: 166
Modelled: 169
Confidence: 100.0%
Identity: 25%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CO dehydrogenase flavoprotein N-terminal domain-like

Phyre2

PDB 1v97 chain A domain 4

3D model

Region: 178 - 288
Aligned: 111
Modelled: 111
Confidence: 99.9%
Identity: 20%
Fold: CO dehydrogenase flavoprotein C-domain-like
Superfamily: CO dehydrogenase flavoprotein C-terminal domain-like
Family: CO dehydrogenase flavoprotein C-terminal domain-like

Phyre2

PDB 1jro chain A domain 3

3D model

Region: 180 - 289
Aligned: 110
Modelled: 110
Confidence: 99.9%
Identity: 26%
Fold: CO dehydrogenase flavoprotein C-domain-like
Superfamily: CO dehydrogenase flavoprotein C-terminal domain-like
Family: CO dehydrogenase flavoprotein C-terminal domain-like

Phyre2

PDB 1n62 chain C domain 1

3D model

Region: 178 - 287
Aligned: 109
Modelled: 110
Confidence: 99.9%
Identity: 22%
Fold: CO dehydrogenase flavoprotein C-domain-like
Superfamily: CO dehydrogenase flavoprotein C-terminal domain-like
Family: CO dehydrogenase flavoprotein C-terminal domain-like

Phyre2

PDB 1t3q chain C domain 1

3D model

Region: 180 - 287
Aligned: 107
Modelled: 108
Confidence: 99.9%
Identity: 23%
Fold: CO dehydrogenase flavoprotein C-domain-like
Superfamily: CO dehydrogenase flavoprotein C-terminal domain-like
Family: CO dehydrogenase flavoprotein C-terminal domain-like

Phyre2
1

c1n62C_
2

c3hrdC_
3

c1t3qF_
4

c1ffuF_
5

c1rm6E_
6

c1wygA_
7

c2w3rG_
8

c3b9jJ_
9

c3etrM_
10

d1ffvc2
11

d1n62c2
12

d1t3qc2
13

d1rm6b2
14

d1v97a6
15

d3b9jb2
16

d1jroa4
17

d1v97a4
18

d1jroa3
19

d1n62c1
20

d1t3qc1
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1n62C_



100.0 28 PDB header:oxidoreductase
Chain: C: PDB Molecule:carbon monoxide dehydrogenase medium chain;
PDBTitle: crystal structure of the mo,cu-co dehydrogenase (codh), n-2 butylisocyanide-bound state
2c3hrdC_



100.0 30 PDB header:oxidoreductase
Chain: C: PDB Molecule:nicotinate dehydrogenase fad-subunit;
PDBTitle: crystal structure of nicotinate dehydrogenase
3c1t3qF_



100.0 28 PDB header:oxidoreductase
Chain: F: PDB Molecule:quinoline 2-oxidoreductase medium subunit;
PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86
4c1ffuF_



100.0 31 PDB header:hydrolase
Chain: F: PDB Molecule:cutm, flavoprotein of carbon monoxide
PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor
5c1rm6E_



100.0 32 PDB header:oxidoreductase
Chain: E: PDB Molecule:4-hydroxybenzoyl-coa reductase beta subunit;
PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica
6c1wygA_



100.0 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase;
PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s)
7c2w3rG_



100.0 26 PDB header:oxidoreductase
Chain: G: PDB Molecule:xanthine dehydrogenase;
PDBTitle: crystal structure of xanthine dehydrogenase (desulfo form)2 from rhodobacter capsulatus in complex with hypoxanthine
8c3b9jJ_



100.0 24 PDB header:oxidoreductase
Chain: J: PDB Molecule:xanthine oxidase;
PDBTitle: structure of xanthine oxidase with 2-hydroxy-6-methylpurine
9c3etrM_



100.0 24 PDB header:oxidoreductase
Chain: M: PDB Molecule:xanthine dehydrogenase/oxidase;
PDBTitle: crystal structure of xanthine oxidase in complex with2 lumazine
10d1ffvc2



100.0 35 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CO dehydrogenase flavoprotein N-terminal domain-like
11d1n62c2



100.0 31 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CO dehydrogenase flavoprotein N-terminal domain-like
12d1t3qc2



100.0 30 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CO dehydrogenase flavoprotein N-terminal domain-like
13d1rm6b2



100.0 40 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CO dehydrogenase flavoprotein N-terminal domain-like
14d1v97a6



100.0 25 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CO dehydrogenase flavoprotein N-terminal domain-like
15d3b9jb2



100.0 24 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CO dehydrogenase flavoprotein N-terminal domain-like
16d1jroa4



100.0 25 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CO dehydrogenase flavoprotein N-terminal domain-like
17d1v97a4



99.9 20 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like
Family:CO dehydrogenase flavoprotein C-terminal domain-like
18d1jroa3



99.9 26 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like
Family:CO dehydrogenase flavoprotein C-terminal domain-like
19d1n62c1



99.9 22 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like
Family:CO dehydrogenase flavoprotein C-terminal domain-like
20d1t3qc1



99.9 23 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like
Family:CO dehydrogenase flavoprotein C-terminal domain-like
21d1ffvc1



not modelled 99.9 24 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like
Family:CO dehydrogenase flavoprotein C-terminal domain-like
22d1rm6b1



not modelled 99.9 18 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like
Family:CO dehydrogenase flavoprotein C-terminal domain-like
23c1hskA_



not modelled 97.9 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:udp-n-acetylenolpyruvoylglucosamine reductase;
PDBTitle: crystal structure of s. aureus murb
24c1mbbA_



not modelled 97.9 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:uridine diphospho-n-acetylenolpyruvylglucosamine
PDBTitle: oxidoreductase
25c3i99A_



not modelled 97.8 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:udp-n-acetylenolpyruvoylglucosamine reductase;
PDBTitle: the crystal structure of the udp-n-acetylenolpyruvoylglucosamine2 reductase from the vibrio cholerae o1 biovar tor
26c1zr6A_



not modelled 97.8 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:glucooligosaccharide oxidase;
PDBTitle: the crystal structure of an acremonium strictum glucooligosaccharide2 oxidase reveals a novel flavinylation
27c2wdwB_



not modelled 97.7 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative hexose oxidase;
PDBTitle: the native crystal structure of the primary hexose oxidase (2 dbv29) in antibiotic a40926 biosynthesis
28c2ipiD_



not modelled 97.5 12 PDB header:oxidoreductase
Chain: D: PDB Molecule:aclacinomycin oxidoreductase (aknox);
PDBTitle: crystal structure of aclacinomycin oxidoreductase
29c3fwaA_



not modelled 97.5 15 PDB header:flavoprotein
Chain: A: PDB Molecule:reticuline oxidase;
PDBTitle: structure of berberine bridge enzyme, c166a variant in complex with2 (s)-reticuline
30d1uxya1



not modelled 97.5 15 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain
31c2vfvA_



not modelled 97.4 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:xylitol oxidase;
PDBTitle: alditol oxidase from streptomyces coelicolor a3(2): complex2 with sulphite
32c2y3rC_



not modelled 97.3 14 PDB header:oxidoreductase
Chain: C: PDB Molecule:taml;
PDBTitle: structure of the tirandamycin-bound fad-dependent2 tirandamycin oxidase taml in p21 space group
33d1hska1



not modelled 97.3 16 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain
34c3d2hA_



not modelled 97.3 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:berberine bridge-forming enzyme;
PDBTitle: structure of berberine bridge enzyme from eschscholzia californica,2 monoclinic crystal form
35c2gquA_



not modelled 97.1 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:udp-n-acetylenolpyruvylglucosamine reductase;
PDBTitle: crystal structure of udp-n-acetylenolpyruvylglucosamine2 reductase (murb) from thermus caldophilus
36c3bw7A_



not modelled 96.9 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:cytokinin dehydrogenase 1;
PDBTitle: maize cytokinin oxidase/dehydrogenase complexed with the allenic2 cytokinin analog ha-1
37c3pm9A_



not modelled 96.9 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of a putative dehydrogenase (rpa1076) from2 rhodopseudomonas palustris cga009 at 2.57 a resolution
38c1f0xA_



not modelled 96.8 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:d-lactate dehydrogenase;
PDBTitle: crystal structure of d-lactate dehydrogenase, a peripheral2 membrane respiratory enzyme.
39c2uuvC_



not modelled 96.8 14 PDB header:transferase
Chain: C: PDB Molecule:alkyldihydroxyacetonephosphate synthase;
PDBTitle: alkyldihydroxyacetonephosphate synthase in p1
40d1f0xa2



not modelled 96.7 19 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:FAD-linked oxidases, N-terminal domain
41c3popD_



not modelled 96.5 23 PDB header:oxidoreductase
Chain: D: PDB Molecule:gilr oxidase;
PDBTitle: the crystal structure of gilr, an oxidoreductase that catalyzes the2 terminal step of gilvocarcin biosynthesis
42d2i0ka2



not modelled 96.4 15 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:FAD-linked oxidases, N-terminal domain
43c2bvfA_



not modelled 96.2 16 PDB header:oxidase
Chain: A: PDB Molecule:6-hydroxy-d-nicotine oxidase;
PDBTitle: crystal structure of 6-hydoxy-d-nicotine oxidase from2 arthrobacter nicotinovorans. crystal form 3 (p1)
44c2exrA_



not modelled 96.2 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:cytokinin dehydrogenase 7;
PDBTitle: x-ray structure of cytokinin oxidase/dehydrogenase (ckx)2 from arabidopsis thaliana at5g21482
45c1wveB_



not modelled 96.0 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:4-cresol dehydrogenase [hydroxylating]
PDBTitle: p-cresol methylhydroxylase: alteration of the structure of2 the flavoprotein subunit upon its binding to the3 cytochrome subunit
46c1i19B_



not modelled 95.8 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:cholesterol oxidase;
PDBTitle: crystal structure of cholesterol oxidase from b.sterolicum
47c3js8A_



not modelled 95.7 10 PDB header:oxidoreductase
Chain: A: PDB Molecule:cholesterol oxidase;
PDBTitle: solvent-stable cholesterol oxidase
48d1wvfa2



not modelled 95.5 15 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:FAD-linked oxidases, N-terminal domain
49c1ahuB_



not modelled 94.5 12 PDB header:flavoenzyme
Chain: B: PDB Molecule:vanillyl-alcohol oxidase;
PDBTitle: structure of the octameric flavoenzyme vanillyl-alcohol2 oxidase in complex with p-cresol
50d1w1oa2



not modelled 93.9 13 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:FAD-linked oxidases, N-terminal domain
51d1e8ga2



not modelled 92.8 10 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:FAD-linked oxidases, N-terminal domain
52d1x2ga1



not modelled 89.9 16 Fold:SufE/NifU
Superfamily:SufE/NifU
Family:SP1160 C-terminal domain-like
53d1vqza1



not modelled 89.6 2 Fold:SufE/NifU
Superfamily:SufE/NifU
Family:SP1160 C-terminal domain-like
54c2e5aA_



not modelled 75.4 9 PDB header:ligase
Chain: A: PDB Molecule:lipoyltransferase 1;
PDBTitle: crystal structure of bovine lipoyltransferase in complex2 with lipoyl-amp
55c1x2gB_



not modelled 75.0 18 PDB header:ligase
Chain: B: PDB Molecule:lipoate-protein ligase a;
PDBTitle: crystal structure of lipate-protein ligase a from2 escherichia coli
56d1su0b_



not modelled 69.2 14 Fold:SufE/NifU
Superfamily:SufE/NifU
Family:NifU/IscU domain
57d1li4a2



not modelled 67.0 13 Fold:Flavodoxin-like
Superfamily:Formate/glycerate dehydrogenase catalytic domain-like
Family:S-adenosylhomocystein hydrolase
58d1xjsa_



not modelled 65.7 13 Fold:SufE/NifU
Superfamily:SufE/NifU
Family:NifU/IscU domain
59c1vqzA_



not modelled 63.1 2 PDB header:ligase
Chain: A: PDB Molecule:lipoate-protein ligase, putative;
PDBTitle: crystal structure of a putative lipoate-protein ligase a (sp_1160)2 from streptococcus pneumoniae tigr4 at 1.99 a resolution
60c2yvsA_



not modelled 59.6 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:glycolate oxidase subunit glce;
PDBTitle: crystal structure of glycolate oxidase subunit glce from thermus2 thermophilus hb8
61d1v8ba2



not modelled 56.1 16 Fold:Flavodoxin-like
Superfamily:Formate/glycerate dehydrogenase catalytic domain-like
Family:S-adenosylhomocystein hydrolase
62c2qq4A_



not modelled 50.3 10 PDB header:metal binding protein
Chain: A: PDB Molecule:iron-sulfur cluster biosynthesis protein iscu;
PDBTitle: crystal structure of iron-sulfur cluster biosynthesis2 protein iscu (ttha1736) from thermus thermophilus hb8
63c3d64A_



not modelled 44.5 14 PDB header:hydrolase
Chain: A: PDB Molecule:adenosylhomocysteinase;
PDBTitle: crystal structure of s-adenosyl-l-homocysteine hydrolase from2 burkholderia pseudomallei
64c3dhyC_



not modelled 43.0 17 PDB header:hydrolase
Chain: C: PDB Molecule:adenosylhomocysteinase;
PDBTitle: crystal structures of mycobacterium tuberculosis s-adenosyl-l-2 homocysteine hydrolase in ternary complex with substrate and3 inhibitors
65c1v8bA_



not modelled 42.7 16 PDB header:hydrolase
Chain: A: PDB Molecule:adenosylhomocysteinase;
PDBTitle: crystal structure of a hydrolase
66c3oneA_



not modelled 41.1 16 PDB header:hydrolase/hydrolase substrate
Chain: A: PDB Molecule:adenosylhomocysteinase;
PDBTitle: crystal structure of lupinus luteus s-adenosyl-l-homocysteine2 hydrolase in complex with adenine
67d1wfza_



not modelled 35.9 13 Fold:SufE/NifU
Superfamily:SufE/NifU
Family:NifU/IscU domain
68d1r9pa_



not modelled 35.5 13 Fold:SufE/NifU
Superfamily:SufE/NifU
Family:NifU/IscU domain
69c3n58D_



not modelled 32.7 19 PDB header:hydrolase
Chain: D: PDB Molecule:adenosylhomocysteinase;
PDBTitle: crystal structure of s-adenosyl-l-homocysteine hydrolase from brucella2 melitensis in ternary complex with nad and adenosine, orthorhombic3 form
70d1frfl_



not modelled 31.7 13 Fold:HydB/Nqo4-like
Superfamily:HydB/Nqo4-like
Family:Nickel-iron hydrogenase, large subunit
71d1e3db_



not modelled 29.8 17 Fold:HydB/Nqo4-like
Superfamily:HydB/Nqo4-like
Family:Nickel-iron hydrogenase, large subunit
72d1wuil1



not modelled 28.0 13 Fold:HydB/Nqo4-like
Superfamily:HydB/Nqo4-like
Family:Nickel-iron hydrogenase, large subunit
73c2z7eB_



not modelled 25.8 9 PDB header:biosynthetic protein
Chain: B: PDB Molecule:nifu-like protein;
PDBTitle: crystal structure of aquifex aeolicus iscu with bound [2fe-2 2s] cluster
74c2wpnB_



not modelled 23.4 7 PDB header:oxidoreductase
Chain: B: PDB Molecule:periplasmic [nifese] hydrogenase, large subunit,
PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough
75d1yq9h1



not modelled 22.8 15 Fold:HydB/Nqo4-like
Superfamily:HydB/Nqo4-like
Family:Nickel-iron hydrogenase, large subunit
76c1h2aL_



not modelled 22.1 14 PDB header:oxidoreductase
Chain: L: PDB Molecule:hydrogenase;
PDBTitle: single crystals of hydrogenase from desulfovibrio vulgaris
77d1j3ka_



not modelled 20.1 24 Fold:Dihydrofolate reductase-like
Superfamily:Dihydrofolate reductase-like
Family:Dihydrofolate reductases
78c3ix9B_



not modelled 19.3 7 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrofolate reductase;
PDBTitle: crystal structure of streptococcus pneumoniae dihydrofolate2 reductase - sp9 mutant
79c3dg8B_



not modelled 18.8 24 PDB header:oxidoreductase, transferase
Chain: B: PDB Molecule:bifunctional dihydrofolate reductase-thymidylate
PDBTitle: quadruple mutant (n51i+c59r+s108n+i164l) plasmodium2 falciparum dihydrofolate reductase-thymidylate synthase3 (pfdhfr-ts) complexed with rjf670, nadph, and dump
80d2ji7a1



not modelled 18.7 17 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
81d1fmta1



not modelled 18.0 13 Fold:FMT C-terminal domain-like
Superfamily:FMT C-terminal domain-like
Family:Post formyltransferase domain
82c2blcA_



not modelled 17.7 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrofolate reductase-thymidylate synthase;
PDBTitle: sp21 double mutant p. vivax dihydrofolate reductase in2 complex with des-chloropyrimethamine
83c1zdrB_



not modelled 17.7 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrofolate reductase;
PDBTitle: dhfr from bacillus stearothermophilus
84d2qdya1



not modelled 17.5 20 Fold:Nitrile hydratase alpha chain
Superfamily:Nitrile hydratase alpha chain
Family:Nitrile hydratase alpha chain
85c2qyaA_



not modelled 17.4 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized conserved protein;
PDBTitle: crystal structure of an uncharacterized conserved protein2 from methanopyrus kandleri
86c1d4fD_



not modelled 14.8 14 PDB header:hydrolase
Chain: D: PDB Molecule:s-adenosylhomocysteine hydrolase;
PDBTitle: crystal structure of recombinant rat-liver d244e mutant s-2 adenosylhomocysteine hydrolase
87c3qyhG_



not modelled 14.5 11 PDB header:lyase
Chain: G: PDB Molecule:co-type nitrile hydratase alpha subunit;
PDBTitle: crystal structure of co-type nitrile hydratase beta-h71l from2 pseudomonas putida.
88d1ozha1



not modelled 14.2 17 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
89d2djia1



not modelled 13.8 26 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
90d1aoea_



not modelled 13.0 21 Fold:Dihydrofolate reductase-like
Superfamily:Dihydrofolate reductase-like
Family:Dihydrofolate reductases
91d1oj7a_



not modelled 12.8 18 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
92c2dyoB_



not modelled 12.3 56 PDB header:protein turnover/protein turnover
Chain: B: PDB Molecule:autophagy protein 16;
PDBTitle: the crystal structure of saccharomyces cerevisiae atg5-2 atg16(1-57) complex
93d1cc1l_



not modelled 12.2 10 Fold:HydB/Nqo4-like
Superfamily:HydB/Nqo4-like
Family:Nickel-iron hydrogenase, large subunit
94d1jr1a4



not modelled 12.0 29 Fold:CBS-domain pair
Superfamily:CBS-domain pair
Family:CBS-domain pair
95c3gxxB_



not modelled 11.9 13 PDB header:transcription
Chain: B: PDB Molecule:transcription elongation factor spt6;
PDBTitle: structure of the sh2 domain of the candida glabrata2 transcription elongation factor spt6, crystal form b
96d2fug41



not modelled 11.2 11 Fold:HydB/Nqo4-like
Superfamily:HydB/Nqo4-like
Family:Nqo4-like
97c2fug4_



not modelled 11.2 11 PDB header:oxidoreductase
Chain: 4: PDB Molecule:nadh-quinone oxidoreductase chain 4;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
98d1ybha1



not modelled 11.0 22 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
99c1b7gO_



not modelled 11.0 19 PDB header:oxidoreductase
Chain: O: PDB Molecule:protein (glyceraldehyde 3-phosphate dehydrogenase);
PDBTitle: glyceraldehyde 3-phosphate dehydrogenase

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0