Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	D	F	A	S	Y	H	R	A	A	T	L	A	D	A	I	N	L	L	A	D	N	P	Q	A	K	L	L	A	G	G	T	D	V	L	I	Q	L	H	H	H	N	D	R	Y	R	H	I	V	D	I	H	N	L	A	E	L	R	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	T	L	A	E	D	G	S	L	R	I	G	S	A	T	T	F	T	Q	L	I	E	D	P	I	T	Q	R	H	L	P	A	L	C	A	A	A	T	S	I	A	G	P	Q	I	R	N	V	A	T	Y	G	G	N	I	C	N	G	A	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	A	D	S	A	T	P	T	L	I	Y	D	A	K	L	E	I	H	S	P	R	G	V	R	F	V	P	I	N	G	F	H	T	G	P	G	K	V	S	L	E	H	D	E	I	L	V	A	F	H	F	P	P	Q	P	K	E	H	A	G
Secondary structure
SS confidence
Disorder																					?																		?				?														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	A	H	F	K	Y	A	M	R	D	A	M	D	I	S	T	I	G	C	A	A	H	C	R	L	D	N	G	N	F	S	E	L	R	L	A	F	G	V	A	A	P	T	P	I	R	C	Q	H	A	E	Q	T	A	Q	N	A	P	L	N
Secondary structure
SS confidence
Disorder											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Sequence		L	Q	T	L	E	A	I	S	E	S	V	L	Q	D	V	A	P	R	S	S	W	R	A	S	K	E	F	R	L	H	L	I	Q	T	M	T	K	K	V	I	S	E	A	V	A	A	A	G	G	K	L	Q
Secondary structure
SS confidence
Disorder																			?																													?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1n62 chain C Region: 1 - 287 Aligned: 284 Modelled: 286 Confidence: 100.0% Identity: 28% PDB header:oxidoreductase Chain: C: PDB Molecule:carbon monoxide dehydrogenase medium chain; PDBTitle: crystal structure of the mo,cu-co dehydrogenase (codh), n-2 butylisocyanide-bound state Phyre2 PDB 3hrd chain C Region: 1 - 288 Aligned: 285 Modelled: 288 Confidence: 100.0% Identity: 30% PDB header:oxidoreductase Chain: C: PDB Molecule:nicotinate dehydrogenase fad-subunit; PDBTitle: crystal structure of nicotinate dehydrogenase Phyre2 PDB 1t3q chain F Region: 1 - 287 Aligned: 282 Modelled: 284 Confidence: 100.0% Identity: 28% PDB header:oxidoreductase Chain: F: PDB Molecule:quinoline 2-oxidoreductase medium subunit; PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86 Phyre2 PDB 1ffu chain F Region: 1 - 288 Aligned: 285 Modelled: 288 Confidence: 100.0% Identity: 31% PDB header:hydrolase Chain: F: PDB Molecule:cutm, flavoprotein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor Phyre2 PDB 1rm6 chain E Region: 1 - 285 Aligned: 279 Modelled: 283 Confidence: 100.0% Identity: 32% PDB header:oxidoreductase Chain: E: PDB Molecule:4-hydroxybenzoyl-coa reductase beta subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica Phyre2 PDB 1wyg chain A Region: 6 - 288 Aligned: 281 Modelled: 283 Confidence: 100.0% Identity: 24% PDB header:oxidoreductase Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s) Phyre2 PDB 2w3r chain G Region: 5 - 292 Aligned: 282 Modelled: 284 Confidence: 100.0% Identity: 26% PDB header:oxidoreductase Chain: G: PDB Molecule:xanthine dehydrogenase; PDBTitle: crystal structure of xanthine dehydrogenase (desulfo form)2 from rhodobacter capsulatus in complex with hypoxanthine Phyre2 PDB 3b9j chain J Region: 5 - 288 Aligned: 282 Modelled: 284 Confidence: 100.0% Identity: 24% PDB header:oxidoreductase Chain: J: PDB Molecule:xanthine oxidase; PDBTitle: structure of xanthine oxidase with 2-hydroxy-6-methylpurine Phyre2 PDB 3etr chain M Region: 5 - 288 Aligned: 282 Modelled: 284 Confidence: 100.0% Identity: 24% PDB header:oxidoreductase Chain: M: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of xanthine oxidase in complex with2 lumazine Phyre2 PDB 1ffv chain C domain 2 Region: 1 - 176 Aligned: 175 Modelled: 176 Confidence: 100.0% Identity: 35% Fold: FAD-binding/transporter-associated domain-like Superfamily: FAD-binding/transporter-associated domain-like Family: CO dehydrogenase flavoprotein N-terminal domain-like Phyre2 PDB 1n62 chain C domain 2 Region: 1 - 176 Aligned: 175 Modelled: 176 Confidence: 100.0% Identity: 31% Fold: FAD-binding/transporter-associated domain-like Superfamily: FAD-binding/transporter-associated domain-like Family: CO dehydrogenase flavoprotein N-terminal domain-like Phyre2 PDB 1t3q chain C domain 2 Region: 1 - 175 Aligned: 173 Modelled: 175 Confidence: 100.0% Identity: 30% Fold: FAD-binding/transporter-associated domain-like Superfamily: FAD-binding/transporter-associated domain-like Family: CO dehydrogenase flavoprotein N-terminal domain-like Phyre2 PDB 1rm6 chain B domain 2 Region: 1 - 173 Aligned: 171 Modelled: 173 Confidence: 100.0% Identity: 40% Fold: FAD-binding/transporter-associated domain-like Superfamily: FAD-binding/transporter-associated domain-like Family: CO dehydrogenase flavoprotein N-terminal domain-like Phyre2 PDB 1v97 chain A domain 6 Region: 6 - 176 Aligned: 170 Modelled: 171 Confidence: 100.0% Identity: 25% Fold: FAD-binding/transporter-associated domain-like Superfamily: FAD-binding/transporter-associated domain-like Family: CO dehydrogenase flavoprotein N-terminal domain-like Phyre2 PDB 3b9j chain B domain 2 Region: 3 - 176 Aligned: 173 Modelled: 174 Confidence: 100.0% Identity: 24% Fold: FAD-binding/transporter-associated domain-like Superfamily: FAD-binding/transporter-associated domain-like Family: CO dehydrogenase flavoprotein N-terminal domain-like Phyre2 PDB 1jro chain A domain 4 Region: 7 - 175 Aligned: 166 Modelled: 169 Confidence: 100.0% Identity: 25% Fold: FAD-binding/transporter-associated domain-like Superfamily: FAD-binding/transporter-associated domain-like Family: CO dehydrogenase flavoprotein N-terminal domain-like Phyre2 PDB 1v97 chain A domain 4 Region: 178 - 288 Aligned: 111 Modelled: 111 Confidence: 99.9% Identity: 20% Fold: CO dehydrogenase flavoprotein C-domain-like Superfamily: CO dehydrogenase flavoprotein C-terminal domain-like Family: CO dehydrogenase flavoprotein C-terminal domain-like Phyre2 PDB 1jro chain A domain 3 Region: 180 - 289 Aligned: 110 Modelled: 110 Confidence: 99.9% Identity: 26% Fold: CO dehydrogenase flavoprotein C-domain-like Superfamily: CO dehydrogenase flavoprotein C-terminal domain-like Family: CO dehydrogenase flavoprotein C-terminal domain-like Phyre2 PDB 1n62 chain C domain 1 Region: 178 - 287 Aligned: 109 Modelled: 110 Confidence: 99.9% Identity: 22% Fold: CO dehydrogenase flavoprotein C-domain-like Superfamily: CO dehydrogenase flavoprotein C-terminal domain-like Family: CO dehydrogenase flavoprotein C-terminal domain-like Phyre2 PDB 1t3q chain C domain 1 Region: 180 - 287 Aligned: 107 Modelled: 108 Confidence: 99.9% Identity: 23% Fold: CO dehydrogenase flavoprotein C-domain-like Superfamily: CO dehydrogenase flavoprotein C-terminal domain-like Family: CO dehydrogenase flavoprotein C-terminal domain-like Phyre2 1 c1n62C_ 2 c3hrdC_ 3 c1t3qF_ 4 c1ffuF_ 5 c1rm6E_ 6 c1wygA_ 7 c2w3rG_ 8 c3b9jJ_ 9 c3etrM_ 10 d1ffvc2 11 d1n62c2 12 d1t3qc2 13 d1rm6b2 14 d1v97a6 15 d3b9jb2 16 d1jroa4 17 d1v97a4 18 d1jroa3 19 d1n62c1 20 d1t3qc1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1n62C_ 100.0 28 PDB header:oxidoreductase Chain: C: PDB Molecule:carbon monoxide dehydrogenase medium chain; PDBTitle: crystal structure of the mo,cu-co dehydrogenase (codh), n-2 butylisocyanide-bound state 2 c3hrdC_ 100.0 30 PDB header:oxidoreductase Chain: C: PDB Molecule:nicotinate dehydrogenase fad-subunit; PDBTitle: crystal structure of nicotinate dehydrogenase 3 c1t3qF_ 100.0 28 PDB header:oxidoreductase Chain: F: PDB Molecule:quinoline 2-oxidoreductase medium subunit; PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86 4 c1ffuF_ 100.0 31 PDB header:hydrolase Chain: F: PDB Molecule:cutm, flavoprotein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor 5 c1rm6E_ 100.0 32 PDB header:oxidoreductase Chain: E: PDB Molecule:4-hydroxybenzoyl-coa reductase beta subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica 6 c1wygA_ 100.0 24 PDB header:oxidoreductase Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s) 7 c2w3rG_ 100.0 26 PDB header:oxidoreductase Chain: G: PDB Molecule:xanthine dehydrogenase; PDBTitle: crystal structure of xanthine dehydrogenase (desulfo form)2 from rhodobacter capsulatus in complex with hypoxanthine 8 c3b9jJ_ 100.0 24 PDB header:oxidoreductase Chain: J: PDB Molecule:xanthine oxidase; PDBTitle: structure of xanthine oxidase with 2-hydroxy-6-methylpurine 9 c3etrM_ 100.0 24 PDB header:oxidoreductase Chain: M: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of xanthine oxidase in complex with2 lumazine 10 d1ffvc2 100.0 35 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CO dehydrogenase flavoprotein N-terminal domain-like 11 d1n62c2 100.0 31 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CO dehydrogenase flavoprotein N-terminal domain-like 12 d1t3qc2 100.0 30 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CO dehydrogenase flavoprotein N-terminal domain-like 13 d1rm6b2 100.0 40 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CO dehydrogenase flavoprotein N-terminal domain-like 14 d1v97a6 100.0 25 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CO dehydrogenase flavoprotein N-terminal domain-like 15 d3b9jb2 100.0 24 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CO dehydrogenase flavoprotein N-terminal domain-like 16 d1jroa4 100.0 25 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CO dehydrogenase flavoprotein N-terminal domain-like 17 d1v97a4 99.9 20 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 18 d1jroa3 99.9 26 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 19 d1n62c1 99.9 22 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 20 d1t3qc1 99.9 23 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 21 d1ffvc1 not modelled 99.9 24 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 22 d1rm6b1 not modelled 99.9 18 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 23 c1hskA_ not modelled 97.9 15 PDB header:oxidoreductase Chain: A: PDB Molecule:udp-n-acetylenolpyruvoylglucosamine reductase; PDBTitle: crystal structure of s. aureus murb 24 c1mbbA_ not modelled 97.9 18 PDB header:oxidoreductase Chain: A: PDB Molecule:uridine diphospho-n-acetylenolpyruvylglucosamine PDBTitle: oxidoreductase 25 c3i99A_ not modelled 97.8 15 PDB header:oxidoreductase Chain: A: PDB Molecule:udp-n-acetylenolpyruvoylglucosamine reductase; PDBTitle: the crystal structure of the udp-n-acetylenolpyruvoylglucosamine2 reductase from the vibrio cholerae o1 biovar tor 26 c1zr6A_ not modelled 97.8 11 PDB header:oxidoreductase Chain: A: PDB Molecule:glucooligosaccharide oxidase; PDBTitle: the crystal structure of an acremonium strictum glucooligosaccharide2 oxidase reveals a novel flavinylation 27 c2wdwB_ not modelled 97.7 14 PDB header:oxidoreductase Chain: B: PDB Molecule:putative hexose oxidase; PDBTitle: the native crystal structure of the primary hexose oxidase (2 dbv29) in antibiotic a40926 biosynthesis 28 c2ipiD_ not modelled 97.5 12 PDB header:oxidoreductase Chain: D: PDB Molecule:aclacinomycin oxidoreductase (aknox); PDBTitle: crystal structure of aclacinomycin oxidoreductase 29 c3fwaA_ not modelled 97.5 15 PDB header:flavoprotein Chain: A: PDB Molecule:reticuline oxidase; PDBTitle: structure of berberine bridge enzyme, c166a variant in complex with2 (s)-reticuline 30 d1uxya1 not modelled 97.5 15 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain 31 c2vfvA_ not modelled 97.4 15 PDB header:oxidoreductase Chain: A: PDB Molecule:xylitol oxidase; PDBTitle: alditol oxidase from streptomyces coelicolor a3(2): complex2 with sulphite 32 c2y3rC_ not modelled 97.3 14 PDB header:oxidoreductase Chain: C: PDB Molecule:taml; PDBTitle: structure of the tirandamycin-bound fad-dependent2 tirandamycin oxidase taml in p21 space group 33 d1hska1 not modelled 97.3 16 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain 34 c3d2hA_ not modelled 97.3 15 PDB header:oxidoreductase Chain: A: PDB Molecule:berberine bridge-forming enzyme; PDBTitle: structure of berberine bridge enzyme from eschscholzia californica,2 monoclinic crystal form 35 c2gquA_ not modelled 97.1 16 PDB header:oxidoreductase Chain: A: PDB Molecule:udp-n-acetylenolpyruvylglucosamine reductase; PDBTitle: crystal structure of udp-n-acetylenolpyruvylglucosamine2 reductase (murb) from thermus caldophilus 36 c3bw7A_ not modelled 96.9 15 PDB header:oxidoreductase Chain: A: PDB Molecule:cytokinin dehydrogenase 1; PDBTitle: maize cytokinin oxidase/dehydrogenase complexed with the allenic2 cytokinin analog ha-1 37 c3pm9A_ not modelled 96.9 15 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of a putative dehydrogenase (rpa1076) from2 rhodopseudomonas palustris cga009 at 2.57 a resolution 38 c1f0xA_ not modelled 96.8 20 PDB header:oxidoreductase Chain: A: PDB Molecule:d-lactate dehydrogenase; PDBTitle: crystal structure of d-lactate dehydrogenase, a peripheral2 membrane respiratory enzyme. 39 c2uuvC_ not modelled 96.8 14 PDB header:transferase Chain: C: PDB Molecule:alkyldihydroxyacetonephosphate synthase; PDBTitle: alkyldihydroxyacetonephosphate synthase in p1 40 d1f0xa2 not modelled 96.7 19 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:FAD-linked oxidases, N-terminal domain 41 c3popD_ not modelled 96.5 23 PDB header:oxidoreductase Chain: D: PDB Molecule:gilr oxidase; PDBTitle: the crystal structure of gilr, an oxidoreductase that catalyzes the2 terminal step of gilvocarcin biosynthesis 42 d2i0ka2 not modelled 96.4 15 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:FAD-linked oxidases, N-terminal domain 43 c2bvfA_ not modelled 96.2 16 PDB header:oxidase Chain: A: PDB Molecule:6-hydroxy-d-nicotine oxidase; PDBTitle: crystal structure of 6-hydoxy-d-nicotine oxidase from2 arthrobacter nicotinovorans. crystal form 3 (p1) 44 c2exrA_ not modelled 96.2 14 PDB header:oxidoreductase Chain: A: PDB Molecule:cytokinin dehydrogenase 7; PDBTitle: x-ray structure of cytokinin oxidase/dehydrogenase (ckx)2 from arabidopsis thaliana at5g21482 45 c1wveB_ not modelled 96.0 15 PDB header:oxidoreductase Chain: B: PDB Molecule:4-cresol dehydrogenase [hydroxylating] PDBTitle: p-cresol methylhydroxylase: alteration of the structure of2 the flavoprotein subunit upon its binding to the3 cytochrome subunit 46 c1i19B_ not modelled 95.8 16 PDB header:oxidoreductase Chain: B: PDB Molecule:cholesterol oxidase; PDBTitle: crystal structure of cholesterol oxidase from b.sterolicum 47 c3js8A_ not modelled 95.7 10 PDB header:oxidoreductase Chain: A: PDB Molecule:cholesterol oxidase; PDBTitle: solvent-stable cholesterol oxidase 48 d1wvfa2 not modelled 95.5 15 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:FAD-linked oxidases, N-terminal domain 49 c1ahuB_ not modelled 94.5 12 PDB header:flavoenzyme Chain: B: PDB Molecule:vanillyl-alcohol oxidase; PDBTitle: structure of the octameric flavoenzyme vanillyl-alcohol2 oxidase in complex with p-cresol 50 d1w1oa2 not modelled 93.9 13 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:FAD-linked oxidases, N-terminal domain 51 d1e8ga2 not modelled 92.8 10 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:FAD-linked oxidases, N-terminal domain 52 d1x2ga1 not modelled 89.9 16 Fold:SufE/NifU Superfamily:SufE/NifU Family:SP1160 C-terminal domain-like 53 d1vqza1 not modelled 89.6 2 Fold:SufE/NifU Superfamily:SufE/NifU Family:SP1160 C-terminal domain-like 54 c2e5aA_ not modelled 75.4 9 PDB header:ligase Chain: A: PDB Molecule:lipoyltransferase 1; PDBTitle: crystal structure of bovine lipoyltransferase in complex2 with lipoyl-amp 55 c1x2gB_ not modelled 75.0 18 PDB header:ligase Chain: B: PDB Molecule:lipoate-protein ligase a; PDBTitle: crystal structure of lipate-protein ligase a from2 escherichia coli 56 d1su0b_ not modelled 69.2 14 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 57 d1li4a2 not modelled 67.0 13 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:S-adenosylhomocystein hydrolase 58 d1xjsa_ not modelled 65.7 13 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 59 c1vqzA_ not modelled 63.1 2 PDB header:ligase Chain: A: PDB Molecule:lipoate-protein ligase, putative; PDBTitle: crystal structure of a putative lipoate-protein ligase a (sp_1160)2 from streptococcus pneumoniae tigr4 at 1.99 a resolution 60 c2yvsA_ not modelled 59.6 14 PDB header:oxidoreductase Chain: A: PDB Molecule:glycolate oxidase subunit glce; PDBTitle: crystal structure of glycolate oxidase subunit glce from thermus2 thermophilus hb8 61 d1v8ba2 not modelled 56.1 16 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:S-adenosylhomocystein hydrolase 62 c2qq4A_ not modelled 50.3 10 PDB header:metal binding protein Chain: A: PDB Molecule:iron-sulfur cluster biosynthesis protein iscu; PDBTitle: crystal structure of iron-sulfur cluster biosynthesis2 protein iscu (ttha1736) from thermus thermophilus hb8 63 c3d64A_ not modelled 44.5 14 PDB header:hydrolase Chain: A: PDB Molecule:adenosylhomocysteinase; PDBTitle: crystal structure of s-adenosyl-l-homocysteine hydrolase from2 burkholderia pseudomallei 64 c3dhyC_ not modelled 43.0 17 PDB header:hydrolase Chain: C: PDB Molecule:adenosylhomocysteinase; PDBTitle: crystal structures of mycobacterium tuberculosis s-adenosyl-l-2 homocysteine hydrolase in ternary complex with substrate and3 inhibitors 65 c1v8bA_ not modelled 42.7 16 PDB header:hydrolase Chain: A: PDB Molecule:adenosylhomocysteinase; PDBTitle: crystal structure of a hydrolase 66 c3oneA_ not modelled 41.1 16 PDB header:hydrolase/hydrolase substrate Chain: A: PDB Molecule:adenosylhomocysteinase; PDBTitle: crystal structure of lupinus luteus s-adenosyl-l-homocysteine2 hydrolase in complex with adenine 67 d1wfza_ not modelled 35.9 13 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 68 d1r9pa_ not modelled 35.5 13 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 69 c3n58D_ not modelled 32.7 19 PDB header:hydrolase Chain: D: PDB Molecule:adenosylhomocysteinase; PDBTitle: crystal structure of s-adenosyl-l-homocysteine hydrolase from brucella2 melitensis in ternary complex with nad and adenosine, orthorhombic3 form 70 d1frfl_ not modelled 31.7 13 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit 71 d1e3db_ not modelled 29.8 17 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit 72 d1wuil1 not modelled 28.0 13 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit 73 c2z7eB_ not modelled 25.8 9 PDB header:biosynthetic protein Chain: B: PDB Molecule:nifu-like protein; PDBTitle: crystal structure of aquifex aeolicus iscu with bound [2fe-2 2s] cluster 74 c2wpnB_ not modelled 23.4 7 PDB header:oxidoreductase Chain: B: PDB Molecule:periplasmic [nifese] hydrogenase, large subunit, PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough 75 d1yq9h1 not modelled 22.8 15 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit 76 c1h2aL_ not modelled 22.1 14 PDB header:oxidoreductase Chain: L: PDB Molecule:hydrogenase; PDBTitle: single crystals of hydrogenase from desulfovibrio vulgaris 77 d1j3ka_ not modelled 20.1 24 Fold:Dihydrofolate reductase-like Superfamily:Dihydrofolate reductase-like Family:Dihydrofolate reductases 78 c3ix9B_ not modelled 19.3 7 PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrofolate reductase; PDBTitle: crystal structure of streptococcus pneumoniae dihydrofolate2 reductase - sp9 mutant 79 c3dg8B_ not modelled 18.8 24 PDB header:oxidoreductase, transferase Chain: B: PDB Molecule:bifunctional dihydrofolate reductase-thymidylate PDBTitle: quadruple mutant (n51i+c59r+s108n+i164l) plasmodium2 falciparum dihydrofolate reductase-thymidylate synthase3 (pfdhfr-ts) complexed with rjf670, nadph, and dump 80 d2ji7a1 not modelled 18.7 17 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 81 d1fmta1 not modelled 18.0 13 Fold:FMT C-terminal domain-like Superfamily:FMT C-terminal domain-like Family:Post formyltransferase domain 82 c2blcA_ not modelled 17.7 21 PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrofolate reductase-thymidylate synthase; PDBTitle: sp21 double mutant p. vivax dihydrofolate reductase in2 complex with des-chloropyrimethamine 83 c1zdrB_ not modelled 17.7 14 PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrofolate reductase; PDBTitle: dhfr from bacillus stearothermophilus 84 d2qdya1 not modelled 17.5 20 Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain 85 c2qyaA_ not modelled 17.4 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein; PDBTitle: crystal structure of an uncharacterized conserved protein2 from methanopyrus kandleri 86 c1d4fD_ not modelled 14.8 14 PDB header:hydrolase Chain: D: PDB Molecule:s-adenosylhomocysteine hydrolase; PDBTitle: crystal structure of recombinant rat-liver d244e mutant s-2 adenosylhomocysteine hydrolase 87 c3qyhG_ not modelled 14.5 11 PDB header:lyase Chain: G: PDB Molecule:co-type nitrile hydratase alpha subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-h71l from2 pseudomonas putida. 88 d1ozha1 not modelled 14.2 17 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 89 d2djia1 not modelled 13.8 26 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 90 d1aoea_ not modelled 13.0 21 Fold:Dihydrofolate reductase-like Superfamily:Dihydrofolate reductase-like Family:Dihydrofolate reductases 91 d1oj7a_ not modelled 12.8 18 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 92 c2dyoB_ not modelled 12.3 56 PDB header:protein turnover/protein turnover Chain: B: PDB Molecule:autophagy protein 16; PDBTitle: the crystal structure of saccharomyces cerevisiae atg5-2 atg16(1-57) complex 93 d1cc1l_ not modelled 12.2 10 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit 94 d1jr1a4 not modelled 12.0 29 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 95 c3gxxB_ not modelled 11.9 13 PDB header:transcription Chain: B: PDB Molecule:transcription elongation factor spt6; PDBTitle: structure of the sh2 domain of the candida glabrata2 transcription elongation factor spt6, crystal form b 96 d2fug41 not modelled 11.2 11 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nqo4-like 97 c2fug4_ not modelled 11.2 11 PDB header:oxidoreductase Chain: 4: PDB Molecule:nadh-quinone oxidoreductase chain 4; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 98 d1ybha1 not modelled 11.0 22 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 99 c1b7gO_ not modelled 11.0 19 PDB header:oxidoreductase Chain: O: PDB Molecule:protein (glyceraldehyde 3-phosphate dehydrogenase); PDBTitle: glyceraldehyde 3-phosphate dehydrogenase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0