18/01/2012 08:38:41 : INFO  : Run start: Wed Jan 18 08:38:39 GMT 2012
18/01/2012 08:38:50 : INFO  : Initialised job
18/01/2012 08:38:53 : INFO  : Renaming log file 'phyre2_20120118_083838.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/a339770d4e879676/phyre_20120118_083838.log'
18/01/2012 08:38:55 : INFO  : Initialised job:
Sequence
>batch____
MFDFASYHRAATLADAINLLADNPQAKLLAGGTDVLIQLHHHNDRYRHIVDIHNLAELRG
ITLAEDGSLRIGSATTFTQLIEDPITQRHLPALCAAATSIAGPQIRNVATYGGNICNGAT
SADSATPTLIYDAKLEIHSPRGVRFVPINGFHTGPGKVSLEHDEILVAFHFPPQPKEHAG
SAHFKYAMRDAMDISTIGCAAHCRLDNGNFSELRLAFGVAAPTPIRCQHAEQTAQNAPLN
LQTLEAISESVLQDVAPRSSWRASKEFRLHLIQTMTKKVISEAVAAAGGKLQ

18/01/2012 08:38:57 : INFO  : Checked sequence
18/01/2012 08:39:02 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 08:39:04 : INFO  : PSI-BLAST 3 iterations
18/01/2012 08:41:00 : INFO  : PSI-BLAST 5 iterations
18/01/2012 08:42:13 : INFO  : Finished PSI-BLAST
18/01/2012 08:42:17 : INFO  : Running Buildali to generate a3m file
18/01/2012 08:51:28 : INFO  : Converting to HMM
18/01/2012 08:51:33 : INFO  : Calibrating HMM
18/01/2012 08:51:53 : INFO  : Searching HMM database
18/01/2012 08:57:06 : INFO  : Finished buildali
18/01/2012 08:57:09 : INFO  : Predicting secondary structure
18/01/2012 08:57:24 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 08:57:28 : INFO  : Predicting Disordered regions
18/01/2012 08:57:36 : INFO  : Predicted Disorder (Disopred)
18/01/2012 08:57:39 : INFO  : Running memsat_svm check
18/01/2012 09:01:58 : INFO  : Running memsat_svm full
18/01/2012 09:10:46 : INFO  : Predicted Transmembrane (memsat_svm) ID 'a339770d4e879676'
18/01/2012 09:10:49 : INFO  : Initialising fold library search
18/01/2012 09:10:55 : INFO  : Initialised search input
18/01/2012 09:10:59 : INFO  : Building Ensemble models
18/01/2012 09:11:05 : INFO  : Building hh.c1n62C_.model.1.pdb
18/01/2012 09:11:33 : INFO  : Building hh.c3hrdC_.model.2.pdb
18/01/2012 09:11:55 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a339770d4e879676/hh.c3hrdC_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a339770d4e879676/c3hrdC_.2.pdb
18/01/2012 09:12:02 : INFO  : Building hh.c1t3qF_.model.3.pdb
18/01/2012 09:12:25 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a339770d4e879676/hh.c1t3qF_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a339770d4e879676/c1t3qF_.3.pdb
18/01/2012 09:12:32 : INFO  : Building hh.c1ffuF_.model.4.pdb
18/01/2012 09:12:54 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a339770d4e879676/hh.c1ffuF_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a339770d4e879676/c1ffuF_.4.pdb
18/01/2012 09:13:01 : INFO  : Building hh.c1rm6E_.model.5.pdb
18/01/2012 09:13:23 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a339770d4e879676/hh.c1rm6E_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a339770d4e879676/c1rm6E_.5.pdb
18/01/2012 09:13:31 : INFO  : Building hh.c1wygA_.model.6.pdb
18/01/2012 09:13:55 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a339770d4e879676/hh.c1wygA_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a339770d4e879676/c1wygA_.6.pdb
18/01/2012 09:14:02 : INFO  : Building c1n62C_.1.pdb
18/01/2012 09:14:26 : INFO  : Building c3hrdC_.2.pdb
18/01/2012 09:14:54 : INFO  : Building c1t3qF_.3.pdb
18/01/2012 09:15:22 : INFO  : Building c1ffuF_.4.pdb
18/01/2012 09:15:48 : INFO  : Building c1rm6E_.5.pdb
18/01/2012 09:16:17 : INFO  : Building c1wygA_.6.pdb
18/01/2012 09:16:44 : INFO  : Building c2w3rG_.7.pdb
18/01/2012 09:17:15 : INFO  : Building c3b9jJ_.8.pdb
18/01/2012 09:17:42 : INFO  : Building c3etrM_.9.pdb
18/01/2012 09:18:11 : INFO  : Building d1ffvc2.10.pdb
18/01/2012 09:18:39 : INFO  : Building d1n62c2.11.pdb
18/01/2012 09:19:06 : INFO  : Building d1t3qc2.12.pdb
18/01/2012 09:19:34 : INFO  : Building d1rm6b2.13.pdb
18/01/2012 09:20:01 : INFO  : Building d1v97a6.14.pdb
18/01/2012 09:20:26 : INFO  : Building d3b9jb2.15.pdb
18/01/2012 09:20:52 : INFO  : Building d1jroa4.16.pdb
18/01/2012 09:21:18 : INFO  : Building d1v97a4.17.pdb
18/01/2012 09:21:45 : INFO  : Building d1jroa3.18.pdb
18/01/2012 09:22:11 : INFO  : Building d1n62c1.19.pdb
18/01/2012 09:22:38 : INFO  : Building d1t3qc1.20.pdb
18/01/2012 09:25:58 : INFO  : Finished HH model building
18/01/2012 09:26:01 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 09:27:31 : INFO  : html domain output complete ID 'a339770d4e879676'
18/01/2012 10:10:43 : INFO  : Run end  : Wed Jan 18 10:10:41 GMT 2012
