Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	N	D	T	P	F	D	A	L	W	Q	R	M	L	A	R	G	W	T	P	V	S	E	S	R	L	D	D	W	L	T	Q	A	P	D	G	V	V	L	L	S	S	D	P	K	R	T	P	E	V	S	D	N	P	V	M	I	G	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	L	R	E	F	P	D	Y	T	W	Q	V	A	I	A	D	L	E	Q	S	E	A	I	G	D	R	F	G	V	F	R	F	P	A	T	L	V	F	T	G	G	N	Y	R	G	V	L	N	G	I	H	P	W	A	E	L	I	N	L	M
Secondary structure
SS confidence
Disorder																												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.
Sequence		R	G	L	V	E	P	Q	Q	E	R	A	S
Secondary structure
SS confidence
Disorder					?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2hfd chain A domain 1 Region: 1 - 132 Aligned: 132 Modelled: 132 Confidence: 100.0% Identity: 100% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: HyaE-like Phyre2 PDB 2qsi chain B Region: 20 - 125 Aligned: 105 Modelled: 103 Confidence: 99.9% Identity: 28% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative hydrogenase expression/formation protein hupg; PDBTitle: crystal structure of putative hydrogenase expression/formation protein2 hupg from rhodopseudomonas palustris cga009 Phyre2 PDB 2es7 chain A domain 1 Region: 7 - 125 Aligned: 103 Modelled: 115 Confidence: 99.9% Identity: 74% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: HyaE-like Phyre2 PDB 3p2a chain A Region: 19 - 127 Aligned: 106 Modelled: 109 Confidence: 99.8% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin-like protein; PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis Phyre2 PDB 3qdn chain A Region: 16 - 129 Aligned: 113 Modelled: 114 Confidence: 99.8% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin protein; PDBTitle: putative thioredoxin protein from salmonella typhimurium Phyre2 PDB 3p2a chain B Region: 19 - 125 Aligned: 104 Modelled: 107 Confidence: 99.8% Identity: 17% PDB header:oxidoreductase Chain: B: PDB Molecule:putative thioredoxin-like protein; PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis Phyre2 PDB 2ppt chain A Region: 19 - 124 Aligned: 103 Modelled: 106 Confidence: 99.8% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin-2; PDBTitle: crystal structure of thioredoxin-2 Phyre2 PDB 3gnj chain D Region: 16 - 125 Aligned: 108 Modelled: 108 Confidence: 99.8% Identity: 17% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:thioredoxin domain protein; PDBTitle: the crystal structure of a thioredoxin-related protein from2 desulfitobacterium hafniense dcb Phyre2 PDB 3dxb chain E Region: 19 - 127 Aligned: 107 Modelled: 109 Confidence: 99.8% Identity: 13% PDB header:splicing, transcription Chain: E: PDB Molecule:thioredoxin n-terminally fused to puf60(uhm); PDBTitle: structure of the uhm domain of puf60 fused to thioredoxin Phyre2 PDB 1thx chain A Region: 16 - 125 Aligned: 108 Modelled: 110 Confidence: 99.8% Identity: 11% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Thioltransferase Phyre2 PDB 1qgv chain A Region: 19 - 129 Aligned: 110 Modelled: 111 Confidence: 99.8% Identity: 8% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: spliceosomal protein U5-15Kd Phyre2 PDB 1xbs chain A Region: 23 - 124 Aligned: 101 Modelled: 102 Confidence: 99.8% Identity: 17% PDB header:transcription, cell cycle Chain: A: PDB Molecule:dim1-like protein; PDBTitle: crystal structure of human dim2: a dim1-like protein Phyre2 PDB 2l6d chain A Region: 18 - 123 Aligned: 102 Modelled: 106 Confidence: 99.8% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: solution structure of desulfothioredoxin from desulfovibrio vulgaris2 hildenborough in its reduced form Phyre2 PDB 1dby chain A Region: 20 - 125 Aligned: 104 Modelled: 106 Confidence: 99.8% Identity: 14% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Thioltransferase Phyre2 PDB 2r2j chain A Region: 20 - 127 Aligned: 106 Modelled: 108 Confidence: 99.8% Identity: 16% PDB header:chaperone Chain: A: PDB Molecule:thioredoxin domain-containing protein 4; PDBTitle: crystal structure of human erp44 Phyre2 PDB 1a8y chain A Region: 16 - 127 Aligned: 111 Modelled: 112 Confidence: 99.8% Identity: 14% PDB header:calcium-binding protein Chain: A: PDB Molecule:calsequestrin; PDBTitle: crystal structure of calsequestrin from rabbit skeletal muscle2 sarcoplasmic reticulum at 2.4 a resolution Phyre2 PDB 3tco chain A Region: 19 - 124 Aligned: 103 Modelled: 106 Confidence: 99.8% Identity: 14% PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin (trxa-1); PDBTitle: crystallographic and spectroscopic characterization of sulfolobus2 solfataricus trxa1 provide insights into the determinants of3 thioredoxin fold stability Phyre2 PDB 3hz4 chain A Region: 18 - 125 Aligned: 106 Modelled: 105 Confidence: 99.8% Identity: 13% PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure of thioredoxin from methanosarcina mazei Phyre2 PDB 2b5e chain A Region: 1 - 126 Aligned: 118 Modelled: 126 Confidence: 99.8% Identity: 8% PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase; PDBTitle: crystal structure of yeast protein disulfide isomerase Phyre2 PDB 1fb6 chain A Region: 19 - 124 Aligned: 104 Modelled: 106 Confidence: 99.8% Identity: 15% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Thioltransferase Phyre2 1 d2hfda1 2 c2qsiB_ 3 d2es7a1 4 c3p2aA_ 5 c3qdnA_ 6 c3p2aB_ 7 c2pptA_ 8 c3gnjD_ 9 c3dxbE_ 10 d1thxa_ 11 d1qgva_ 12 c1xbsA_ 13 c2l6dA_ 14 d1dbya_ 15 c2r2jA_ 16 c1a8yA_ 17 c3tcoA_ 18 c3hz4A_ 19 c2b5eA_ 20 d1fb6a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2hfda1 100.0 100 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:HyaE-like 2 c2qsiB_ 99.9 28 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative hydrogenase expression/formation protein hupg; PDBTitle: crystal structure of putative hydrogenase expression/formation protein2 hupg from rhodopseudomonas palustris cga009 3 d2es7a1 99.9 74 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:HyaE-like 4 c3p2aA_ 99.8 17 PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin-like protein; PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis 5 c3qdnA_ 99.8 19 PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin protein; PDBTitle: putative thioredoxin protein from salmonella typhimurium 6 c3p2aB_ 99.8 17 PDB header:oxidoreductase Chain: B: PDB Molecule:putative thioredoxin-like protein; PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis 7 c2pptA_ 99.8 16 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin-2; PDBTitle: crystal structure of thioredoxin-2 8 c3gnjD_ 99.8 17 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:thioredoxin domain protein; PDBTitle: the crystal structure of a thioredoxin-related protein from2 desulfitobacterium hafniense dcb 9 c3dxbE_ 99.8 13 PDB header:splicing, transcription Chain: E: PDB Molecule:thioredoxin n-terminally fused to puf60(uhm); PDBTitle: structure of the uhm domain of puf60 fused to thioredoxin 10 d1thxa_ 99.8 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 11 d1qgva_ 99.8 8 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:spliceosomal protein U5-15Kd 12 c1xbsA_ 99.8 17 PDB header:transcription, cell cycle Chain: A: PDB Molecule:dim1-like protein; PDBTitle: crystal structure of human dim2: a dim1-like protein 13 c2l6dA_ 99.8 16 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: solution structure of desulfothioredoxin from desulfovibrio vulgaris2 hildenborough in its reduced form 14 d1dbya_ 99.8 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 15 c2r2jA_ 99.8 16 PDB header:chaperone Chain: A: PDB Molecule:thioredoxin domain-containing protein 4; PDBTitle: crystal structure of human erp44 16 c1a8yA_ 99.8 14 PDB header:calcium-binding protein Chain: A: PDB Molecule:calsequestrin; PDBTitle: crystal structure of calsequestrin from rabbit skeletal muscle2 sarcoplasmic reticulum at 2.4 a resolution 17 c3tcoA_ 99.8 14 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin (trxa-1); PDBTitle: crystallographic and spectroscopic characterization of sulfolobus2 solfataricus trxa1 provide insights into the determinants of3 thioredoxin fold stability 18 c3hz4A_ 99.8 13 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure of thioredoxin from methanosarcina mazei 19 c2b5eA_ 99.8 8 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase; PDBTitle: crystal structure of yeast protein disulfide isomerase 20 d1fb6a_ 99.8 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 21 d2trxa_ not modelled 99.8 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 22 d1gh2a_ not modelled 99.8 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 23 c1t00A_ not modelled 99.8 13 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: the structure of thioredoxin from s. coelicolor 24 c2e0qA_ not modelled 99.8 18 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure of k53e thioredoxin from sulfolobus2 tokodaii strain7 25 d1a8ya1 not modelled 99.8 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Calsequestrin 26 c3hypB_ not modelled 99.7 11 PDB header:electron transport Chain: B: PDB Molecule:thioredoxin; PDBTitle: crystal structure of bacteroides fragilis trxp_s105g mutant 27 c2diyA_ not modelled 99.7 15 PDB header:protein binding Chain: A: PDB Molecule:thioredoxin-like protein 2; PDBTitle: the solution structure of the thioredoxin domain of human2 thioredoxin-like protein 2 28 c2albA_ not modelled 99.7 11 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a3; PDBTitle: nmr structure of the n-terminal domain a of the2 glycoprotein chaperone erp57 29 c2i4aA_ not modelled 99.7 18 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure of thioredoxin from the acidophile2 acetobacter aceti 30 c2wz9A_ not modelled 99.7 15 PDB header:protein binding Chain: A: PDB Molecule:glutaredoxin-3; PDBTitle: crystal structure of the thioredoxin domain of human txnl2 31 d1f9ma_ not modelled 99.7 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 32 c2yzuA_ not modelled 99.7 20 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure of oxidized thioredoxin from thermus thermophilus2 hb8 33 c2i1uA_ not modelled 99.7 15 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: mycobacterium tuberculosis thioredoxin c 34 d1a8la2 not modelled 99.7 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 35 d1xwaa_ not modelled 99.7 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 36 c2vocA_ not modelled 99.7 19 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: thioredoxin a active site mutants form mixed disulfide2 dimers that resemble enzyme-substrate reaction3 intermediate 37 c3f8uA_ not modelled 99.7 11 PDB header:immune system/isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a3erp57; PDBTitle: tapasin/erp57 heterodimer 38 c1w89E_ not modelled 99.7 13 PDB header:electron transport Chain: E: PDB Molecule:thioredoxin; PDBTitle: structure of the reduced form of human thioredoxin 2 39 c2dj0A_ not modelled 99.7 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:thioredoxin-related transmembrane protein 2; PDBTitle: the solution structure of the thioredoxin domain of human2 thioredoxin-related transmembrane protein 2 40 d1nw2a_ not modelled 99.7 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 41 c2vimA_ not modelled 99.7 13 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: x-ray structure of fasciola hepatica thioredoxin 42 c2dj1A_ not modelled 99.7 13 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a4; PDBTitle: the solution structure of the first thioredoxin domain of2 mouse protein disulfide-isomerase a4 43 c1x5dA_ not modelled 99.7 12 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a6; PDBTitle: the solution structure of the second thioredoxin-like2 domain of human protein disulfide-isomerase a6 44 c2o7kA_ not modelled 99.7 14 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: s. aureus thioredoxin 45 c2xbqB_ not modelled 99.7 13 PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin; PDBTitle: crystal structure of reduced schistosoma mansoni2 thioredoxin pre-protein at 1.7 angstrom 46 d2ifqa1 not modelled 99.7 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 47 c2l5lA_ not modelled 99.7 12 PDB header:transport protein Chain: A: PDB Molecule:thioredoxin; PDBTitle: solution structure of thioredoxin from bacteroides vulgatus 48 c2vafA_ not modelled 99.7 11 PDB header:metal-binding protein Chain: A: PDB Molecule:calsequestrin-2; PDBTitle: crystal structure of human cardiac calsequestrin 49 c1v98A_ not modelled 99.7 17 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure analysis of thioredoxin from thermus thermophilus 50 d1r26a_ not modelled 99.7 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 51 d1j08a2 not modelled 99.7 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 52 c3emxB_ not modelled 99.7 16 PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin; PDBTitle: crystal structure of thioredoxin from aeropyrum pernix 53 d2b5ea4 not modelled 99.7 7 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 54 c3ed3A_ not modelled 99.7 11 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase mpd1; PDBTitle: crystal structure of the yeast dithiol/disulfide2 oxidoreductase mpd1p 55 d1m7ta_ not modelled 99.7 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 56 c2j23A_ not modelled 99.7 10 PDB header:immune protein Chain: A: PDB Molecule:thioredoxin; PDBTitle: cross-reactivity and crystal structure of malassezia2 sympodialis thioredoxin (mala s 13), a member of a new pan-3 allergen family 57 d1syra_ not modelled 99.7 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 58 c1sjiA_ not modelled 99.7 10 PDB header:metal binding protein Chain: A: PDB Molecule:calsequestrin, cardiac muscle isoform; PDBTitle: comparing skeletal and cardiac calsequestrin structures and2 their calcium binding: a proposed mechanism for coupled3 calcium binding and protein polymerization 59 c2dmlA_ not modelled 99.7 12 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a6; PDBTitle: the solution structure of the first thioredoxin domain of2 mouse protein disulfide-isomerase a6 60 c3apsA_ not modelled 99.7 10 PDB header:oxidoreductase Chain: A: PDB Molecule:dnaj homolog subfamily c member 10; PDBTitle: crystal structure of trx4 domain of erdj5 61 c2oe0B_ not modelled 99.7 16 PDB header:electron transport Chain: B: PDB Molecule:thioredoxin-3; PDBTitle: crystal structure of mitochondrial thioredoxin 3 from2 saccharomyces cerevisiae 62 c3d22A_ not modelled 99.7 15 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin h-type; PDBTitle: crystal structure of a poplar thioredoxin h mutant,2 pttrxh4c61s 63 d1ep7a_ not modelled 99.7 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 64 d1xfla_ not modelled 99.7 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 65 c2vlvA_ not modelled 99.7 16 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin h isoform 2.; PDBTitle: crystal structure of barley thioredoxin h isoform 2 in2 partially radiation-reduced state 66 c2dizA_ not modelled 99.7 15 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin domain-containing protein 5; PDBTitle: the solution structure of the third thioredoxin domain of2 human thioredoxin domain-containing protein 5 67 d1ti3a_ not modelled 99.7 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 68 c2vm2C_ not modelled 99.7 13 PDB header:oxidoreductase Chain: C: PDB Molecule:thioredoxin h isoform 1.; PDBTitle: crystal structure of barley thioredoxin h isoform 12 crystallized using peg as precipitant 69 d1a8la1 not modelled 99.7 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 70 d1oaza_ not modelled 99.6 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 71 d1g7ea_ not modelled 99.6 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:ERP29 N domain-like 72 d1j08a1 not modelled 99.6 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 73 c3apoA_ not modelled 99.6 12 PDB header:oxidoreductase Chain: A: PDB Molecule:dnaj homolog subfamily c member 10; PDBTitle: crystal structure of full-length erdj5 74 c1j08A_ not modelled 99.6 12 PDB header:isomerase Chain: A: PDB Molecule:glutaredoxin-like protein; PDBTitle: crystal structure of glutaredoxin-like protein from2 pyrococcus horikoshii 75 c3ul3A_ not modelled 99.6 15 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: structural insights into thioredoxin-2: a component of malaria2 parasite protein secretion machinery 76 d1meka_ not modelled 99.6 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 77 c1x5eA_ not modelled 99.6 13 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin domain containing protein 1; PDBTitle: the solution structure of the thioredoxin-like domain of2 human thioredoxin-related transmembrane protein 78 c2dj2A_ not modelled 99.6 15 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a4; PDBTitle: the solution structure of the second thioredoxin domain of2 mouse protein disulfide-isomerase a4 79 c2qc7A_ not modelled 99.6 11 PDB header:chaperone Chain: A: PDB Molecule:endoplasmic reticulum protein erp29; PDBTitle: crystal structure of the protein-disulfide isomerase related chaperone2 erp29 80 d1zmaa1 not modelled 99.6 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 81 c3idvA_ not modelled 99.6 14 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a4; PDBTitle: crystal structure of the a0a fragment of erp72 82 c3g9bA_ not modelled 99.6 8 PDB header:transferase Chain: A: PDB Molecule:dolichyl-diphosphooligosaccharide-protein PDBTitle: crystal structure of reduced ost6l 83 c2l57A_ not modelled 99.6 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of an uncharacterized thioredoin-like protein from2 clostridium perfringens 84 c2i9hA_ not modelled 99.6 17 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin i; PDBTitle: nmr solution structure of the reduced form of thioredoxin 12 from yeast (trx1) 85 c1ovnA_ not modelled 99.6 18 PDB header:chaperone Chain: A: PDB Molecule:windbeutel; PDBTitle: crystal structure and functional analysis of drosophila2 wind-- a pdi-related protein 86 c3apqB_ not modelled 99.6 14 PDB header:oxidoreductase Chain: B: PDB Molecule:dnaj homolog subfamily c member 10; PDBTitle: crystal structure of j-trx1 fragment of erdj5 87 c3d6iB_ not modelled 99.6 14 PDB header:oxidoreductase Chain: B: PDB Molecule:monothiol glutaredoxin-3; PDBTitle: structure of the thioredoxin-like domain of yeast2 glutaredoxin 3 88 c3cxgA_ not modelled 99.6 9 PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin; PDBTitle: crystal structure of plasmodium falciparum thioredoxin, pfi0790w 89 c2f51B_ not modelled 99.6 13 PDB header:electron transport Chain: B: PDB Molecule:thioredoxin; PDBTitle: structure of trichomonas vaginalis thioredoxin 90 c3h79A_ not modelled 99.5 14 PDB header:unknown function Chain: A: PDB Molecule:thioredoxin-like protein; PDBTitle: crystal structure of trypanosoma cruzi thioredoxin-like hypothetical2 protein q4dv70 91 c2aytB_ not modelled 99.5 14 PDB header:oxidoreductase Chain: B: PDB Molecule:glutaredoxin-like protein; PDBTitle: the crystal structure of a protein disulfide oxidoreductase from2 aquifex aeolicus 92 c1zypB_ not modelled 99.5 13 PDB header:oxidoreductase Chain: B: PDB Molecule:alkyl hydroperoxide reductase subunit f; PDBTitle: synchrotron reduced form of the n-terminal domain of2 salmonella typhimurium ahpf 93 d2b5ea1 not modelled 99.5 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 94 c2hlsB_ not modelled 99.5 13 PDB header:oxidoreductase Chain: B: PDB Molecule:protein disulfide oxidoreductase; PDBTitle: the crystal structure of a protein disulfide oxidoreductase from2 aeropyrum pernix k1 95 c2dj3A_ not modelled 99.5 13 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a4; PDBTitle: the solution structure of the third thioredoxin domain of2 mouse protein disulfide-isomerase a4 96 d1v9wa_ not modelled 99.5 7 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Txnl5-like 97 d1fo5a_ not modelled 99.5 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 98 d1woua_ not modelled 99.5 8 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Txnl5-like 99 d2c0ga2 not modelled 99.5 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:ERP29 N domain-like 100 c1x5cA_ not modelled 99.5 12 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase; PDBTitle: the solution structure of the second thioredoxin-like2 domain of human protein disulfide-isomerase 101 c2dbcA_ not modelled 99.5 22 PDB header:signaling protein Chain: A: PDB Molecule:unnamed protein product; PDBTitle: solution structure of the thioredoxin-like domain of2 phosducin-like protein 2(pdcl2) 102 c2fgxA_ not modelled 99.5 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thioredoxin; PDBTitle: solution nmr structure of protein ne2328 from nitrosomonas2 europaea. northeast structural genomics consortium target3 net3. 103 d2fwha1 not modelled 99.5 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 104 c3dmlA_ not modelled 99.4 10 PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the periplasmic thioredoxin soxs from2 paracoccus pantotrophus (reduced form) 105 d1nhoa_ not modelled 99.4 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 106 d1hyua4 not modelled 99.4 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 107 c2dmmA_ not modelled 99.4 12 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a3; PDBTitle: the solution structure of the second thioredoxin domain of2 human protein disulfide-isomerase a3 108 c1b9xC_ not modelled 99.4 15 PDB header:signaling protein Chain: C: PDB Molecule:protein (phosducin); PDBTitle: structural analysis of phosducin and its phosphorylation-2 regulated interaction with transducin 109 c3uemA_ not modelled 99.4 14 PDB header:chaperone Chain: A: PDB Molecule:protein disulfide-isomerase; PDBTitle: crystal structure of human pdi bb'a' domains 110 c2kucA_ not modelled 99.4 14 PDB header:isomerase Chain: A: PDB Molecule:putative disulphide-isomerase; PDBTitle: solution structure of a putative disulphide-isomerase from bacteroides2 thetaiotaomicron 111 c3kp8A_ not modelled 99.4 16 PDB header:oxidoreductase Chain: A: PDB Molecule:vkorc1/thioredoxin domain protein; PDBTitle: the thioredoxin-like domain of a vkor homolog from2 synechococcus sp. 112 d1a0rp_ not modelled 99.3 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Phosducin 113 d2djja1 not modelled 99.3 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 114 d2trcp_ not modelled 99.3 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Phosducin 115 c2hyxA_ not modelled 99.2 18 PDB header:unknown function Chain: A: PDB Molecule:protein dipz; PDBTitle: structure of the c-terminal domain of dipz from mycobacterium2 tuberculosis 116 c2ju5A_ not modelled 99.1 16 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin disulfide isomerase; PDBTitle: dsbh oxidoreductase 117 c3f9uA_ not modelled 99.1 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported cytochrome c biogenesis-related protein; PDBTitle: crystal structure of c-terminal domain of putative exported cytochrome2 c biogenesis-related protein from bacteroides fragilis 118 d1z5ye1 not modelled 99.1 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 119 d1wjka_ not modelled 98.9 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 120 d1knga_ not modelled 98.9 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0