Email l.a.kelley@imperial.ac.uk Description P16917 Date Wed Jan 25 15:20:40 GMT 2012 Unique Job ID 9ae603be021ddcff

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2oy7A_ 96.5 15 PDB header:membrane protein Chain: A: PDB Molecule:outer surface protein a; PDBTitle: the crystal structure of ospa mutant 2 d1hnga1 92.7 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 3 d1hnfa1 68.3 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 4 c1n7dA_ 67.7 12 PDB header:lipid transport Chain: A: PDB Molecule:low-density lipoprotein receptor; PDBTitle: extracellular domain of the ldl receptor 5 d1x3za1 39.1 18 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 6 d1ospo_ 33.3 16 Fold:open-sided beta-meander Superfamily:Outer surface protein Family:Outer surface protein 7 c2w8bB_ 31.4 12 PDB header:protein transport/membrane protein Chain: B: PDB Molecule:protein tolb; PDBTitle: crystal structure of processed tolb in complex with pal 8 c3e5zA_ 31.0 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative gluconolactonase; PDBTitle: x-ray structure of the putative gluconolactonase in protein family2 pf08450. northeast structural genomics consortium target drr130. 9 c3rwxA_ 25.0 18 PDB header:transport protein Chain: A: PDB Molecule:hypothetical bacterial outer membrane protein; PDBTitle: crystal structure of a hypothetical bacterial outer membrane protein2 (bf2706) from bacteroides fragilis nctc 9343 at 2.40 a resolution 10 d2j44a2 23.8 18 Fold:Prealbumin-like Superfamily:Starch-binding domain-like Family:PUD-like 11 c2ivzD_ 22.0 11 PDB header:protein transport/hydrolase Chain: D: PDB Molecule:protein tolb; PDBTitle: structure of tolb in complex with a peptide of the colicin2 e9 t-domain 12 d2f4ma1 21.0 26 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 13 c3eswA_ 20.8 21 PDB header:hydrolase Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine PDBTitle: complex of yeast pngase with glcnac2-iac. 14 d1sska_ 20.3 21 Fold:Coronavirus RNA-binding domain Superfamily:Coronavirus RNA-binding domain Family:Coronavirus RNA-binding domain 15 c3mswA_ 20.3 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein with unknown function (bf3112) from2 bacteroides fragilis nctc 9343 at 1.90 a resolution 16 c1j5qB_ 20.0 28 PDB header:viral protein Chain: B: PDB Molecule:major capsid protein; PDBTitle: the structure and evolution of the major capsid protein of a large,2 lipid-containing, dna virus. 17 d2j43a1 17.2 16 Fold:Prealbumin-like Superfamily:Starch-binding domain-like Family:PUD-like 18 d2j44a1 17.2 15 Fold:Prealbumin-like Superfamily:Starch-binding domain-like Family:PUD-like 19 d1ei5a1 15.5 32 Fold:Streptavidin-like Superfamily:D-aminopeptidase, middle and C-terminal domains Family:D-aminopeptidase, middle and C-terminal domains 20 c3k8hA_ 15.5 24 PDB header:membrane protein Chain: A: PDB Molecule:30klp; PDBTitle: structure of crystal form i of tp0453 21 c1t3dB_ not modelled 14.0 32 PDB header:transferase Chain: B: PDB Molecule:serine acetyltransferase; PDBTitle: crystal structure of serine acetyltransferase from e.coli at 2.2a 22 c3hd4A_ not modelled 13.8 21 PDB header:viral protein Chain: A: PDB Molecule:nucleoprotein; PDBTitle: mhv nucleocapsid protein ntd 23 c3ilwA_ not modelled 13.7 24 PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: structure of dna gyrase subunit a n-terminal domain 24 d1o5ua_ not modelled 13.6 8 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Hypothetical protein TM1112 25 c2ksnA_ not modelled 13.1 20 PDB header:signaling protein Chain: A: PDB Molecule:ubiquitin domain-containing protein 2; PDBTitle: solution structure of the n-terminal domain of dc-ubp/ubtd2 26 c2x12A_ not modelled 12.6 27 PDB header:cell adhesion Chain: A: PDB Molecule:fimbriae-associated protein fap1; PDBTitle: ph-induced modulation of streptococcus parasanguinis2 adhesion by fap1 fimbriae 27 c3s88I_ not modelled 12.6 19 PDB header:immune system/viral protein Chain: I: PDB Molecule:envelope glycoprotein; PDBTitle: crystal structure of sudan ebolavirus glycoprotein (strain gulu) bound2 to 16f6 28 c2kijA_ not modelled 12.1 25 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the actuator domain of the copper-2 transporting atpase atp7a 29 c3bmxB_ not modelled 12.1 42 PDB header:hydrolase Chain: B: PDB Molecule:uncharacterized lipoprotein ybbd; PDBTitle: beta-n-hexosaminidase (ybbd) from bacillus subtilis 30 d1xata_ not modelled 11.8 26 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 31 d1t3da_ not modelled 11.6 32 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Serine acetyltransferase 32 d1pk6c_ not modelled 11.4 27 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 33 c2wlgA_ not modelled 11.2 26 PDB header:transferase Chain: A: PDB Molecule:polysialic acid o-acetyltransferase; PDBTitle: crystallographic analysis of the polysialic acid o-2 acetyltransferase oatwy 34 d1td6a_ not modelled 11.1 31 Fold:Hypothetical protein MPN330 Superfamily:Hypothetical protein MPN330 Family:Hypothetical protein MPN330 35 c2j44A_ not modelled 11.1 15 PDB header:carbohydrate-binding module Chain: A: PDB Molecule:alkaline amylopullulanase; PDBTitle: alpha-glucan binding by a streptococcal virulence factor 36 c2gopB_ not modelled 11.0 8 PDB header:hydrolase Chain: B: PDB Molecule:trilobed protease; PDBTitle: the beta-propeller domain of the trilobed protease from pyrococcus2 furiosus reveals an open velcro topology 37 d1bcoa1 not modelled 11.0 17 Fold:mu transposase, C-terminal domain Superfamily:mu transposase, C-terminal domain Family:mu transposase, C-terminal domain 38 c3ifzA_ not modelled 10.8 21 PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: crystal structure of the first part of the mycobacterium tuberculosis2 dna gyrase reaction core: the breakage and reunion domain at 2.7 a3 resolution 39 d2bxxa1 not modelled 10.8 24 Fold:Coronavirus RNA-binding domain Superfamily:Coronavirus RNA-binding domain Family:Coronavirus RNA-binding domain 40 c2ka3C_ not modelled 10.7 36 PDB header:structural protein Chain: C: PDB Molecule:emilin-1; PDBTitle: structure of emilin-1 c1q-like domain 41 d1brwa3 not modelled 10.5 26 Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain 42 d2i52a1 not modelled 10.2 17 Fold:MK0786-like Superfamily:MK0786-like Family:MK0786-like 43 d1bcga_ not modelled 10.2 38 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Long-chain scorpion toxins 44 d1pk6b_ not modelled 10.1 27 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 45 d1pk6a_ not modelled 10.1 27 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 46 c3jroA_ not modelled 10.0 12 PDB header:transport protein, structural protein Chain: A: PDB Molecule:fusion protein of protein transport protein sec13 PDBTitle: nup84-nup145c-sec13 edge element of the npc lattice 47 d1mr7a_ not modelled 9.7 24 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 48 d2tpta3 not modelled 9.7 23 Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain 49 d2jdqd1 not modelled 9.5 20 Fold:PB2 C-terminal domain-like Superfamily:PB2 C-terminal domain-like Family:PB2 C-terminal domain-like 50 d1f00i2 not modelled 9.5 38 Fold:Immunoglobulin-like beta-sandwich Superfamily:Invasin/intimin cell-adhesion fragments Family:Invasin/intimin cell-adhesion fragments 51 d1m3ya2 not modelled 9.4 39 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Group II dsDNA viruses VP Family:Major capsid protein vp54 52 c3bgyA_ not modelled 9.4 20 PDB header:hydrolase, viral protein Chain: A: PDB Molecule:polynucleotide 5'-triphosphatase; PDBTitle: triclinic structure of mimivirus capping enzyme2 triphosphatase at 1.65 a 53 c3fsbB_ not modelled 9.1 27 PDB header:transferase Chain: B: PDB Molecule:qdtc; PDBTitle: crystal structure of qdtc, the dtdp-3-amino-3,6-dideoxy-d-2 glucose n-acetyl transferase from thermoanaerobacterium3 thermosaccharolyticum in complex with coa and dtdp-3-amino-4 quinovose 54 d1c3ha_ not modelled 9.0 31 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 55 c3vh0C_ not modelled 9.0 9 PDB header:protein binding/dna Chain: C: PDB Molecule:uncharacterized protein ynce; PDBTitle: crystal structure of e. coli ynce complexed with dna 56 c2hc8A_ not modelled 9.0 28 PDB header:transport protein Chain: A: PDB Molecule:cation-transporting atpase, p-type; PDBTitle: structure of the a. fulgidus copa a-domain 57 d1krra_ not modelled 8.9 29 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 58 c1gr3A_ not modelled 8.9 45 PDB header:collagen Chain: A: PDB Molecule:collagen x; PDBTitle: structure of the human collagen x nc1 trimer 59 d1gr3a_ not modelled 8.9 45 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 60 d1j2za_ not modelled 8.7 19 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:UDP N-acetylglucosamine acyltransferase 61 c2xzmG_ not modelled 8.7 17 PDB header:ribosome Chain: G: PDB Molecule:ribosomal protein s7 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 62 c2iu9C_ not modelled 8.6 23 PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine PDBTitle: chlamydia trachomatis lpxd with 100mm udpglcnac (complex ii) 63 d1jnpa_ not modelled 8.6 26 Fold:Oncogene products Superfamily:Oncogene products Family:Oncogene products 64 c1m4xC_ not modelled 8.5 39 PDB header:virus Chain: C: PDB Molecule:pbcv-1 virus capsid; PDBTitle: pbcv-1 virus capsid, quasi-atomic model 65 c2vtwF_ not modelled 8.4 32 PDB header:viral protein Chain: F: PDB Molecule:fiber protein 2; PDBTitle: structure of the c-terminal head domain of the fowl2 adenovirus type 1 short fibre 66 d2geca1 not modelled 8.3 24 Fold:Coronavirus RNA-binding domain Superfamily:Coronavirus RNA-binding domain Family:Coronavirus RNA-binding domain 67 c3di4A_ not modelled 8.3 25 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein duf1989; PDBTitle: crystal structure of a duf1989 family protein (spo0365) from2 silicibacter pomeroyi dss-3 at 1.60 a resolution 68 d1azpa_ not modelled 7.9 17 Fold:SH3-like barrel Superfamily:Chromo domain-like Family:"Histone-like" proteins from archaea 69 d1a1xa_ not modelled 7.9 21 Fold:Oncogene products Superfamily:Oncogene products Family:Oncogene products 70 c3qx3B_ not modelled 7.9 34 PDB header:isomerase/dna/isomerase inhibitor Chain: B: PDB Molecule:dna topoisomerase 2-beta; PDBTitle: human topoisomerase iibeta in complex with dna and etoposide 71 d1ufya_ not modelled 7.8 13 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:Chorismate mutase 72 d1f1sa3 not modelled 7.8 18 Fold:Hyaluronate lyase-like, C-terminal domain Superfamily:Hyaluronate lyase-like, C-terminal domain Family:Hyaluronate lyase-like, C-terminal domain 73 c3eevC_ not modelled 7.8 26 PDB header:transferase Chain: C: PDB Molecule:chloramphenicol acetyltransferase; PDBTitle: crystal structure of chloramphenicol acetyltransferase vca0300 from2 vibrio cholerae o1 biovar eltor 74 d2oqea2 not modelled 7.6 25 Fold:Cystatin-like Superfamily:Amine oxidase N-terminal region Family:Amine oxidase N-terminal region 75 d2pyta1 not modelled 7.5 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:EutQ-like 76 c3myxA_ not modelled 7.5 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pspto_0244; PDBTitle: crystal structure of a pspto_0244 (protein with unknown function which2 belongs to pfam duf861 family) from pseudomonas syringae pv. tomato3 str. dc3000 at 1.30 a resolution 77 c3r0sA_ not modelled 7.4 18 PDB header:transferase Chain: A: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o- PDBTitle: udp-n-acetylglucosamine acyltransferase from campylobacter jejuni 78 c2kssA_ not modelled 7.3 31 PDB header:transcription regulator Chain: A: PDB Molecule:carotenogenesis protein cars; PDBTitle: nmr structure of myxococcus xanthus antirepressor cars1 79 c2gacA_ not modelled 7.1 13 PDB header:hydrolase Chain: A: PDB Molecule:glycosylasparaginase; PDBTitle: t152c mutant glycosylasparaginase from flavobacterium2 meningosepticum 80 d1jsga_ not modelled 7.1 26 Fold:Oncogene products Superfamily:Oncogene products Family:Oncogene products 81 d1k8wa3 not modelled 7.0 27 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 82 d1w9pa2 not modelled 7.0 18 Fold:FKBP-like Superfamily:Chitinase insertion domain Family:Chitinase insertion domain 83 c2j43A_ not modelled 7.0 16 PDB header:carbohydrate-binding module Chain: A: PDB Molecule:spydx; PDBTitle: alpha-glucan recognition by family 41 carbohydrate-binding2 modules from streptococcal virulence factors 84 d1jofa_ not modelled 7.0 13 Fold:7-bladed beta-propeller Superfamily:3-carboxy-cis,cis-mucoante lactonizing enzyme Family:3-carboxy-cis,cis-mucoante lactonizing enzyme 85 c2l92A_ not modelled 6.9 44 PDB header:dna binding protein Chain: A: PDB Molecule:histone family protein nucleoid-structuring protein h-ns; PDBTitle: solution structure of the c-terminal domain of h-ns like protein bv3f 86 d1oi0a_ not modelled 6.9 15 Fold:Cytidine deaminase-like Superfamily:JAB1/MPN domain Family:JAB1/MPN domain 87 c7apiB_ not modelled 6.9 6 PDB header:proteinase inhibitor Chain: B: PDB Molecule:alpha 1-antitrypsin; PDBTitle: the s variant of human alpha1-antitrypsin, structure and implications2 for function and metabolism 88 c3i3aC_ not modelled 6.8 19 PDB header:transferase Chain: C: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n- PDBTitle: structural basis for the sugar nucleotide and acyl chain2 selectivity of leptospira interrogans lpxa 89 d2ax3a2 not modelled 6.8 14 Fold:YjeF N-terminal domain-like Superfamily:YjeF N-terminal domain-like Family:YjeF N-terminal domain-like 90 c1jjoE_ not modelled 6.8 22 PDB header:signaling protein Chain: E: PDB Molecule:neuroserpin; PDBTitle: crystal structure of mouse neuroserpin (cleaved form) 91 d1jiwi_ not modelled 6.8 15 Fold:Streptavidin-like Superfamily:beta-Barrel protease inhibitors Family:Metalloprotease inhibitor 92 c1n0nB_ not modelled 6.7 57 PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase [mn]; PDBTitle: catalytic and structural effects of amino-acid substitution at his302 in human manganese superoxide dismutase 93 c3jqyB_ not modelled 6.7 30 PDB header:transferase Chain: B: PDB Molecule:polysialic acid o-acetyltransferase; PDBTitle: crystal strucutre of the polysia specific acetyltransferase neuo 94 c3izbF_ not modelled 6.7 14 PDB header:ribosome Chain: F: PDB Molecule:40s ribosomal protein rps5 (s7p); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 95 c1y10C_ not modelled 6.7 32 PDB header:lyase Chain: C: PDB Molecule:hypothetical protein rv1264/mt1302; PDBTitle: mycobacterial adenylyl cyclase rv1264, holoenzyme, inhibited state 96 c1p7gL_ not modelled 6.6 43 PDB header:oxidoreductase Chain: L: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of superoxide dismutase from pyrobaculum2 aerophilum 97 d1ulva3 not modelled 6.6 35 Fold:Immunoglobulin-like beta-sandwich Superfamily:CBD9-like Family:Glucodextranase, domain C 98 c1gn4B_ not modelled 6.6 43 PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase; PDBTitle: h145e mutant of mycobacterium tuberculosis iron-superoxide2 dismutase. 99 c3dr2A_ not modelled 6.6 15 PDB header:hydrolase Chain: A: PDB Molecule:exported gluconolactonase; PDBTitle: structural and functional analyses of xc5397 from2 xanthomonas campestris: a gluconolactonase important in3 glucose secondary metabolic pathways