Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	K	I	G	V	I	A	D	D	F	T	G	A	T	D	I	A	S	F	L	V	E	N	G	L	P	T	V	Q	I	N	G	V	P	T	G	K	M	P	E	A	I	D	A	L	V	I	S	L	K	T	R	S	C	P	V	V	E	A
Secondary structure
SS confidence
Disorder		?	?																																			?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	Q	Q	S	L	A	A	L	S	W	L	Q	Q	Q	G	C	K	Q	I	Y	F	K	Y	C	S	T	F	D	S	T	A	K	G	N	I	G	P	V	T	D	A	L	M	D	A	L	D	T	P	F	T	V	F	S	P	A	L	P	V	N
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	R	T	V	Y	Q	G	Y	L	F	V	M	N	Q	L	L	A	E	S	G	M	R	H	H	P	V	N	P	M	T	D	S	Y	L	P	R	L	V	E	A	Q	S	T	G	R	C	G	V	V	S	A	H	V	F	E	Q	G	V	D	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	R	Q	E	L	A	R	L	Q	Q	E	G	Y	R	Y	A	V	L	D	A	L	T	E	H	H	L	E	I	Q	G	E	A	L	R	D	A	P	L	V	T	G	G	S	G	L	A	I	G	L	A	R	Q	W	A	Q	E	N	G	N	Q
Secondary structure
SS confidence
Disorder									?																																													?		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	R	K	A	G	R	P	L	A	G	R	G	V	V	L	S	G	S	C	S	Q	M	T	N	R	Q	V	A	H	Y	R	Q	I	A	P	A	R	E	V	D	V	A	R	C	L	S	I	E	T	L	A	A	Y	A	H	E	L	A	E	W
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?																																				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		V	L	G	Q	E	S	V	L	A	P	L	V	F	A	T	A	S	T	D	A	L	A	A	I	Q	Q	Q	Y	G	A	Q	K	A	S	Q	A	V	E	T	L	F	S	Q	L	A	A	R	L	A	A	E	G	V	T	R	F	I	V	A	G
Secondary structure
SS confidence
Disorder				?	?	?	?	?	?									?	?			?	?	?	?	?	?	?	?	?																								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Sequence		G	E	T	S	G	V	V	T	Q	S	L	G	I	K	G	F	H	I	G	P	T	I	S	P	A	C	R	G
Secondary structure
SS confidence
Disorder																									?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3dqq chain B Region: 1 - 387 Aligned: 380 Modelled: 387 Confidence: 100.0% Identity: 80% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative trna synthase; PDBTitle: the crystal structure of the putative trna synthase from salmonella2 typhimurium lt2 Phyre2 PDB 1yzy chain A domain 1 Region: 4 - 387 Aligned: 380 Modelled: 384 Confidence: 100.0% Identity: 54% Fold: YgbK-like Superfamily: YgbK-like Family: YgbK-like Phyre2 PDB 1uan chain A Region: 1 - 115 Aligned: 96 Modelled: 102 Confidence: 92.7% Identity: 19% Fold: LmbE-like Superfamily: LmbE-like Family: LmbE-like Phyre2 PDB 3eqz chain B Region: 1 - 66 Aligned: 66 Modelled: 66 Confidence: 84.7% Identity: 8% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of a response regulator from colwellia2 psychrerythraea Phyre2 PDB 3c3m chain A Region: 1 - 66 Aligned: 66 Modelled: 66 Confidence: 83.5% Identity: 11% PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1 Phyre2 PDB 2jrl chain A Region: 1 - 67 Aligned: 67 Modelled: 67 Confidence: 83.3% Identity: 15% PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: solution structure of the beryllofluoride-activated ntrc4 receiver2 domain dimer Phyre2 PDB 3a0r chain B Region: 1 - 66 Aligned: 66 Modelled: 65 Confidence: 81.9% Identity: 15% PDB header:transferase Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360) Phyre2 PDB 3i42 chain A Region: 1 - 66 Aligned: 66 Modelled: 66 Confidence: 81.8% Identity: 15% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey- PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus Phyre2 PDB 1qo0 chain D Region: 2 - 65 Aligned: 63 Modelled: 64 Confidence: 80.2% Identity: 13% Fold: Flavodoxin-like Superfamily: CheY-like Family: Positive regulator of the amidase operon AmiR Phyre2 PDB 2b4a chain A domain 1 Region: 2 - 66 Aligned: 65 Modelled: 65 Confidence: 79.7% Identity: 14% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 1zgz chain A domain 1 Region: 2 - 66 Aligned: 65 Modelled: 65 Confidence: 78.1% Identity: 9% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 3dfm chain A Region: 9 - 115 Aligned: 103 Modelled: 107 Confidence: 77.7% Identity: 12% PDB header:hydrolase Chain: A: PDB Molecule:teicoplanin pseudoaglycone deacetylase orf2; PDBTitle: the crystal structure of the zinc inhibited form of2 teicoplanin deacetylase orf2 Phyre2 PDB 3ghy chain A Region: 1 - 52 Aligned: 51 Modelled: 52 Confidence: 76.7% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:ketopantoate reductase protein; PDBTitle: crystal structure of a putative ketopantoate reductase from ralstonia2 solanacearum molk2 Phyre2 PDB 2nv0 chain A domain 1 Region: 1 - 79 Aligned: 74 Modelled: 79 Confidence: 75.9% Identity: 18% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Class I glutamine amidotransferases (GAT) Phyre2 PDB 1xhf chain A domain 1 Region: 2 - 66 Aligned: 65 Modelled: 65 Confidence: 71.0% Identity: 8% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 3r0j chain A Region: 1 - 49 Aligned: 49 Modelled: 49 Confidence: 69.4% Identity: 12% PDB header:dna binding protein Chain: A: PDB Molecule:possible two component system response transcriptional PDBTitle: structure of phop from mycobacterium tuberculosis Phyre2 PDB 2j48 chain A Region: 3 - 66 Aligned: 64 Modelled: 64 Confidence: 68.4% Identity: 11% PDB header:transferase Chain: A: PDB Molecule:two-component sensor kinase; PDBTitle: nmr structure of the pseudo-receiver domain of the cika2 protein. Phyre2 PDB 2qr3 chain A Region: 1 - 66 Aligned: 66 Modelled: 66 Confidence: 67.0% Identity: 9% PDB header:transcription Chain: A: PDB Molecule:two-component system response regulator; PDBTitle: crystal structure of the n-terminal signal receiver domain of two-2 component system response regulator from bacteroides fragilis Phyre2 PDB 3pln chain A Region: 1 - 122 Aligned: 111 Modelled: 122 Confidence: 66.9% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:udp-glucose 6-dehydrogenase; PDBTitle: crystal structure of klebsiella pneumoniae udp-glucose 6-dehydrogenase2 complexed with udp-glucose Phyre2 PDB 1kgs chain A domain 2 Region: 2 - 66 Aligned: 65 Modelled: 65 Confidence: 66.3% Identity: 14% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 1 c3dqqB_ 2 d1yzya1 3 d1uana_ 4 c3eqzB_ 5 c3c3mA_ 6 c2jrlA_ 7 c3a0rB_ 8 c3i42A_ 9 d1qo0d_ 10 d2b4aa1 11 d1zgza1 12 c3dfmA_ 13 c3ghyA_ 14 d2nv0a1 15 d1xhfa1 16 c3r0jA_ 17 c2j48A_ 18 c2qr3A_ 19 c3plnA_ 20 d1kgsa2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3dqqB_ 100.0 80 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative trna synthase; PDBTitle: the crystal structure of the putative trna synthase from salmonella2 typhimurium lt2 2 d1yzya1 100.0 54 Fold:YgbK-like Superfamily:YgbK-like Family:YgbK-like 3 d1uana_ 92.7 19 Fold:LmbE-like Superfamily:LmbE-like Family:LmbE-like 4 c3eqzB_ 84.7 8 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of a response regulator from colwellia2 psychrerythraea 5 c3c3mA_ 83.5 11 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1 6 c2jrlA_ 83.3 15 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: solution structure of the beryllofluoride-activated ntrc4 receiver2 domain dimer 7 c3a0rB_ 81.9 15 PDB header:transferase Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360) 8 c3i42A_ 81.8 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey- PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus 9 d1qo0d_ 80.2 13 Fold:Flavodoxin-like Superfamily:CheY-like Family:Positive regulator of the amidase operon AmiR 10 d2b4aa1 79.7 14 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 11 d1zgza1 78.1 9 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 12 c3dfmA_ 77.7 12 PDB header:hydrolase Chain: A: PDB Molecule:teicoplanin pseudoaglycone deacetylase orf2; PDBTitle: the crystal structure of the zinc inhibited form of2 teicoplanin deacetylase orf2 13 c3ghyA_ 76.7 18 PDB header:oxidoreductase Chain: A: PDB Molecule:ketopantoate reductase protein; PDBTitle: crystal structure of a putative ketopantoate reductase from ralstonia2 solanacearum molk2 14 d2nv0a1 75.9 18 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 15 d1xhfa1 71.0 8 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 16 c3r0jA_ 69.4 12 PDB header:dna binding protein Chain: A: PDB Molecule:possible two component system response transcriptional PDBTitle: structure of phop from mycobacterium tuberculosis 17 c2j48A_ 68.4 11 PDB header:transferase Chain: A: PDB Molecule:two-component sensor kinase; PDBTitle: nmr structure of the pseudo-receiver domain of the cika2 protein. 18 c2qr3A_ 67.0 9 PDB header:transcription Chain: A: PDB Molecule:two-component system response regulator; PDBTitle: crystal structure of the n-terminal signal receiver domain of two-2 component system response regulator from bacteroides fragilis 19 c3plnA_ 66.9 19 PDB header:oxidoreductase Chain: A: PDB Molecule:udp-glucose 6-dehydrogenase; PDBTitle: crystal structure of klebsiella pneumoniae udp-glucose 6-dehydrogenase2 complexed with udp-glucose 20 d1kgsa2 66.3 14 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 21 c3hdvB_ not modelled 64.7 14 PDB header:transcription regulator Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator receiver protein from2 pseudomonas putida 22 c1kgsA_ not modelled 64.3 14 PDB header:dna binding protein Chain: A: PDB Molecule:dna binding response regulator d; PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima 23 d1zesa1 not modelled 64.1 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 24 c3hdgE_ not modelled 63.6 14 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the n-terminal domain of an2 uncharacterized protein (ws1339) from wolinella3 succinogenes 25 c3grcD_ not modelled 62.4 14 PDB header:transferase Chain: D: PDB Molecule:sensor protein, kinase; PDBTitle: crystal structure of a sensor protein from polaromonas sp.2 js666 26 d1s8na_ not modelled 61.2 17 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 27 c3jteA_ not modelled 60.7 19 PDB header:protein binding Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver domain2 protein from clostridium thermocellum 28 c3crnA_ not modelled 60.7 15 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver domain protein, chey-like; PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1 29 c1ny5A_ not modelled 59.8 14 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state 30 c2ayxA_ not modelled 59.0 17 PDB header:transferase Chain: A: PDB Molecule:sensor kinase protein rcsc; PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain 31 d1ny5a1 not modelled 57.4 14 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 32 c2rjnA_ not modelled 57.2 5 PDB header:hydrolase Chain: A: PDB Molecule:response regulator receiver:metal-dependent PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis 33 c2qzjC_ not modelled 56.7 15 PDB header:transcription Chain: C: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of a two-component response regulator from2 clostridium difficile 34 c1ys7B_ not modelled 56.4 15 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulatory protein prra; PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+ 35 c3dfiA_ not modelled 56.1 14 PDB header:hydrolase Chain: A: PDB Molecule:pseudoaglycone deacetylase dbv21; PDBTitle: the crystal structure of antimicrobial reagent a40926 pseudoaglycone2 deacetylase dbv21 36 c3hv2B_ not modelled 56.1 5 PDB header:signaling protein Chain: B: PDB Molecule:response regulator/hd domain protein; PDBTitle: crystal structure of signal receiver domain of hd domain-2 containing protein from pseudomonas fluorescens pf-5 37 c2zwmA_ not modelled 55.9 15 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein yycf; PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis 38 c2cnwF_ not modelled 55.7 16 PDB header:signal recognition Chain: F: PDB Molecule:cell division protein ftsy; PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy 39 c2ixdB_ not modelled 55.1 11 PDB header:hydrolase Chain: B: PDB Molecule:lmbe-related protein; PDBTitle: crystal structure of the putative deacetylase bc1534 from2 bacilus cereus 40 c3nhmA_ not modelled 54.6 9 PDB header:signaling protein Chain: A: PDB Molecule:response regulator; PDBTitle: crystal structure of a response regulator from myxococcus xanthus 41 c3lwdA_ not modelled 53.8 23 PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of putative 6-phosphogluconolactonase (yp_574786.1)2 from chromohalobacter salexigens dsm 3043 at 1.88 a resolution 42 d1gsaa1 not modelled 51.3 26 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Prokaryotic glutathione synthetase, N-terminal domain 43 c3cg4A_ not modelled 51.0 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey-like); PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1 44 d1zh2a1 not modelled 50.3 11 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 45 c2iy3A_ not modelled 48.9 15 PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome 46 c3lteH_ not modelled 47.4 14 PDB header:transcription Chain: H: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator (signal receiver domain) from2 bermanella marisrubri 47 c3h1gA_ not modelled 47.3 14 PDB header:signaling protein Chain: A: PDB Molecule:chemotaxis protein chey homolog; PDBTitle: crystal structure of chey mutant t84a of helicobacter pylori 48 c3nhzA_ not modelled 46.7 18 PDB header:dna binding protein Chain: A: PDB Molecule:two component system transcriptional regulator mtra; PDBTitle: structure of n-terminal domain of mtra 49 c3b2nA_ not modelled 46.5 6 PDB header:transcription Chain: A: PDB Molecule:uncharacterized protein q99uf4; PDBTitle: crystal structure of dna-binding response regulator, luxr family, from2 staphylococcus aureus 50 c3dzdA_ not modelled 46.2 14 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state 51 d1ys7a2 not modelled 45.8 15 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 52 d1su1a_ not modelled 45.3 33 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like 53 c1su1A_ not modelled 45.3 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yfce; PDBTitle: structural and biochemical characterization of yfce, a2 phosphoesterase from e. coli 54 c3n53B_ not modelled 45.0 12 PDB header:transcription Chain: B: PDB Molecule:response regulator receiver modulated diguanylate cyclase; PDBTitle: crystal structure of a response regulator receiver modulated2 diguanylate cyclase from pelobacter carbinolicus 55 d1mvoa_ not modelled 44.2 22 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 56 c2j289_ not modelled 44.1 14 PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs 57 c1i8tB_ not modelled 43.9 17 PDB header:isomerase Chain: B: PDB Molecule:udp-galactopyranose mutase; PDBTitle: strcuture of udp-galactopyranose mutase from e.coli 58 c1pbtA_ not modelled 43.3 19 PDB header:hydrolase, oxidoreductase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: the crystal structure of tm1154, oxidoreductase, sol/devb2 family from thermotoga maritima 59 c2j37W_ not modelled 43.3 12 PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs 60 c3b9qA_ not modelled 43.2 10 PDB header:protein transport Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana 61 c2zayA_ not modelled 43.1 8 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator from desulfuromonas2 acetoxidans 62 d1vl1a_ not modelled 42.9 20 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:NagB-like 63 d1w25a1 not modelled 42.6 11 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 64 d2ayxa1 not modelled 42.6 17 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 65 d1yioa2 not modelled 42.4 20 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 66 c3f6cB_ not modelled 42.0 11 PDB header:dna binding protein Chain: B: PDB Molecule:positive transcription regulator evga; PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli 67 d1heya_ not modelled 41.8 17 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 68 d2a9pa1 not modelled 41.6 16 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 69 c3t6kB_ not modelled 41.0 14 PDB header:signaling protein Chain: B: PDB Molecule:response regulator receiver; PDBTitle: crystal structure of a hypothetical response regulator (caur_3799)2 from chloroflexus aurantiacus j-10-fl at 1.86 a resolution 70 c1zu4A_ not modelled 40.7 18 PDB header:protein transport Chain: A: PDB Molecule:ftsy; PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212 71 c1gshA_ not modelled 40.5 17 PDB header:glutathione biosynthesis ligase Chain: A: PDB Molecule:glutathione biosynthetic ligase; PDBTitle: structure of escherichia coli glutathione synthetase at ph 7.5 72 c3cg0A_ not modelled 40.0 14 PDB header:lyase Chain: A: PDB Molecule:response regulator receiver modulated diguanylate cyclase PDBTitle: crystal structure of signal receiver domain of modulated diguanylate2 cyclase from desulfovibrio desulfuricans g20, an example of alternate3 folding 73 d1peya_ not modelled 39.7 15 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 74 c2rdmB_ not modelled 39.5 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver protein from2 sinorhizobium medicae wsm419 75 d1j8yf2 not modelled 39.0 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 76 c3smaD_ not modelled 38.5 32 PDB header:transferase Chain: D: PDB Molecule:frbf; PDBTitle: a new n-acetyltransferase fold in the structure and mechanism of the2 phosphonate biosynthetic enzyme frbf 77 c2j7pA_ not modelled 38.1 15 PDB header:signal recognition Chain: A: PDB Molecule:signal recognition particle protein; PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy 78 d1krwa_ not modelled 37.5 15 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 79 d2nyga1 not modelled 37.5 28 Fold:TTHA0583/YokD-like Superfamily:TTHA0583/YokD-like Family:Aminoglycoside 3-N-acetyltransferase-like 80 d1mb3a_ not modelled 37.1 14 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 81 c3dmdA_ not modelled 36.9 15 PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle receptor; PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus 82 c1j8yF_ not modelled 36.6 7 PDB header:signaling protein Chain: F: PDB Molecule:signal recognition 54 kda protein; PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant 83 c2oqrA_ not modelled 36.2 16 PDB header:transcription,signaling protein Chain: A: PDB Molecule:sensory transduction protein regx3; PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis 84 c3cu5B_ not modelled 35.3 14 PDB header:transcription regulator Chain: B: PDB Molecule:two component transcriptional regulator, arac family; PDBTitle: crystal structure of a two component transcriptional regulator arac2 from clostridium phytofermentans isdg 85 c3khyA_ not modelled 34.9 14 PDB header:transferase Chain: A: PDB Molecule:propionate kinase; PDBTitle: crystal structure of a propionate kinase from francisella2 tularensis subsp. tularensis schu s4 86 c2hqoA_ not modelled 34.6 13 PDB header:signaling protein Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism 87 c2qy9A_ not modelled 34.4 12 PDB header:protein transport Chain: A: PDB Molecule:cell division protein ftsy; PDBTitle: structure of the ng+1 construct of the e. coli srp receptor2 ftsy 88 c3lhiA_ not modelled 34.0 21 PDB header:hydrolase Chain: A: PDB Molecule:putative 6-phosphogluconolactonase; PDBTitle: crystal structure of putative 6-2 phosphogluconolactonase(yp_207848.1) from neisseria3 gonorrhoeae fa 1090 at 1.33 a resolution 89 c2og2A_ not modelled 33.0 12 PDB header:protein transport Chain: A: PDB Molecule:putative signal recognition particle receptor; PDBTitle: crystal structure of chloroplast ftsy from arabidopsis2 thaliana 90 d2a9va1 not modelled 32.4 17 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 91 c3qfnA_ not modelled 31.9 44 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of streptococcal asymmetric ap4a hydrolase and2 phosphodiesterase spr1479/saph in complex with inorganic phosphate 92 d1p2fa2 not modelled 31.0 17 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 93 c3e4fB_ not modelled 30.9 23 PDB header:transferase Chain: B: PDB Molecule:aminoglycoside n3-acetyltransferase; PDBTitle: crystal structure of ba2930- a putative aminoglycoside n3-2 acetyltransferase from bacillus anthracis 94 c3nwpA_ not modelled 30.9 19 PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of a 6-phosphogluconolactonase (sbal_2240) from2 shewanella baltica os155 at 1.40 a resolution 95 d2pl1a1 not modelled 30.8 8 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 96 c2yhsA_ not modelled 30.6 12 PDB header:cell cycle Chain: A: PDB Molecule:cell division protein ftsy; PDBTitle: structure of the e. coli srp receptor ftsy 97 c3dm5A_ not modelled 30.6 13 PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. 98 c3gt7A_ not modelled 30.2 14 PDB header:hydrolase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of signal receiver domain of signal2 transduction histidine kinase from syntrophus3 aciditrophicus 99 c1tuuA_ not modelled 30.1 18 PDB header:transferase Chain: A: PDB Molecule:acetate kinase; PDBTitle: acetate kinase crystallized with atpgs 100 c1w25B_ not modelled 29.7 11 PDB header:signaling protein Chain: B: PDB Molecule:stalked-cell differentiation controlling protein; PDBTitle: response regulator pled in complex with c-digmp 101 d1g99a2 not modelled 29.1 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 102 c3cfyA_ not modelled 29.1 6 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative luxo repressor protein; PDBTitle: crystal structure of signal receiver domain of putative luxo2 repressor protein from vibrio parahaemolyticus 103 d1u0sy_ not modelled 29.1 6 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 104 c2jk1A_ not modelled 28.6 11 PDB header:dna-binding Chain: A: PDB Molecule:hydrogenase transcriptional regulatory protein hupr1; PDBTitle: crystal structure of the wild-type hupr receiver domain 105 c2iirJ_ not modelled 28.4 18 PDB header:transferase Chain: J: PDB Molecule:acetate kinase; PDBTitle: acetate kinase from a hypothermophile thermotoga maritima 106 c1x3nA_ not modelled 27.6 17 PDB header:transferase Chain: A: PDB Molecule:propionate kinase; PDBTitle: crystal structure of amppnp bound propionate kinase (tdcd) from2 salmonella typhimurium 107 c3t8yA_ not modelled 27.4 14 PDB header:hydrolase Chain: A: PDB Molecule:chemotaxis response regulator protein-glutamate PDBTitle: crystal structure of the response regulator domain of thermotoga2 maritima cheb 108 c3lufB_ not modelled 26.6 15 PDB header:signaling protein Chain: B: PDB Molecule:two-component system response regulator/ggdef PDBTitle: structure of probable two-component system response2 regulator/ggdef domain protein 109 c3eq2A_ not modelled 25.9 17 PDB header:signaling protein Chain: A: PDB Molecule:probable two-component response regulator; PDBTitle: structure of hexagonal crystal form of pseudomonas2 aeruginosa rssb 110 c3c3wB_ not modelled 25.0 14 PDB header:transcription Chain: B: PDB Molecule:two component transcriptional regulatory protein devr; PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr 111 c3dojA_ not modelled 25.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:dehydrogenase-like protein; PDBTitle: structure of glyoxylate reductase 1 from arabidopsis2 (atglyr1) 112 c2gwrA_ not modelled 24.8 18 PDB header:signaling protein Chain: A: PDB Molecule:dna-binding response regulator mtra; PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis 113 d1dbwa_ not modelled 24.3 15 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 114 d1p6qa_ not modelled 23.6 15 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 115 d2bona1 not modelled 23.2 23 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 116 d1v4aa2 not modelled 23.0 16 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:GlnE-like domain 117 c3i4fD_ not modelled 22.9 14 PDB header:oxidoreductase Chain: D: PDB Molecule:3-oxoacyl-[acyl-carrier protein] reductase; PDBTitle: structure of putative 3-oxoacyl-reductase from bacillus thuringiensis 118 d1jbea_ not modelled 21.9 14 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 119 c2obnA_ not modelled 21.8 13 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a duf1611 family protein (ava_3511) from anabaena2 variabilis atcc 29413 at 2.30 a resolution 120 d1xpja_ not modelled 21.4 14 Fold:HAD-like Superfamily:HAD-like Family:Hypothetical protein VC0232

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0