Secondary structure and disorder prediction

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Sequence		M	N	L	S	R	Q	E	Q	H	T	L	H	V	L	A	K	G	R	R	I	A	H	V	R	D	S	S	G	R	V	T	S	V	E	C	Y	S	R	E	G	L	L	L	T	D	C	T	L	A	V	F	K	K	L	K	T	K	K	L	I
Secondary structure
SS confidence
Disorder		?	?	?	?																		?	?	?	?																															?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Sequence		K	S	V	N	G	Q	P	Y	R	I	N	T	T	E	L	N	K	V	R	A	Q	L	D	N	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?												?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2dql chain A Region: 49 - 83 Aligned: 35 Modelled: 35 Confidence: 62.2% Identity: 14% PDB header:circadian clock protein Chain: A: PDB Molecule:pex protein; PDBTitle: crytal structure of the circadian clock associated protein2 pex from anabaena Phyre2 PDB 2esh chain A domain 1 Region: 50 - 83 Aligned: 34 Modelled: 34 Confidence: 57.2% Identity: 26% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: PadR-like Phyre2 PDB 3l7w chain A Region: 50 - 83 Aligned: 34 Modelled: 34 Confidence: 49.3% Identity: 15% PDB header:transcription Chain: A: PDB Molecule:putative uncharacterized protein smu.1704; PDBTitle: the crystal structure of smu.1704 from streptococcus mutans ua159 Phyre2 PDB 3elk chain A Region: 49 - 78 Aligned: 30 Modelled: 30 Confidence: 47.9% Identity: 30% PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator ta0346; PDBTitle: crystal structure of putative transcriptional regulator ta0346 from2 thermoplasma acidophilum Phyre2 PDB 2y75 chain F Region: 1 - 72 Aligned: 67 Modelled: 67 Confidence: 46.8% Identity: 16% PDB header:transcription Chain: F: PDB Molecule:hth-type transcriptional regulator cymr; PDBTitle: the structure of cymr (yrzc) the global cysteine regulator2 of b. subtilis Phyre2 PDB 2e1n chain A Region: 49 - 79 Aligned: 31 Modelled: 31 Confidence: 46.2% Identity: 19% PDB header:circadian clock protein Chain: A: PDB Molecule:pex; PDBTitle: crystal structure of the cyanobacterium circadian clock modifier pex Phyre2 PDB 3b73 chain A Region: 52 - 83 Aligned: 32 Modelled: 32 Confidence: 45.3% Identity: 22% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phih1 repressor-like protein; PDBTitle: crystal structure of the phih1 repressor-like protein from2 haloarcula marismortui Phyre2 PDB 3l9f chain D Region: 49 - 82 Aligned: 34 Modelled: 34 Confidence: 40.9% Identity: 26% PDB header:transcription regulator Chain: D: PDB Molecule:putative uncharacterized protein smu.1604c; PDBTitle: the crystal structure of smu.1604c from streptococcus mutans ua159 Phyre2 PDB 2fbi chain A domain 1 Region: 1 - 59 Aligned: 59 Modelled: 59 Confidence: 36.7% Identity: 8% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: MarR-like transcriptional regulators Phyre2 PDB 1ub9 chain A Region: 9 - 54 Aligned: 46 Modelled: 46 Confidence: 33.0% Identity: 15% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: MarR-like transcriptional regulators Phyre2 PDB 1ylf chain A domain 1 Region: 50 - 72 Aligned: 21 Modelled: 21 Confidence: 29.8% Identity: 14% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Transcriptional regulator Rrf2 Phyre2 PDB 1yg2 chain A Region: 49 - 84 Aligned: 35 Modelled: 36 Confidence: 29.3% Identity: 14% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: PadR-like Phyre2 PDB 1r7j chain A Region: 51 - 79 Aligned: 28 Modelled: 29 Confidence: 27.9% Identity: 18% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Archaeal DNA-binding protein Phyre2 PDB 3k69 chain A Region: 50 - 72 Aligned: 23 Modelled: 23 Confidence: 27.7% Identity: 13% PDB header:transcription Chain: A: PDB Molecule:putative transcription regulator; PDBTitle: crystal structure of a putative transcriptional regulator (lp_0360)2 from lactobacillus plantarum at 1.95 a resolution Phyre2 PDB 3rhe chain A Region: 17 - 36 Aligned: 20 Modelled: 20 Confidence: 25.6% Identity: 10% PDB header:oxidoreductase Chain: A: PDB Molecule:nad-dependent benzaldehyde dehydrogenase; PDBTitle: the crystal structure of nad-dependent benzaldehyde dehydrogenase from2 legionella pneumophila Phyre2 PDB 3hhh chain A Region: 9 - 56 Aligned: 48 Modelled: 48 Confidence: 24.8% Identity: 13% PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, padr family; PDBTitle: crystal structure of transcriptional regulator, a member of padr2 family, from enterococcus faecalis v583 Phyre2 PDB 3f8f chain A Region: 9 - 56 Aligned: 48 Modelled: 48 Confidence: 22.8% Identity: 10% PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, padr-like family; PDBTitle: crystal structure of multidrug binding transcriptional regulator lmrr2 complexed with daunomycin Phyre2 PDB 3oe3 chain B Region: 15 - 49 Aligned: 31 Modelled: 35 Confidence: 20.2% Identity: 13% PDB header:hydrolase inhibitor Chain: B: PDB Molecule:putative periplasmic protein; PDBTitle: crystal structure of plic-st, periplasmic lysozyme inhibitor of c-type2 lysozyme from salmonella typhimurium Phyre2 PDB 3e6m chain D Region: 1 - 59 Aligned: 59 Modelled: 59 Confidence: 20.0% Identity: 8% PDB header:transcription regulator Chain: D: PDB Molecule:marr family transcriptional regulator; PDBTitle: the crystal structure of a marr family transcriptional2 regulator from silicibacter pomeroyi dss. Phyre2 PDB 3ri2 chain B Region: 9 - 56 Aligned: 48 Modelled: 48 Confidence: 19.0% Identity: 19% PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, padr-like family; PDBTitle: crystal structure of padr family transcriptional regulator from2 eggerthella lenta dsm 2243 Phyre2 1 c2dqlA_ 2 d2esha1 3 c3l7wA_ 4 c3elkA_ 5 c2y75F_ 6 c2e1nA_ 7 c3b73A_ 8 c3l9fD_ 9 d2fbia1 10 d1ub9a_ 11 d1ylfa1 12 d1yg2a_ 13 d1r7ja_ 14 c3k69A_ 15 c3rheA_ 16 c3hhhA_ 17 c3f8fA_ 18 c3oe3B_ 19 c3e6mD_ 20 c3ri2B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2dqlA_ 62.2 14 PDB header:circadian clock protein Chain: A: PDB Molecule:pex protein; PDBTitle: crytal structure of the circadian clock associated protein2 pex from anabaena 2 d2esha1 57.2 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PadR-like 3 c3l7wA_ 49.3 15 PDB header:transcription Chain: A: PDB Molecule:putative uncharacterized protein smu.1704; PDBTitle: the crystal structure of smu.1704 from streptococcus mutans ua159 4 c3elkA_ 47.9 30 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator ta0346; PDBTitle: crystal structure of putative transcriptional regulator ta0346 from2 thermoplasma acidophilum 5 c2y75F_ 46.8 16 PDB header:transcription Chain: F: PDB Molecule:hth-type transcriptional regulator cymr; PDBTitle: the structure of cymr (yrzc) the global cysteine regulator2 of b. subtilis 6 c2e1nA_ 46.2 19 PDB header:circadian clock protein Chain: A: PDB Molecule:pex; PDBTitle: crystal structure of the cyanobacterium circadian clock modifier pex 7 c3b73A_ 45.3 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phih1 repressor-like protein; PDBTitle: crystal structure of the phih1 repressor-like protein from2 haloarcula marismortui 8 c3l9fD_ 40.9 26 PDB header:transcription regulator Chain: D: PDB Molecule:putative uncharacterized protein smu.1604c; PDBTitle: the crystal structure of smu.1604c from streptococcus mutans ua159 9 d2fbia1 36.7 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 10 d1ub9a_ 33.0 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 11 d1ylfa1 29.8 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator Rrf2 12 d1yg2a_ 29.3 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PadR-like 13 d1r7ja_ 27.9 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Archaeal DNA-binding protein 14 c3k69A_ 27.7 13 PDB header:transcription Chain: A: PDB Molecule:putative transcription regulator; PDBTitle: crystal structure of a putative transcriptional regulator (lp_0360)2 from lactobacillus plantarum at 1.95 a resolution 15 c3rheA_ 25.6 10 PDB header:oxidoreductase Chain: A: PDB Molecule:nad-dependent benzaldehyde dehydrogenase; PDBTitle: the crystal structure of nad-dependent benzaldehyde dehydrogenase from2 legionella pneumophila 16 c3hhhA_ 24.8 13 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, padr family; PDBTitle: crystal structure of transcriptional regulator, a member of padr2 family, from enterococcus faecalis v583 17 c3f8fA_ 22.8 10 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, padr-like family; PDBTitle: crystal structure of multidrug binding transcriptional regulator lmrr2 complexed with daunomycin 18 c3oe3B_ 20.2 13 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:putative periplasmic protein; PDBTitle: crystal structure of plic-st, periplasmic lysozyme inhibitor of c-type2 lysozyme from salmonella typhimurium 19 c3e6mD_ 20.0 8 PDB header:transcription regulator Chain: D: PDB Molecule:marr family transcriptional regulator; PDBTitle: the crystal structure of a marr family transcriptional2 regulator from silicibacter pomeroyi dss. 20 c3ri2B_ 19.0 19 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, padr-like family; PDBTitle: crystal structure of padr family transcriptional regulator from2 eggerthella lenta dsm 2243 21 d1njha_ not modelled 18.4 38 Fold:Hypothetical protein YojF Superfamily:Hypothetical protein YojF Family:Hypothetical protein YojF 22 c3lwfD_ not modelled 17.7 26 PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator (np_470886.1)2 from listeria innocua at 2.06 a resolution 23 c3nquA_ not modelled 17.4 16 PDB header:dna binding protein Chain: A: PDB Molecule:histone h3-like centromeric protein a; PDBTitle: crystal structure of partially trypsinized (cenp-a/h4)2 heterotetramer 24 d1xmaa_ not modelled 16.2 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PadR-like 25 c1xmaA_ not modelled 16.2 13 PDB header:transcription Chain: A: PDB Molecule:predicted transcriptional regulator; PDBTitle: structure of a transcriptional regulator from clostridium thermocellum2 cth-833 26 d2fbha1 not modelled 16.1 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 27 c2v79B_ not modelled 16.0 16 PDB header:dna-binding protein Chain: B: PDB Molecule:dna replication protein dnad; PDBTitle: crystal structure of the n-terminal domain of dnad from2 bacillus subtilis 28 c3nqjA_ not modelled 15.1 16 PDB header:dna binding protein Chain: A: PDB Molecule:histone h3-like centromeric protein a; PDBTitle: crystal structure of (cenp-a/h4)2 heterotetramer 29 c1g3wA_ not modelled 14.6 9 PDB header:gene regulation Chain: A: PDB Molecule:diphtheria toxin repressor; PDBTitle: cd-cys102ser dtxr 30 c1fx7C_ not modelled 14.5 3 PDB header:signaling protein Chain: C: PDB Molecule:iron-dependent repressor ider; PDBTitle: crystal structure of the iron-dependent regulator (ider)2 from mycobacterium tuberculosis 31 c2h09A_ not modelled 14.5 16 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator mntr; PDBTitle: crystal structure of diphtheria toxin repressor like protein2 from e. coli 32 d1lj9a_ not modelled 14.0 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 33 c2hw4A_ not modelled 13.2 26 PDB header:structural genomics, hydrolase Chain: A: PDB Molecule:14 kda phosphohistidine phosphatase; PDBTitle: crystal structure of human phosphohistidine phosphatase 34 d2etha1 not modelled 13.1 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 35 d1oj5a_ not modelled 12.8 14 Fold:Profilin-like Superfamily:PYP-like sensor domain (PAS domain) Family:PAS domain of steroid receptor coactivator 1A, NCo-A1 36 d1bmlc3 not modelled 12.3 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:Staphylokinase/streptokinase Family:Staphylokinase/streptokinase 37 c1f5tA_ not modelled 12.0 6 PDB header:transcription/dna Chain: A: PDB Molecule:diphtheria toxin repressor; PDBTitle: diphtheria tox repressor (c102d mutant) complexed with2 nickel and dtxr consensus binding sequence 38 d1w8ia_ not modelled 11.8 30 Fold:PIN domain-like Superfamily:PIN domain-like Family:PIN domain 39 c3tbiB_ not modelled 11.8 37 PDB header:transcription Chain: B: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of t4 gp33 bound to e. coli rnap beta-flap domain 40 d2bv6a1 not modelled 11.5 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 41 d2hw4a1 not modelled 10.9 42 Fold:PHP14-like Superfamily:PHP14-like Family:Janus/Ocnus 42 d1q0qa3 not modelled 10.5 29 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Dihydrodipicolinate reductase-like 43 d1k8wa3 not modelled 10.4 11 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 44 d2a61a1 not modelled 10.3 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 45 d1kuta_ not modelled 10.1 18 Fold:SAICAR synthase-like Superfamily:SAICAR synthase-like Family:SAICAR synthase 46 c2k06A_ not modelled 9.8 18 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of the aminoterminal domain of e. coli2 nusg 47 c2oqgA_ not modelled 9.7 33 PDB header:transcription Chain: A: PDB Molecule:possible transcriptional regulator, arsr family protein; PDBTitle: arsr-like transcriptional regulator from rhodococcus sp. rha1 48 c1t98B_ not modelled 9.6 12 PDB header:cell cycle Chain: B: PDB Molecule:chromosome partition protein mukf; PDBTitle: crystal structure of mukf(1-287) 49 c2it0A_ not modelled 9.5 3 PDB header:transcription/dna Chain: A: PDB Molecule:iron-dependent repressor ider; PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii 50 c2k4bA_ not modelled 9.4 18 PDB header:dna binding protein Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: copr repressor structure 51 c2yu3A_ not modelled 9.3 50 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase iii 39 kda PDBTitle: solution structure of the domain swapped wingedhelix in dna-2 directed rna polymerase iii 39 kda polypeptide 52 d2fbla1 not modelled 9.0 18 Fold:CYTH-like phosphatases Superfamily:CYTH-like phosphatases Family:CYTH domain 53 c2zxjB_ not modelled 8.7 24 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulatory protein walr; PDBTitle: crystal structure of yycf dna-binding domain from staphylococcus2 aureus 54 c3f6vA_ not modelled 8.6 24 PDB header:transcription regulator Chain: A: PDB Molecule:possible transcriptional regulator, arsr family PDBTitle: crystal structure of possible transcriptional regulator for2 arsenical resistance 55 c3hruA_ not modelled 8.4 23 PDB header:transcription Chain: A: PDB Molecule:metalloregulator scar; PDBTitle: crystal structure of scar with bound zn2+ 56 d2obpa1 not modelled 8.1 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ReutB4095-like 57 c3g3zA_ not modelled 7.8 11 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, marr family; PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis 58 d2foka2 not modelled 7.7 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Restriction endonuclease FokI, N-terminal (recognition) domain 59 c3h3hA_ not modelled 7.5 17 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized snoal-like protein; PDBTitle: crystal structure of a snoal-like protein of unknown function2 (bth_ii0226) from burkholderia thailandensis e264 at 1.60 a3 resolution 60 c3bpxB_ not modelled 7.5 20 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of marr 61 c3f6oB_ not modelled 7.3 18 PDB header:transcription regulator Chain: B: PDB Molecule:probable transcriptional regulator, arsr family PDBTitle: crystal structure of arsr family transcriptional regulator,2 rha00566 62 c2rnjA_ not modelled 6.9 40 PDB header:transcription Chain: A: PDB Molecule:response regulator protein vrar; PDBTitle: nmr structure of the s. aureus vrar dna binding domain 63 d1p4xa1 not modelled 6.6 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 64 d2v7fa1 not modelled 6.6 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Rps19E-like 65 d1gxqa_ not modelled 6.4 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 66 c2gxgA_ not modelled 6.4 15 PDB header:transcription Chain: A: PDB Molecule:146aa long hypothetical transcriptional regulator; PDBTitle: crystal structure of emrr homolog from hyperthermophilic archaea2 sulfolobus tokodaii strain7 67 c2h31A_ not modelled 6.4 10 PDB header:ligase, lyase Chain: A: PDB Molecule:multifunctional protein ade2; PDBTitle: crystal structure of human paics, a bifunctional carboxylase and2 synthetase in purine biosynthesis 68 d1xd7a_ not modelled 6.3 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator Rrf2 69 d2cfxa1 not modelled 6.1 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 70 d2dk5a1 not modelled 6.1 53 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:RPO3F domain-like 71 d3bwga1 not modelled 6.0 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:GntR-like transcriptional regulators 72 d1r0ka3 not modelled 5.8 29 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Dihydrodipicolinate reductase-like 73 c3euhB_ not modelled 5.8 13 PDB header:cell cycle Chain: B: PDB Molecule:chromosome partition protein mukf; PDBTitle: crystal structure of the muke-mukf complex 74 c3kreA_ not modelled 5.7 19 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylaminoimidazole-succinocarboxamide synthase; PDBTitle: crystal structure of phosphoribosylaminoimidazole-succinocarboxamide2 synthase from ehrlichia chaffeensis at 1.8a resolution 75 d1m15a1 not modelled 5.6 46 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 76 c2kfsA_ not modelled 5.6 18 PDB header:dna-binding protein Chain: A: PDB Molecule:conserved hypothetical regulatory protein; PDBTitle: nmr structure of rv2175c 77 c3iz6S_ not modelled 5.5 10 PDB header:ribosome Chain: S: PDB Molecule:40s ribosomal protein s19 (s19e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 78 c2eghA_ not modelled 5.4 29 PDB header:oxidoreductase Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase2 complexed with a magnesium ion, nadph and fosmidomycin 79 d1z91a1 not modelled 5.2 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 80 d3dxoa1 not modelled 5.1 25 Fold:Cystatin-like Superfamily:NTF2-like Family:Atu0744-like 81 d1zyba1 not modelled 5.1 28 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CAP C-terminal domain-like 82 d1crka1 not modelled 5.1 17 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0