Email l.a.kelley@imperial.ac.uk Description P0ADZ0 Date Thu Jan 5 11:22:07 GMT 2012 Unique Job ID 8b138deb78ecc8fd

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2zjrq1 100.0 47 Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:L23p 2 d2qamt1 100.0 100 Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:L23p 3 d2j01x1 100.0 43 Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:L23p 4 c2ww9K_ 100.0 42 PDB header:ribosome Chain: K: PDB Molecule:60s ribosomal protein l25; PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the2 yeast 80s ribosome 5 c2go54_ 99.9 39 PDB header:translation/rna Chain: 4: PDB Molecule:ribosomal protein l23; PDBTitle: structure of signal recognition particle receptor (sr) in2 complex with signal recognition particle (srp) and3 ribosome nascent chain complex 6 d1vqos1 99.9 40 Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:L23p 7 c2zkrs_ 99.9 40 PDB header:ribosomal protein/rna Chain: S: PDB Molecule:rna expansion segment es39 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 8 c4a17R_ 99.9 42 PDB header:ribosome Chain: R: PDB Molecule:rpl23a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2. 9 c1s1iT_ 99.9 47 PDB header:ribosome Chain: T: PDB Molecule:60s ribosomal protein l25; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 10 c3bboV_ 99.9 30 PDB header:ribosome Chain: V: PDB Molecule:ribosomal protein l23; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 11 d1wx7a1 80.9 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 12 d1yqba1 65.1 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 13 d1v86a_ 62.4 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 14 c2dzmA_ 59.4 15 PDB header:structural genomics unknown function Chain: A: PDB Molecule:fas-associated factor 1; PDBTitle: solution structure of the ubiquitin-like domain in human2 fas-associated factor 1 (hfaf1) 15 c2kanA_ 54.6 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ar3433a; PDBTitle: solution nmr structure of ubiquitin-like domain of2 arabidopsis thaliana protein at2g32350. northeast3 structural genomics consortium target ar3433a 16 c2ojrA_ 53.8 26 PDB header:protein binding Chain: A: PDB Molecule:ubiquitin; PDBTitle: structure of ubiquitin solved by sad using the lanthanide-2 binding tag 17 d1wx8a1 53.7 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 18 c2klcA_ 51.4 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquilin-1; PDBTitle: nmr solution structure of human ubiquitin-like domain of2 ubiquilin 1, northeast structural genomics consortium3 (nesg) target ht5a 19 c1yx5B_ 49.2 28 PDB header:hydrolase Chain: B: PDB Molecule:ubiquitin; PDBTitle: solution structure of s5a uim-1/ubiquitin complex 20 c1z2mA_ 48.2 15 PDB header:signaling protein Chain: A: PDB Molecule:interferon, alpha-inducible protein (clone ifi- PDBTitle: crystal structure of isg15, the interferon-induced2 ubiquitin cross reactive protein 21 d1wm3a_ not modelled 46.9 8 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 22 c2kd0A_ not modelled 46.4 23 PDB header:signaling protein Chain: A: PDB Molecule:lrr repeats and ubiquitin-like domain-containing PDBTitle: nmr solution structure of o64736 protein from arabidopsis2 thaliana. northeast structural genomics consortium mega3 target ar3445a 23 d1z2ma2 not modelled 44.2 26 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 24 d1bt0a_ not modelled 43.1 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 25 d1sifa_ not modelled 43.0 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 26 d2znvb1 not modelled 42.3 28 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 27 c2dziA_ not modelled 41.6 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquitin-like protein 4a; PDBTitle: 2dzi/solution structure of the n-terminal ubiquitin-like2 domain in human ubiquitin-like protein 4a (gdx) 28 c2kdiA_ not modelled 39.5 20 PDB header:signaling protein Chain: A: PDB Molecule:ubiquitin, vacuolar protein sorting-associated PDBTitle: solution structure of a ubiquitin/uim fusion protein 29 d2v94a1 not modelled 37.9 9 Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:Ribosomal protein S24e 30 d1wjua_ not modelled 36.5 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 31 c2w9nA_ not modelled 36.4 24 PDB header:cell cycle Chain: A: PDB Molecule:ubiquitin; PDBTitle: crystal structure of linear di-ubiquitin 32 d1v5oa_ not modelled 36.0 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 33 d1zkha1 not modelled 35.2 9 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 34 d2bwfa1 not modelled 34.7 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 35 d2g1da1 not modelled 33.9 19 Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:Ribosomal protein S24e 36 d1ndda_ not modelled 32.1 11 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 37 d1wh3a_ not modelled 31.7 3 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 38 d1wx9a1 not modelled 30.1 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 39 c2kk8A_ not modelled 29.5 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein at4g05270; PDBTitle: nmr solution structure of a putative uncharacterized protein2 obtained from arabidopsis thaliana: northeast structural3 genomics consortium target ar3449a 40 c2jxxA_ not modelled 29.4 14 PDB header:protein binding Chain: A: PDB Molecule:nfatc2-interacting protein; PDBTitle: nmr solution structure of ubiquitin-like domain of2 nfatc2ip. northeast structural genomics consortium target3 hr5627 41 d1v2ya_ not modelled 28.9 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 42 d2zeqa1 not modelled 28.7 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 43 c3m62B_ not modelled 27.2 17 PDB header:ligase/protein binding Chain: B: PDB Molecule:uv excision repair protein rad23; PDBTitle: crystal structure of ufd2 in complex with the ubiquitin-like (ubl)2 domain of rad23 44 c2kjrA_ not modelled 26.5 28 PDB header:chaperone Chain: A: PDB Molecule:cg11242; PDBTitle: solution nmr structure of the n-terminal ubiquitin-like2 domain from tubulin-binding cofactor b, cg11242, from3 drosophila melanogaster. northeast structural genomics4 consortium target fr629a (residues 8-92) 45 d1j8ca_ not modelled 25.9 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 46 c3m63B_ not modelled 25.0 24 PDB header:ligase/protein binding Chain: B: PDB Molecule:ubiquitin domain-containing protein dsk2; PDBTitle: crystal structure of ufd2 in complex with the ubiquitin-like (ubl)2 domain of dsk2 47 d1ywxa1 not modelled 24.8 14 Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:Ribosomal protein S24e 48 d1c3ta_ not modelled 24.5 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 49 d1ogwa_ not modelled 24.4 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 50 d2fnjb1 not modelled 24.2 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 51 c2ekeC_ not modelled 23.5 18 PDB header:ligase/protein binding Chain: C: PDB Molecule:ubiquitin-like protein smt3; PDBTitle: structure of a sumo-binding-motif mimic bound to smt3p-2 ubc9p: conservation of a noncovalent ubiquitin-like3 protein-e2 complex as a platform for selective4 interactions within a sumo pathway 52 c2l7rA_ not modelled 22.6 29 PDB header:protein binding Chain: A: PDB Molecule:ubiquitin-like protein fubi; PDBTitle: solution nmr structure of n-terminal ubiquitin-like domain of fubi, a2 ribosomal protein s30 precursor from homo sapiens. northeast3 structural genomics consortium (nesg) target hr6166 53 d1ttna1 not modelled 21.6 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 54 c1ttnA_ not modelled 21.6 17 PDB header:signaling protein Chain: A: PDB Molecule:dendritic cell-derived ubiquitin-like protein; PDBTitle: solution structure of the ubiquitin-like domain of human dc-2 ubp from dendritic cells 55 d1ud7a_ not modelled 21.0 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 56 d2faza1 not modelled 20.5 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 57 c2k25A_ not modelled 20.4 28 PDB header:unknown function Chain: A: PDB Molecule:ubb; PDBTitle: automated nmr structure of the ubb by fapsy 58 c3ai5A_ not modelled 20.3 28 PDB header:fluorescent protein, transcription Chain: A: PDB Molecule:yeast enhanced green fluorescent protein, ubiquitin; PDBTitle: crystal structure of yeast enhanced green fluorescent protein-2 ubiquitin fusion protein 59 c1s21A_ not modelled 20.0 29 PDB header:chaperone Chain: A: PDB Molecule:orf2; PDBTitle: crystal structure of avrpphf orf2, a type iii effector from2 p. syringae 60 d1s21a_ not modelled 20.0 29 Fold:ADP-ribosylation Superfamily:ADP-ribosylation Family:AvrPphF ORF2, a type III effector 61 d1v5ta_ not modelled 18.9 34 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 62 d1xn9a_ not modelled 18.8 7 Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:Ribosomal protein S24e 63 d1wy8a1 not modelled 18.1 32 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 64 c2o37A_ not modelled 18.0 34 PDB header:chaperone Chain: A: PDB Molecule:protein sis1; PDBTitle: j-domain of sis1 protein, hsp40 co-chaperone from2 saccharomyces cerevisiae. 65 d1uawa_ not modelled 17.4 12 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 66 d1wgga_ not modelled 17.3 22 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 67 d1iyfa_ not modelled 16.8 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 68 d1ckqa_ not modelled 15.8 16 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease EcoRI 69 c3p6yD_ not modelled 15.4 12 PDB header:rna binding protein/rna Chain: D: PDB Molecule:cleavage and polyadenylation specificity factor subunit 6; PDBTitle: cf im25-cf im68-uguaa complex 70 c2dgpA_ not modelled 14.0 10 PDB header:rna binding protein Chain: A: PDB Molecule:bruno-like 4, rna binding protein; PDBTitle: solution structure of the n-terminal rna binding domain in2 bruno-like 4 rna-binding protein 71 d1we7a_ not modelled 13.5 9 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 72 d2c9wb1 not modelled 13.2 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 73 d1v6ea_ not modelled 12.7 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 74 d2io3b1 not modelled 12.1 8 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 75 d1vqod1 not modelled 11.5 24 Fold:RL5-like Superfamily:RL5-like Family:Ribosomal protein L5 76 d1euvb_ not modelled 11.0 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 77 d1l3ka1 not modelled 11.0 10 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 78 d1twfc2 not modelled 10.8 33 Fold:Insert subdomain of RNA polymerase alpha subunit Superfamily:Insert subdomain of RNA polymerase alpha subunit Family:Insert subdomain of RNA polymerase alpha subunit 79 d1wjna_ not modelled 10.4 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 80 d1z2ma1 not modelled 10.1 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 81 c3izbU_ not modelled 9.3 17 PDB header:ribosome Chain: U: PDB Molecule:40s ribosomal protein s24; PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 82 c2xzmP_ not modelled 9.1 23 PDB header:ribosome Chain: P: PDB Molecule:rps24e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 83 c2divA_ not modelled 8.9 12 PDB header:rna binding protein Chain: A: PDB Molecule:trna selenocysteine associated protein; PDBTitle: solution structure of the rrm domain of trna selenocysteine2 associated protein 84 d1wi8a_ not modelled 8.9 15 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 85 c2gj2A_ not modelled 8.5 41 PDB header:metal binding protein Chain: A: PDB Molecule:wsv230; PDBTitle: crystal structure of vp9 from white spot syndrome virus 86 c1qzeA_ not modelled 8.4 17 PDB header:replication Chain: A: PDB Molecule:uv excision repair protein rad23 homolog a; PDBTitle: hhr23a protein structure based on residual dipolar coupling2 data 87 d1fxla2 not modelled 8.4 17 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 88 c2eqoA_ not modelled 8.1 50 PDB header:transcription Chain: A: PDB Molecule:tnf receptor-associated factor 3-interacting PDBTitle: solution structure of the stn_traf3ip1_nd domain of2 interleukin 13 receptor alpha 1-binding protein-1 [homo3 sapiens] 89 c2kqxA_ not modelled 7.8 29 PDB header:chaperone binding protein Chain: A: PDB Molecule:curved dna-binding protein; PDBTitle: nmr structure of the j-domain (residues 2-72) in the2 escherichia coli cbpa 90 d2u2fa_ not modelled 7.6 7 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 91 d1iura_ not modelled 7.3 24 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 92 d1whxa_ not modelled 7.3 15 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 93 d2j0111 not modelled 7.2 30 Fold:L28p-like Superfamily:L28p-like Family:Ribosomal protein L28 94 d1fxla1 not modelled 7.2 22 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 95 d1x5ua1 not modelled 7.1 12 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 96 d1q1va_ not modelled 7.0 17 Fold:Another 3-helical bundle Superfamily:DEK C-terminal domain Family:DEK C-terminal domain 97 d2cqda1 not modelled 7.0 24 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 98 c2lgwA_ not modelled 6.9 29 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 2; PDBTitle: solution structure of the j domain of hsj1a 99 c2ctpA_ not modelled 6.8 29 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 12; PDBTitle: solution structure of j-domain from human dnaj subfamily b2 menber 12