Email l.a.kelley@imperial.ac.uk Description P39321 Date Thu Jan 5 11:59:20 GMT 2012 Unique Job ID 895939f1ed3044d0

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1v54g_ 72.3 16 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIa Family:Mitochondrial cytochrome c oxidase subunit VIa 2 c3nb3C_ 68.0 17 PDB header:virus Chain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components 3 d1qjpa_ 67.7 17 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 4 c1pbyA_ 38.4 12 PDB header:oxidoreductase Chain: A: PDB Molecule:quinohemoprotein amine dehydrogenase 60 kda PDBTitle: structure of the phenylhydrazine adduct of the2 quinohemoprotein amine dehydrogenase from paracoccus3 denitrificans at 1.7 a resolution 5 d1p4ta_ 30.8 17 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 6 d1g90a_ 25.8 21 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 7 d1wuba_ 20.3 14 Fold:Streptavidin-like Superfamily:YceI-like Family:YceI-like 8 c2wjqA_ 18.7 12 PDB header:transport protein Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel PDBTitle: nanc porin structure in hexagonal crystal form. 9 d2olua1 12.3 17 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:PBP transglycosylase domain-like 10 c2jmmA_ 11.4 15 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein 11 d2oqoa1 11.0 24 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:PBP transglycosylase domain-like 12 c2lhfA_ 10.2 12 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein h1; PDBTitle: solution structure of outer membrane protein h (oprh) from p.2 aeruginosa in dhpc micelles 13 d1xrda1 9.8 14 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 14 c3petA_ 9.4 10 PDB header:cell adhesion Chain: A: PDB Molecule:putative adhesin; PDBTitle: crystal structure of a putative adhesin (bf0245) from bacteroides2 fragilis nctc 9343 at 2.07 a resolution 15 c2y69Q_ 9.1 14 PDB header:electron transport Chain: Q: PDB Molecule:cytochrome c oxidase subunit 4 isoform 1; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 16 d1v54d_ 8.8 14 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit IV Family:Mitochondrial cytochrome c oxidase subunit IV 17 c2x27X_ 8.7 19 PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein oprg; PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa 18 d1osma_ 8.1 18 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 19 c3lycL_ 7.9 14 PDB header:cell adhesion Chain: L: PDB Molecule:putative pectinase; PDBTitle: crystal structure of putative pectinase (yp_001304412.1) from2 parabacteroides distasonis atcc 8503 at 2.30 a resolution 20 d1efva2 7.7 27 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:C-terminal domain of the electron transfer flavoprotein alpha subunit 21 c2olvA_ not modelled 7.7 17 PDB header:transferase Chain: A: PDB Molecule:penicillin-binding protein 2; PDBTitle: structural insight into the transglycosylation step of bacterial cell2 wall biosynthesis : donor ligand complex 22 d2guka1 not modelled 7.5 18 Fold:PG1857-like Superfamily:PG1857-like Family:PG1857-like 23 c3dwkC_ not modelled 7.5 17 PDB header:transferase Chain: C: PDB Molecule:penicillin-binding protein 2; PDBTitle: identification of dynamic structural motifs involved in2 peptidoglycan glycosyltransfer 24 c3o0rC_ not modelled 7.2 17 PDB header:immune system/oxidoreductase Chain: C: PDB Molecule:nitric oxide reductase subunit c; PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment 25 d1m56d_ not modelled 7.1 10 Fold:Single transmembrane helix Superfamily:Bacterial aa3 type cytochrome c oxidase subunit IV Family:Bacterial aa3 type cytochrome c oxidase subunit IV 26 c2x4mD_ not modelled 7.1 18 PDB header:hydrolase Chain: D: PDB Molecule:coagulase/fibrinolysin; PDBTitle: yersinia pestis plasminogen activator pla 27 d1efpa2 not modelled 7.1 33 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:C-terminal domain of the electron transfer flavoprotein alpha subunit 28 c3uc0B_ not modelled 6.8 18 PDB header:viral protein/immune system Chain: B: PDB Molecule:envelope protein; PDBTitle: crystal structure of domain i of the envelope glycoprotein ectodomain2 from dengue virus serotype 4 in complex with the fab fragment of the3 chimpanzee monoclonal antibody 5h2 29 c3bryB_ not modelled 6.5 22 PDB header:transport protein Chain: B: PDB Molecule:tbux; PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux 30 d1pbya3 not modelled 6.5 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5 31 c2f1tB_ not modelled 6.4 14 PDB header:membrane protein Chain: B: PDB Molecule:outer membrane protein w; PDBTitle: outer membrane protein ompw 32 c3hd7A_ not modelled 6.2 12 PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 33 c2k4tA_ not modelled 6.2 13 PDB header:membrane protein,apoptosis Chain: A: PDB Molecule:voltage-dependent anion-selective channel PDBTitle: solution structure of human vdac-1 in ldao micelles 34 d1fsea_ not modelled 6.1 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators) 35 c1efpC_ not modelled 5.7 33 PDB header:electron transport Chain: C: PDB Molecule:protein (electron transfer flavoprotein); PDBTitle: electron transfer flavoprotein (etf) from paracoccus2 denitrificans 36 d1bvp11 not modelled 5.7 24 Fold:A virus capsid protein alpha-helical domain Superfamily:A virus capsid protein alpha-helical domain Family:Orbivirus capsid 37 d3clsd2 not modelled 5.5 27 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:C-terminal domain of the electron transfer flavoprotein alpha subunit 38 c1bvp5_ not modelled 5.4 24 PDB header:viral protein Chain: 5: PDB Molecule:bluetongue virus coat protein vp7; PDBTitle: the crystal structure of bluetongue virus vp7 39 d2p5zx1 not modelled 5.4 50 Fold:OB-fold Superfamily:gp5 N-terminal domain-like Family:gp4 N-terminal domain-like 40 d1ihma_ not modelled 5.4 27 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Caliciviridae-like VP 41 c1ljzB_ not modelled 5.4 67 PDB header:receptor, toxin Chain: B: PDB Molecule:acetylcholine receptor protein; PDBTitle: nmr structure of an achr-peptide (torpedo californica,2 alpha-subunit residues 182-202) in complex with alpha-3 bungarotoxin 42 c1ihmC_ not modelled 5.4 27 PDB header:virus Chain: C: PDB Molecule:capsid protein; PDBTitle: crystal structure analysis of norwalk virus capsid 43 c3ltgA_ not modelled 5.3 20 PDB header:transferase/transferase regulator Chain: A: PDB Molecule:epidermal growth factor receptor; PDBTitle: crystal structure of the drosophila epidermal growth factor receptor2 ectodomain complexed with a low affinity spitz mutant 44 c1qiuC_ not modelled 5.2 16 PDB header:fibre protein Chain: C: PDB Molecule:adenovirus fibre; PDBTitle: a triple beta-spiral in the adenovirus fibre shaft reveals2 a new structural motif for biological fibres