PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3lycL_

Fold library id	PDB Header	Molecule	Title
c3lycL_	PDB header: cell adhesion	Chain: L: PDB Molecule: putative pectinase;	PDBTitle: crystal structure of putative pectinase (yp_001304412.1)2 from parabacteroides distasonis atcc 8503 at 2.30 a3 resolution

Links to external resources
Added to library: Sun Aug 29 01:49:39 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G D G N I T T E N I P V S E Y D C L E L E G G G X V V N Y T Q S D A P E G L E I K T D R N I F E K Y E F N V E N H K L K I R P K K E F R K P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
S S
S S
T T T T
G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T E F X V T A N S R N L K K L A A A G S T H V N I N S P L Q A E E F E A G L A G S G I I Q F H D T A S F T N L K I E I A G S G D F V G H K V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
S
S S
S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y C E E L N G D X A G S N T I V L G G T V G I A E F S I A G S G T V R A F D C T X D E L E C K I A G S G D I E A F V V N K I K A E I A G S G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S S
S S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . .

Sequence S V K Y K G D P Q D I Q K K V X G S G K I E K V E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	D	G	N	I	T	T	E	N	I	P	V	S	E	Y	D	C	L	E	L	E	G	G	G	X	V	V	N	Y	T	Q	S	D	A	P	E	G	L	E	I	K	T	D	R	N	I	F	E	K	Y	E	F	N	V	E	N	H	K	L	K	I	R	P	K	K	E	F	R	K	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S													S							S	S									S	S										T	T											T	T								G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	E	F	X	V	T	A	N	S	R	N	L	K	K	L	A	A	A	G	S	T	H	V	N	I	N	S	P	L	Q	A	E	E	F	E	A	G	L	A	G	S	G	I	I	Q	F	H	D	T	A	S	F	T	N	L	K	I	E	I	A	G	S	G	D	F	V	G	H	K	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S									S	S							S													S	S							S													S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	C	E	E	L	N	G	D	X	A	G	S	N	T	I	V	L	G	G	T	V	G	I	A	E	F	S	I	A	G	S	G	T	V	R	A	F	D	C	T	X	D	E	L	E	C	K	I	A	G	S	G	D	I	E	A	F	V	V	N	K	I	K	A	E	I	A	G	S	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	S																		S	S																			S	S																	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Sequence	S	V	K	Y	K	G	D	P	Q	D	I	Q	K	K	V	X	G	S	G	K	I	E	K	V	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S			S								S	S