Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	K	H	L	F	T	S	E	S	V	S	E	G	H	P	D	K	I	A	D	Q	I	S	D	A	V	L	D	A	I	L	E	Q	D	P	K	A	R	V	A	C	E	T	Y	V	K	T	G	M	V	L	V	G	G	E	I	T	T	S
Secondary structure
SS confidence
Disorder		?	?	?	?			?		?		?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	W	V	D	I	E	E	I	T	R	N	T	V	R	E	I	G	Y	V	H	S	D	M	G	F	D	A	N	S	C	A	V	L	S	A	I	G	K	Q	S	P	D	I	N	Q	G	V	D	R	A	D	P	L	E	Q	G	A	G	D	Q
Secondary structure
SS confidence
Disorder																																										?	?					?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	L	M	F	G	Y	A	T	N	E	T	D	V	L	M	P	A	P	I	T	Y	A	H	R	L	V	Q	R	Q	A	E	V	R	K	N	G	T	L	P	W	L	R	P	D	A	K	S	Q	V	T	F	Q	Y	D	D	G	K	I	V	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	D	A	V	V	L	S	T	Q	H	S	E	E	I	D	Q	K	S	L	Q	E	A	V	M	E	E	I	I	K	P	I	L	P	A	E	W	L	T	S	A	T	K	F	F	I	N	P	T	G	R	F	V	I	G	G	P	M	G	D	C
Secondary structure
SS confidence
Disorder												?	?	?	?																																														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		G	L	T	G	R	K	I	I	V	D	T	Y	G	G	M	A	R	H	G	G	G	A	F	S	G	K	D	P	S	K	V	D	R	S	A	A	Y	A	A	R	Y	V	A	K	N	I	V	A	A	G	L	A	D	R	C	E	I	Q	V	S
Secondary structure
SS confidence
Disorder		?													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		Y	A	I	G	V	A	E	P	T	S	I	M	V	E	T	F	G	T	E	K	V	P	S	E	Q	L	T	L	L	V	R	E	F	F	D	L	R	P	Y	G	L	I	Q	M	L	D	L	L	H	P	I	Y	K	E	T	A	A	Y	G	H
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Sequence		F	G	R	E	H	F	P	W	E	K	T	D	K	A	Q	L	L	R	D	A	A	G	L	K
Secondary structure
SS confidence
Disorder																						?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1rg9 chain D Region: 2 - 384 Aligned: 383 Modelled: 383 Confidence: 100.0% Identity: 100% PDB header:transferase Chain: D: PDB Molecule:s-adenosylmethionine synthetase; PDBTitle: s-adenosylmethionine synthetase complexed with sam and ppnp Phyre2 PDB 2obv chain A Region: 1 - 375 Aligned: 375 Modelled: 375 Confidence: 100.0% Identity: 57% PDB header:transferase Chain: A: PDB Molecule:s-adenosylmethionine synthetase isoform type-1; PDBTitle: crystal structure of the human s-adenosylmethionine synthetase 1 in2 complex with the product Phyre2 PDB 3so4 chain C Region: 3 - 381 Aligned: 369 Modelled: 369 Confidence: 100.0% Identity: 52% PDB header:transferase Chain: C: PDB Molecule:methionine-adenosyltransferase; PDBTitle: methionine-adenosyltransferase from entamoeba histolytica Phyre2 PDB 3iml chain B Region: 4 - 382 Aligned: 355 Modelled: 355 Confidence: 100.0% Identity: 72% PDB header:transferase Chain: B: PDB Molecule:s-adenosylmethionine synthetase; PDBTitle: crystal structure of s-adenosylmethionine synthetase from burkholderia2 pseudomallei Phyre2 PDB 3rv2 chain B Region: 4 - 381 Aligned: 362 Modelled: 362 Confidence: 100.0% Identity: 62% PDB header:transferase Chain: B: PDB Molecule:s-adenosylmethionine synthase; PDBTitle: crystal structure of s-adenosylmethionine synthetase from2 mycobacterium marinum Phyre2 PDB 1mxa chain A domain 3 Region: 233 - 384 Aligned: 152 Modelled: 152 Confidence: 100.0% Identity: 100% Fold: S-adenosylmethionine synthetase Superfamily: S-adenosylmethionine synthetase Family: S-adenosylmethionine synthetase Phyre2 PDB 2p02 chain A domain 3 Region: 233 - 375 Aligned: 143 Modelled: 143 Confidence: 100.0% Identity: 62% Fold: S-adenosylmethionine synthetase Superfamily: S-adenosylmethionine synthetase Family: S-adenosylmethionine synthetase Phyre2 PDB 1qm4 chain A domain 3 Region: 233 - 375 Aligned: 143 Modelled: 143 Confidence: 100.0% Identity: 64% Fold: S-adenosylmethionine synthetase Superfamily: S-adenosylmethionine synthetase Family: S-adenosylmethionine synthetase Phyre2 PDB 1mxa chain A domain 2 Region: 109 - 232 Aligned: 124 Modelled: 124 Confidence: 100.0% Identity: 100% Fold: S-adenosylmethionine synthetase Superfamily: S-adenosylmethionine synthetase Family: S-adenosylmethionine synthetase Phyre2 PDB 2p02 chain A domain 2 Region: 111 - 232 Aligned: 122 Modelled: 122 Confidence: 100.0% Identity: 48% Fold: S-adenosylmethionine synthetase Superfamily: S-adenosylmethionine synthetase Family: S-adenosylmethionine synthetase Phyre2 PDB 1qm4 chain A domain 2 Region: 113 - 232 Aligned: 120 Modelled: 120 Confidence: 100.0% Identity: 49% Fold: S-adenosylmethionine synthetase Superfamily: S-adenosylmethionine synthetase Family: S-adenosylmethionine synthetase Phyre2 PDB 2p02 chain A domain 1 Region: 3 - 111 Aligned: 109 Modelled: 109 Confidence: 100.0% Identity: 61% Fold: S-adenosylmethionine synthetase Superfamily: S-adenosylmethionine synthetase Family: S-adenosylmethionine synthetase Phyre2 PDB 1mxa chain A domain 1 Region: 2 - 102 Aligned: 101 Modelled: 101 Confidence: 100.0% Identity: 100% Fold: S-adenosylmethionine synthetase Superfamily: S-adenosylmethionine synthetase Family: S-adenosylmethionine synthetase Phyre2 PDB 1qm4 chain A domain 1 Region: 3 - 101 Aligned: 99 Modelled: 99 Confidence: 100.0% Identity: 62% Fold: S-adenosylmethionine synthetase Superfamily: S-adenosylmethionine synthetase Family: S-adenosylmethionine synthetase Phyre2 PDB 3k8z chain D Region: 158 - 298 Aligned: 135 Modelled: 141 Confidence: 82.9% Identity: 13% PDB header:oxidoreductase Chain: D: PDB Molecule:nad-specific glutamate dehydrogenase; PDBTitle: crystal structure of gudb1 a decryptified secondary glutamate2 dehydrogenase from b. subtilis Phyre2 PDB 2dt5 chain A domain 1 Region: 317 - 383 Aligned: 53 Modelled: 67 Confidence: 82.1% Identity: 28% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Transcriptional repressor Rex, N-terminal domain Phyre2 PDB 2bma chain A Region: 158 - 298 Aligned: 136 Modelled: 141 Confidence: 56.4% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:glutamate dehydrogenase (nadp+); PDBTitle: the crystal structure of plasmodium falciparum glutamate2 dehydrogenase, a putative target for novel antimalarial3 drugs Phyre2 PDB 1w9h chain A domain 1 Region: 135 - 156 Aligned: 22 Modelled: 22 Confidence: 54.5% Identity: 23% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: PIWI domain Phyre2 PDB 3lvt chain A Region: 26 - 176 Aligned: 109 Modelled: 111 Confidence: 51.4% Identity: 22% PDB header:hydrolase Chain: A: PDB Molecule:glycosyl hydrolase, family 38; PDBTitle: the crystal structure of a protein in the glycosyl hydrolase2 family 38 from enterococcus faecalis to 2.55a Phyre2 PDB 2inr chain A Region: 118 - 214 Aligned: 89 Modelled: 97 Confidence: 48.9% Identity: 20% PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase 4 subunit a; PDBTitle: crystal structure of a 59 kda fragment of topoisomerase iv subunit a2 (grla) from staphylococcus aureus Phyre2 1 c1rg9D_ 2 c2obvA_ 3 c3so4C_ 4 c3imlB_ 5 c3rv2B_ 6 d1mxaa3 7 d2p02a3 8 d1qm4a3 9 d1mxaa2 10 d2p02a2 11 d1qm4a2 12 d2p02a1 13 d1mxaa1 14 d1qm4a1 15 c3k8zD_ 16 d2dt5a1 17 c2bmaA_ 18 d1w9ha1 19 c3lvtA_ 20 c2inrA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1rg9D_ 100.0 100 PDB header:transferase Chain: D: PDB Molecule:s-adenosylmethionine synthetase; PDBTitle: s-adenosylmethionine synthetase complexed with sam and ppnp 2 c2obvA_ 100.0 57 PDB header:transferase Chain: A: PDB Molecule:s-adenosylmethionine synthetase isoform type-1; PDBTitle: crystal structure of the human s-adenosylmethionine synthetase 1 in2 complex with the product 3 c3so4C_ 100.0 52 PDB header:transferase Chain: C: PDB Molecule:methionine-adenosyltransferase; PDBTitle: methionine-adenosyltransferase from entamoeba histolytica 4 c3imlB_ 100.0 72 PDB header:transferase Chain: B: PDB Molecule:s-adenosylmethionine synthetase; PDBTitle: crystal structure of s-adenosylmethionine synthetase from burkholderia2 pseudomallei 5 c3rv2B_ 100.0 62 PDB header:transferase Chain: B: PDB Molecule:s-adenosylmethionine synthase; PDBTitle: crystal structure of s-adenosylmethionine synthetase from2 mycobacterium marinum 6 d1mxaa3 100.0 100 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase 7 d2p02a3 100.0 62 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase 8 d1qm4a3 100.0 64 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase 9 d1mxaa2 100.0 100 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase 10 d2p02a2 100.0 48 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase 11 d1qm4a2 100.0 49 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase 12 d2p02a1 100.0 61 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase 13 d1mxaa1 100.0 100 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase 14 d1qm4a1 100.0 62 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase 15 c3k8zD_ 82.9 13 PDB header:oxidoreductase Chain: D: PDB Molecule:nad-specific glutamate dehydrogenase; PDBTitle: crystal structure of gudb1 a decryptified secondary glutamate2 dehydrogenase from b. subtilis 16 d2dt5a1 82.1 28 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional repressor Rex, N-terminal domain 17 c2bmaA_ 56.4 19 PDB header:oxidoreductase Chain: A: PDB Molecule:glutamate dehydrogenase (nadp+); PDBTitle: the crystal structure of plasmodium falciparum glutamate2 dehydrogenase, a putative target for novel antimalarial3 drugs 18 d1w9ha1 54.5 23 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:PIWI domain 19 c3lvtA_ 51.4 22 PDB header:hydrolase Chain: A: PDB Molecule:glycosyl hydrolase, family 38; PDBTitle: the crystal structure of a protein in the glycosyl hydrolase2 family 38 from enterococcus faecalis to 2.55a 20 c2inrA_ 48.9 20 PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase 4 subunit a; PDBTitle: crystal structure of a 59 kda fragment of topoisomerase iv subunit a2 (grla) from staphylococcus aureus 21 c2w42A_ not modelled 40.4 24 PDB header:protein/dna complex Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the structure of a piwi protein from archaeoglobus fulgidus2 complexed with a 16nt dna duplex. 22 d1u04a2 not modelled 39.0 31 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:PIWI domain 23 d1euza2 not modelled 36.1 18 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Aminoacid dehydrogenases 24 c3ketA_ not modelled 34.9 17 PDB header:transcription/dna Chain: A: PDB Molecule:redox-sensing transcriptional repressor rex; PDBTitle: crystal structure of a rex-family transcriptional regulatory protein2 from streptococcus agalactiae bound to a palindromic operator 25 d1kjna_ not modelled 34.4 29 Fold:Hypothetical protein MTH777 (MT0777) Superfamily:Hypothetical protein MTH777 (MT0777) Family:Hypothetical protein MTH777 (MT0777) 26 c3aoeC_ not modelled 31.1 20 PDB header:oxidoreductase Chain: C: PDB Molecule:glutamate dehydrogenase; PDBTitle: crystal structure of hetero-hexameric glutamate dehydrogenase from2 thermus thermophilus (leu bound form) 27 d2fiqa1 not modelled 28.4 19 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:GatZ-like 28 c2dt5A_ not modelled 27.9 28 PDB header:dna binding protein Chain: A: PDB Molecule:at-rich dna-binding protein; PDBTitle: crystal structure of ttha1657 (at-rich dna-binding protein) from2 thermus thermophilus hb8 29 d1to0a_ not modelled 24.0 60 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 30 d2fm8a1 not modelled 23.6 22 Fold:Secretion chaperone-like Superfamily:Type III secretory system chaperone-like Family:Type III secretory system chaperone 31 c2vofA_ not modelled 22.7 8 PDB header:apoptosis Chain: A: PDB Molecule:bcl-2-related protein a1; PDBTitle: structure of mouse a1 bound to the puma bh3-domain 32 d1vh0a_ not modelled 22.7 75 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 33 c1hrdA_ not modelled 22.2 19 PDB header:oxidoreductase Chain: A: PDB Molecule:glutamate dehydrogenase; PDBTitle: glutamate dehydrogenase 34 d1ns5a_ not modelled 22.0 50 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 35 d1o6da_ not modelled 21.3 63 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 36 d1b26a2 not modelled 20.9 23 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Aminoacid dehydrogenases 37 c2z51A_ not modelled 20.1 20 PDB header:metal transport Chain: A: PDB Molecule:nifu-like protein 2, chloroplast; PDBTitle: crystal structure of arabidopsis cnfu involved in iron-2 sulfur cluster biosynthesis 38 d1vkha_ not modelled 19.8 19 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Putative serine hydrolase Ydr428c 39 d1azpa_ not modelled 17.4 40 Fold:SH3-like barrel Superfamily:Chromo domain-like Family:"Histone-like" proteins from archaea 40 c1u04A_ not modelled 17.3 46 PDB header:hydrolase/gene regulation Chain: A: PDB Molecule:hypothetical protein pf0537; PDBTitle: crystal structure of full length argonaute from pyrococcus furiosus 41 c1v57A_ not modelled 16.5 26 PDB header:isomerase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbg; PDBTitle: crystal structure of the disulfide bond isomerase dsbg 42 c2jvfA_ not modelled 15.4 9 PDB header:de novo protein Chain: A: PDB Molecule:de novo protein m7; PDBTitle: solution structure of m7, a computationally-designed2 artificial protein 43 d1q33a_ not modelled 15.3 60 Fold:Nudix Superfamily:Nudix Family:MutT-like 44 c2bh7A_ not modelled 14.4 26 PDB header:hydrolase Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase; PDBTitle: crystal structure of a semet derivative of amid at 2.22 angstroms 45 d1gtma2 not modelled 14.1 13 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Aminoacid dehydrogenases 46 c3lwaA_ not modelled 13.9 21 PDB header:isomerase Chain: A: PDB Molecule:secreted thiol-disulfide isomerase; PDBTitle: the crystal structure of a secreted thiol-disulfide2 isomerase from corynebacterium glutamicum to 1.75a 47 c3h6nA_ not modelled 13.7 14 PDB header:signaling protein Chain: A: PDB Molecule:plexin-d1; PDBTitle: crystal structure of the ubiquitin-like domain of plexin d1 48 d2f9wa2 not modelled 13.5 50 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:CoaX-like 49 c2gjhA_ not modelled 13.1 18 PDB header:de novo protein Chain: A: PDB Molecule:designed protein; PDBTitle: nmr structure of cfr (c-terminal fragment of2 computationally designed novel-topology protein top7) 50 c2fmmE_ not modelled 13.0 21 PDB header:transcription Chain: E: PDB Molecule:protein emsy; PDBTitle: crystal structure of emsy-hp1 complex 51 d1lfda_ not modelled 12.9 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 52 d2fmme1 not modelled 12.9 21 Fold:ENT-like Superfamily:ENT-like Family:Emsy N terminal (ENT) domain-like 53 d1vhfa_ not modelled 12.8 11 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 54 d1t0ga_ not modelled 12.7 39 Fold:Cytochrome b5-like heme/steroid binding domain Superfamily:Cytochrome b5-like heme/steroid binding domain Family:Steroid-binding domain 55 c1wnkA_ not modelled 12.4 50 PDB header:transcription Chain: A: PDB Molecule:fibroin-modulator-binding-protein-1; PDBTitle: nmr structure of fmbp-1 tandem repeat 3 in 30%(v/v) tfe2 solution 56 d1uz3a1 not modelled 12.3 21 Fold:ENT-like Superfamily:ENT-like Family:Emsy N terminal (ENT) domain-like 57 d1knga_ not modelled 12.2 8 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 58 d1ztpa1 not modelled 12.0 16 Fold:eIF4e-like Superfamily:eIF4e-like Family:BLES03-like 59 c2jkzB_ not modelled 12.0 44 PDB header:transferase Chain: B: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase; PDBTitle: saccharomyces cerevisiae hypoxanthine-guanine2 phosphoribosyltransferase in complex with gmp (guanosine 5'3 -monophosphate) (orthorhombic crystal form) 60 d1p1la_ not modelled 11.5 32 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 61 d1yvua2 not modelled 11.5 18 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:PIWI domain 62 c2tmgD_ not modelled 11.4 18 PDB header:oxidoreductase Chain: D: PDB Molecule:protein (glutamate dehydrogenase); PDBTitle: thermotoga maritima glutamate dehydrogenase mutant s128r,2 t158e, n117r, s160e 63 d2bu3a1 not modelled 11.2 26 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Phytochelatin synthase 64 c2zfhA_ not modelled 11.1 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cuta; PDBTitle: crystal structure of putative cuta1 from homo sapiens at 2.05a2 resolution 65 c3kh0A_ not modelled 11.1 19 PDB header:signaling protein Chain: A: PDB Molecule:ral guanine nucleotide dissociation stimulator; PDBTitle: crystal structure of the ras-association (ra) domain of2 ralgds 66 c2zomC_ not modelled 11.0 26 PDB header:unknown function Chain: C: PDB Molecule:protein cuta, chloroplast, putative, expressed; PDBTitle: crystal structure of cuta1 from oryza sativa 67 d1ah4a_ not modelled 11.0 12 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 68 c1qysA_ not modelled 10.6 25 PDB header:de novo protein Chain: A: PDB Molecule:top7; PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold 69 c2wl2B_ not modelled 10.6 18 PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit a; PDBTitle: crystal structure of n-terminal domain of gyra with the2 antibiotic simocyclinone d8 70 d2bgxa2 not modelled 10.5 26 Fold:N-acetylmuramoyl-L-alanine amidase-like Superfamily:N-acetylmuramoyl-L-alanine amidase-like Family:N-acetylmuramoyl-L-alanine amidase-like 71 d1naqa_ not modelled 10.1 26 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 72 d1bf4a_ not modelled 10.0 48 Fold:SH3-like barrel Superfamily:Chromo domain-like Family:"Histone-like" proteins from archaea 73 d1rlfa_ not modelled 9.5 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 74 d1nzaa_ not modelled 9.4 42 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 75 c2btwA_ not modelled 9.2 26 PDB header:transferase Chain: A: PDB Molecule:alr0975 protein; PDBTitle: crystal structure of alr0975 76 c3ag7A_ not modelled 9.0 35 PDB header:plant protein Chain: A: PDB Molecule:putative uncharacterized protein f9e10.5; PDBTitle: an auxilin-like j-domain containing protein, jac1 j-domain 77 d2rgfa_ not modelled 9.0 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 78 c2nuhA_ not modelled 8.9 21 PDB header:unknown function Chain: A: PDB Molecule:periplasmic divalent cation tolerance protein; PDBTitle: crystal structure of cuta from the phytopathgen bacterium xylella2 fastidiosa 79 c3gdeA_ not modelled 8.9 18 PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: the closed conformation of atp-dependent dna ligase from2 archaeoglobus fulgidus 80 d3c9fa1 not modelled 8.8 16 Fold:5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain Superfamily:5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain Family:5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 81 c2kucA_ not modelled 8.7 13 PDB header:isomerase Chain: A: PDB Molecule:putative disulphide-isomerase; PDBTitle: solution structure of a putative disulphide-isomerase from bacteroides2 thetaiotaomicron 82 d1osce_ not modelled 8.7 26 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 83 c3b6nA_ not modelled 8.7 22 PDB header:lyase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate PDBTitle: crystal structure of 2c-methyl-d-erythritol 2,4-2 cyclodiphosphate synthase pv003920 from plasmodium vivax 84 c3lorB_ not modelled 8.6 14 PDB header:isomerase Chain: B: PDB Molecule:thiol-disulfide isomerase and thioredoxins; PDBTitle: the crystal structure of a thiol-disulfide isomerase from2 corynebacterium glutamicum to 2.2a 85 d1j03a_ not modelled 8.4 39 Fold:Cytochrome b5-like heme/steroid binding domain Superfamily:Cytochrome b5-like heme/steroid binding domain Family:Steroid-binding domain 86 d1hkoa_ not modelled 8.4 36 Fold:Cytochrome b5-like heme/steroid binding domain Superfamily:Cytochrome b5-like heme/steroid binding domain Family:Cytochrome b5 87 d2zfha1 not modelled 8.4 26 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 88 c1xk8A_ not modelled 8.4 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:divalent cation tolerant protein cuta; PDBTitle: divalent cation tolerant protein cuta from homo sapiens2 o60888 89 d1ukua_ not modelled 8.4 21 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 90 c2wnyB_ not modelled 8.2 17 PDB header:unknown function Chain: B: PDB Molecule:conserved protein mth689; PDBTitle: structure of mth689, a duf54 protein from methanothermobacter2 thermautotrophicus 91 d1c9ka_ not modelled 8.2 86 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 92 c3d4oA_ not modelled 8.1 44 PDB header:oxidoreductase Chain: A: PDB Molecule:dipicolinate synthase subunit a; PDBTitle: crystal structure of dipicolinate synthase subunit a (np_243269.1)2 from bacillus halodurans at 2.10 a resolution 93 d1mhyd_ not modelled 8.0 35 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 94 d1vjpa1 not modelled 7.9 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 95 c2hw2A_ not modelled 7.9 18 PDB header:transferase Chain: A: PDB Molecule:rifampin adp-ribosyl transferase; PDBTitle: crystal structure of rifampin adp-ribosyl transferase in2 complex with rifampin 96 c3s5pA_ not modelled 7.9 22 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase b rpib from giardia2 lamblia 97 c3ga2A_ not modelled 7.8 24 PDB header:hydrolase Chain: A: PDB Molecule:endonuclease v; PDBTitle: crystal structure of the endonuclease_v (bsu36170) from2 bacillus subtilis, northeast structural genomics3 consortium target sr624 98 d1kr4a_ not modelled 7.8 11 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 99 d1mtyd_ not modelled 7.7 41 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0