Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	T	P	T	F	D	T	I	E	A	Q	A	S	Y	G	I	G	L	Q	V	G	Q	Q	L	S	E	S	G	L	E	G	L	L	P	E	A	L	V	A	G	I	A	D	A	L	E	G	K	H	P	A	V	P	V	D	V	V	H	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?																				?	?	?	?		?														?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	L	R	E	I	H	E	R	A	D	A	V	R	R	Q	R	F	Q	A	M	A	A	E	G	V	K	Y	L	E	E	N	A	K	K	E	G	V	N	S	T	E	S	G	L	Q	F	R	V	I	N	Q	G	E	G	A	I	P	A	R	T
Secondary structure
SS confidence
Disorder																							?	?	?																?																	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	R	V	R	V	H	Y	T	G	K	L	I	D	G	T	V	F	D	S	S	V	A	R	G	E	P	A	E	F	P	V	N	G	V	I	P	G	W	I	E	A	L	T	L	M	P	V	G	S	K	W	E	L	T	I	P	Q	E	L	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Sequence		Y	G	E	R	G	A	G	A	S	I	P	P	F	S	T	L	V	F	E	V	E	L	L	E	I	L
Secondary structure
SS confidence
Disorder				?	?	?	?	?	?	?	?														?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1fd9 chain A Region: 8 - 205 Aligned: 197 Modelled: 198 Confidence: 100.0% Identity: 42% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 1q6h chain A Region: 5 - 205 Aligned: 199 Modelled: 201 Confidence: 100.0% Identity: 39% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 1q6u chain A Region: 5 - 205 Aligned: 198 Modelled: 201 Confidence: 100.0% Identity: 39% PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase fkpa; PDBTitle: crystal structure of fkpa from escherichia coli Phyre2 PDB 2vcd chain A Region: 74 - 205 Aligned: 132 Modelled: 132 Confidence: 100.0% Identity: 49% PDB header:isomerase Chain: A: PDB Molecule:outer membrane protein mip; PDBTitle: solution structure of the fkbp-domain of legionella2 pneumophila mip in complex with rapamycin Phyre2 PDB 1jvw chain A Region: 72 - 205 Aligned: 134 Modelled: 134 Confidence: 100.0% Identity: 46% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 3oe2 chain A Region: 74 - 205 Aligned: 129 Modelled: 132 Confidence: 100.0% Identity: 39% PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: 1.6 a crystal structure of peptidyl-prolyl cis-trans isomerase ppiase2 from pseudomonas syringae pv. tomato str. dc3000 (pspto dc3000) Phyre2 PDB 2lgo chain A Region: 92 - 205 Aligned: 114 Modelled: 114 Confidence: 100.0% Identity: 46% PDB header:isomerase Chain: A: PDB Molecule:fkbp; PDBTitle: solution nmr structure of a fkbp-type peptidyl-prolyl cis-trans2 isomerase from giardia lamblia, seattle structural genomics center3 for infectious disease target gilaa.00840.a Phyre2 PDB 2ke0 chain A Region: 94 - 205 Aligned: 112 Modelled: 112 Confidence: 100.0% Identity: 50% PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of peptidyl-prolyl cis-trans isomerase from2 burkholderia pseudomallei Phyre2 PDB 1yat chain A Region: 98 - 205 Aligned: 108 Modelled: 108 Confidence: 100.0% Identity: 47% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 2jwx chain A Region: 92 - 206 Aligned: 113 Modelled: 115 Confidence: 100.0% Identity: 26% PDB header:apoptosis, isomerase Chain: A: PDB Molecule:fk506-binding protein 8 variant; PDBTitle: solution structure of the n-terminal domain of human fkbp382 (fkbp38ntd) Phyre2 PDB 1q1c chain A domain 1 Region: 95 - 205 Aligned: 111 Modelled: 111 Confidence: 100.0% Identity: 45% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 1c9h chain A Region: 103 - 205 Aligned: 103 Modelled: 103 Confidence: 100.0% Identity: 40% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 1r9h chain A Region: 99 - 205 Aligned: 107 Modelled: 107 Confidence: 100.0% Identity: 38% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 2f4e chain B Region: 94 - 205 Aligned: 112 Modelled: 112 Confidence: 100.0% Identity: 21% PDB header:signaling protein Chain: B: PDB Molecule:atfkbp42; PDBTitle: n-terminal domain of fkbp42 from arabidopsis thaliana Phyre2 PDB 3o5f chain A Region: 99 - 205 Aligned: 107 Modelled: 107 Confidence: 100.0% Identity: 39% PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase fkbp5; PDBTitle: fk1 domain of fkbp51, crystal form vii Phyre2 PDB 2ppn chain A domain 1 Region: 103 - 205 Aligned: 103 Modelled: 103 Confidence: 100.0% Identity: 47% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 3b7x chain A Region: 86 - 206 Aligned: 116 Modelled: 121 Confidence: 100.0% Identity: 28% PDB header:isomerase Chain: A: PDB Molecule:fk506-binding protein 6; PDBTitle: crystal structure of human fk506-binding protein 6 Phyre2 PDB 1rou chain A Region: 96 - 205 Aligned: 110 Modelled: 110 Confidence: 100.0% Identity: 45% PDB header:rotamase (isomerase) Chain: A: PDB Molecule:fkbp59-i; PDBTitle: structure of fkbp59-i, the n-terminal domain of a 59 kda2 fk506-binding protein, nmr, 22 structures Phyre2 PDB 2vn1 chain A Region: 99 - 205 Aligned: 107 Modelled: 107 Confidence: 100.0% Identity: 40% PDB header:isomerase Chain: A: PDB Molecule:70 kda peptidylprolyl isomerase; PDBTitle: crystal structure of the fk506-binding domain of plasmodium2 falciparum fkbp35 in complex with fk506 Phyre2 PDB 1u79 chain A Region: 95 - 205 Aligned: 111 Modelled: 111 Confidence: 100.0% Identity: 40% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 1 d1fd9a_ 2 d1q6ha_ 3 c1q6uA_ 4 c2vcdA_ 5 d1jvwa_ 6 c3oe2A_ 7 c2lgoA_ 8 c2ke0A_ 9 d1yata_ 10 c2jwxA_ 11 d1q1ca1 12 d1c9ha_ 13 d1r9ha_ 14 c2f4eB_ 15 c3o5fA_ 16 d2ppna1 17 c3b7xA_ 18 c1rouA_ 19 c2vn1A_ 20 d1u79a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1fd9a_ 100.0 42 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 2 d1q6ha_ 100.0 39 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 3 c1q6uA_ 100.0 39 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase fkpa; PDBTitle: crystal structure of fkpa from escherichia coli 4 c2vcdA_ 100.0 49 PDB header:isomerase Chain: A: PDB Molecule:outer membrane protein mip; PDBTitle: solution structure of the fkbp-domain of legionella2 pneumophila mip in complex with rapamycin 5 d1jvwa_ 100.0 46 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 6 c3oe2A_ 100.0 39 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: 1.6 a crystal structure of peptidyl-prolyl cis-trans isomerase ppiase2 from pseudomonas syringae pv. tomato str. dc3000 (pspto dc3000) 7 c2lgoA_ 100.0 46 PDB header:isomerase Chain: A: PDB Molecule:fkbp; PDBTitle: solution nmr structure of a fkbp-type peptidyl-prolyl cis-trans2 isomerase from giardia lamblia, seattle structural genomics center3 for infectious disease target gilaa.00840.a 8 c2ke0A_ 100.0 50 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of peptidyl-prolyl cis-trans isomerase from2 burkholderia pseudomallei 9 d1yata_ 100.0 47 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 10 c2jwxA_ 100.0 26 PDB header:apoptosis, isomerase Chain: A: PDB Molecule:fk506-binding protein 8 variant; PDBTitle: solution structure of the n-terminal domain of human fkbp382 (fkbp38ntd) 11 d1q1ca1 100.0 45 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 12 d1c9ha_ 100.0 40 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 13 d1r9ha_ 100.0 38 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 14 c2f4eB_ 100.0 21 PDB header:signaling protein Chain: B: PDB Molecule:atfkbp42; PDBTitle: n-terminal domain of fkbp42 from arabidopsis thaliana 15 c3o5fA_ 100.0 39 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase fkbp5; PDBTitle: fk1 domain of fkbp51, crystal form vii 16 d2ppna1 100.0 47 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 17 c3b7xA_ 100.0 28 PDB header:isomerase Chain: A: PDB Molecule:fk506-binding protein 6; PDBTitle: crystal structure of human fk506-binding protein 6 18 c1rouA_ 100.0 45 PDB header:rotamase (isomerase) Chain: A: PDB Molecule:fkbp59-i; PDBTitle: structure of fkbp59-i, the n-terminal domain of a 59 kda2 fk506-binding protein, nmr, 22 structures 19 c2vn1A_ 100.0 40 PDB header:isomerase Chain: A: PDB Molecule:70 kda peptidylprolyl isomerase; PDBTitle: crystal structure of the fk506-binding domain of plasmodium2 falciparum fkbp35 in complex with fk506 20 d1u79a_ 100.0 40 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 21 d1kt0a3 not modelled 99.9 25 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 22 c3o5dB_ not modelled 99.9 39 PDB header:isomerase Chain: B: PDB Molecule:peptidyl-prolyl cis-trans isomerase fkbp5; PDBTitle: crystal structure of a fragment of fkbp51 comprising the fk1 and fk22 domains 23 d1kt1a3 not modelled 99.9 27 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 24 c1q1cA_ not modelled 99.9 44 PDB header:isomerase Chain: A: PDB Molecule:fk506-binding protein 4; PDBTitle: crystal structure of n(1-260) of human fkbp52 25 d1pbka_ not modelled 99.9 45 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 26 c2pbcD_ not modelled 99.9 51 PDB header:isomerase Chain: D: PDB Molecule:fk506-binding protein 2; PDBTitle: fk506-binding protein 2 27 c2d9fA_ not modelled 99.9 25 PDB header:isomerase Chain: A: PDB Molecule:fk506-binding protein 8 variant; PDBTitle: solution structure of ruh-047, an fkbp domain from human2 cdna 28 d1q1ca2 not modelled 99.9 28 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 29 c3jxvA_ not modelled 99.9 29 PDB header:isomerase Chain: A: PDB Molecule:70 kda peptidyl-prolyl isomerase; PDBTitle: crystal structure of the 3 fkbp domains of wheat fkbp73 30 c2if4A_ not modelled 99.9 21 PDB header:signaling protein Chain: A: PDB Molecule:atfkbp42; PDBTitle: crystal structure of a multi-domain immunophilin from2 arabidopsis thaliana 31 d1kt0a2 not modelled 99.9 38 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 32 d1kt1a2 not modelled 99.9 38 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 33 c1kt0A_ not modelled 99.8 26 PDB header:isomerase Chain: A: PDB Molecule:51 kda fk506-binding protein; PDBTitle: structure of the large fkbp-like protein, fkbp51, involved in steroid2 receptor complexes 34 c1qz2B_ not modelled 99.8 28 PDB header:isomerase/chaperone Chain: B: PDB Molecule:fk506-binding protein 4; PDBTitle: crystal structure of fkbp52 c-terminal domain complex with2 the c-terminal peptide meevd of hsp90 35 c2kr7A_ not modelled 99.7 25 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase slyd; PDBTitle: solution structure of helicobacter pylori slyd 36 c2k8iA_ not modelled 99.6 29 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of e.coli slyd 37 d1ix5a_ not modelled 99.6 37 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 38 c3pr9A_ not modelled 99.6 31 PDB header:chaperone Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 39 c2kfwA_ not modelled 99.6 28 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase PDBTitle: solution structure of full-length slyd from e.coli 40 c3prdA_ not modelled 99.6 27 PDB header:chaperone, isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 41 c3cgnA_ not modelled 99.4 33 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: crystal structure of thermophilic slyd 42 c1hxvA_ not modelled 99.4 25 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: ppiase domain of the mycoplasma genitalium trigger factor 43 d1hxva_ not modelled 99.4 25 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 44 d1l1pa_ not modelled 99.3 18 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 45 d1w26a3 not modelled 99.2 20 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 46 d1t11a3 not modelled 99.2 19 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 47 c1w26B_ not modelled 98.1 19 PDB header:chaperone Chain: B: PDB Molecule:trigger factor; PDBTitle: trigger factor in complex with the ribosome forms a2 molecular cradle for nascent proteins 48 c1t11A_ not modelled 97.9 19 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: trigger factor 49 c3gtyX_ not modelled 97.1 19 PDB header:chaperone/ribosomal protein Chain: X: PDB Molecule:trigger factor; PDBTitle: promiscuous substrate recognition in folding and assembly activities2 of the trigger factor chaperone 50 c3htxA_ not modelled 92.8 17 PDB header:transferase/rna Chain: A: PDB Molecule:hen1; PDBTitle: crystal structure of small rna methyltransferase hen1 51 d2diga1 not modelled 27.6 54 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 52 d1o65a_ not modelled 25.8 19 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:MOSC (MOCO sulphurase C-terminal) domain 53 c3a5zF_ not modelled 23.6 15 PDB header:ligase Chain: F: PDB Molecule:elongation factor p; PDBTitle: crystal structure of escherichia coli genx in complex with elongation2 factor p 54 d1ueba1 not modelled 23.0 14 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 55 c2jvfA_ not modelled 22.2 17 PDB header:de novo protein Chain: A: PDB Molecule:de novo protein m7; PDBTitle: solution structure of m7, a computationally-designed2 artificial protein 56 c2a2bA_ not modelled 21.9 40 PDB header:antibiotic Chain: A: PDB Molecule:bacteriocin curvacin a; PDBTitle: curvacin a 57 d1jnsa_ not modelled 21.0 19 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 58 c1qysA_ not modelled 20.8 17 PDB header:de novo protein Chain: A: PDB Molecule:top7; PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold 59 c3ogrA_ not modelled 18.7 11 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: complex structure of beta-galactosidase from trichoderma reesei with2 galactose 60 d2hd9a1 not modelled 18.6 22 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 61 d2pv2a1 not modelled 17.3 12 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 62 d1orua_ not modelled 17.1 32 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:MOSC (MOCO sulphurase C-terminal) domain 63 c3gpkA_ not modelled 16.2 5 PDB header:isomerase Chain: A: PDB Molecule:ppic-type peptidyl-prolyl cis-trans isomerase; PDBTitle: crystal structure of ppic-type peptidyl-prolyl cis-trans isomerase2 domain at 1.55a resolution. 64 d1fcda2 not modelled 15.4 16 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 65 d2ih2a1 not modelled 15.0 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:DNA methylase TaqI, N-terminal domain 66 d2f8la1 not modelled 14.0 7 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:N-6 DNA Methylase-like 67 c3k7cC_ not modelled 12.8 17 PDB header:protein binding Chain: C: PDB Molecule:putative ntf2-like transpeptidase; PDBTitle: crystal structure of putative ntf2-like transpeptidase (np_281412.1)2 from campylobacter jejuni at 2.00 a resolution 68 c2rqsA_ not modelled 12.4 21 PDB header:isomerase Chain: A: PDB Molecule:parvulin-like peptidyl-prolyl isomerase; PDBTitle: 3d structure of pin from the psychrophilic archeon cenarcheaum2 symbiosum (cspin) 69 d1j6ya_ not modelled 12.1 17 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 70 d1pina2 not modelled 10.9 17 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 71 d1m5ya3 not modelled 10.3 15 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 72 d1jqpa1 not modelled 10.0 11 Fold:Streptavidin-like Superfamily:Dipeptidyl peptidase I (cathepsin C), exclusion domain Family:Dipeptidyl peptidase I (cathepsin C), exclusion domain 73 c1xc6A_ not modelled 9.7 14 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: native structure of beta-galactosidase from penicillium sp. in complex2 with galactose 74 d2gycm1 not modelled 9.7 24 Fold:Ribonuclease H-like motif Superfamily:Translational machinery components Family:Ribosomal protein L18 and S11 75 d1j0ha2 not modelled 9.2 17 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 76 c2p5dA_ not modelled 8.5 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0310 protein mjecl36; PDBTitle: crystal structure of mjecl36 from methanocaldococcus2 jannaschii dsm 2661 77 d2qqra2 not modelled 7.7 21 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 78 d2qqsa2 not modelled 7.6 20 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 79 d1m7xa2 not modelled 6.8 26 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 80 c2eqmA_ not modelled 6.7 13 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 20-like 1; PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1 [homo sapiens] 81 c3bboQ_ not modelled 6.6 15 PDB header:ribosome Chain: Q: PDB Molecule:ribosomal protein l18; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 82 c1mh3A_ not modelled 6.6 20 PDB header:sugar binding, dna binding protein Chain: A: PDB Molecule:maltose binding-a1 homeodomain protein chimera; PDBTitle: maltose binding-a1 homeodomain protein chimera, crystal2 form i 83 d2pu9b1 not modelled 6.5 33 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Ferredoxin thioredoxin reductase (FTR), alpha (variable) chain 84 c1okgA_ not modelled 6.4 15 PDB header:transferase Chain: A: PDB Molecule:possible 3-mercaptopyruvate sulfurtransferase; PDBTitle: 3-mercaptopyruvate sulfurtransferase from leishmania major 85 d2djfa1 not modelled 6.1 11 Fold:Streptavidin-like Superfamily:Dipeptidyl peptidase I (cathepsin C), exclusion domain Family:Dipeptidyl peptidase I (cathepsin C), exclusion domain 86 c1zk6A_ not modelled 6.0 9 PDB header:isomerase Chain: A: PDB Molecule:foldase protein prsa; PDBTitle: nmr solution structure of b. subtilis prsa ppiase 87 d2etna2 not modelled 5.8 15 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 88 d1t6sa1 not modelled 5.7 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ScpB/YpuH-like 89 c1ttwB_ not modelled 5.7 18 PDB header:chaperone Chain: B: PDB Molecule:yscm2; PDBTitle: crystal structure of the yersinia pestis type iii secretion chaperone2 sych in complex with a stable fragment of yscm2 90 c2lazA_ not modelled 5.6 10 PDB header:signaling protein/transcription Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1; PDBTitle: structure of the first ww domain of human smurf1 in complex with a2 mono-phosphorylated human smad1 derived peptide 91 c2lb0A_ not modelled 5.6 10 PDB header:signaling protein/transcription Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1; PDBTitle: structure of the first ww domain of human smurf1 in complex with a di-2 phosphorylated human smad1 derived peptide 92 c3o7xC_ not modelled 5.5 25 PDB header:rna binding protein Chain: C: PDB Molecule:piwi-like protein 2; PDBTitle: crystal structure of human hili paz domain 93 c2cf2L_ not modelled 5.3 14 PDB header:transferase Chain: L: PDB Molecule:fatty acid synthase, dh domain; PDBTitle: architecture of mammalian fatty acid synthase 94 d1gpla1 not modelled 5.3 25 Fold:Lipase/lipooxygenase domain (PLAT/LH2 domain) Superfamily:Lipase/lipooxygenase domain (PLAT/LH2 domain) Family:Colipase-binding domain 95 c3od9B_ not modelled 5.2 20 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:putative exported protein; PDBTitle: crystal structure of plii-ah, periplasmic lysozyme inhibitor of i-type2 lysozyme from aeromonas hydrophyla 96 c3ikmD_ not modelled 5.2 28 PDB header:transferase Chain: D: PDB Molecule:dna polymerase subunit gamma-1; PDBTitle: crystal structure of human mitochondrial dna polymerase2 holoenzyme 97 c1yw5A_ not modelled 5.2 22 PDB header:isomerase Chain: A: PDB Molecule:peptidyl prolyl cis/trans isomerase; PDBTitle: peptidyl-prolyl isomerase ess1 from candida albicans 98 d1qfja1 not modelled 5.2 11 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 99 d1js8a2 not modelled 5.2 32 Fold:C-terminal domain of mollusc hemocyanin Superfamily:C-terminal domain of mollusc hemocyanin Family:C-terminal domain of mollusc hemocyanin

Binding site prediction

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If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0